CmaCh01G019760 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: CDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGCAAGTCATTTTAGGGTTTCCTCCTCCGCTACCCATTGACGATTTTGCCCCTGCTTTTTTGGGCCAGAATTTCTCCTCATGGACCCATAACGTGAGACTTCAGTAAAAGGCCCAAGCTCGGCAATCGAGCCCATTGGCCCATTTTGAGACTTGAATTTACTAAAGTCGCAGTCTAGATTTGTGGTTCGGTAAAGTCGTGGAAGAAGGCAGCGGTCAAGAATTTTGAGCTGTTCGTGGATCGAAAATAGAGGCCTCTTCGCGGTAAGAGGGTTGTGGTGTGATTTTCCTGCGCTGATTCGGAAGGTGTTCATTGCTGTTTCAGCTGAGTGGCTCTCCAGATCGATTGCCGGCGATAAACCGAGTAATTTCATTGTTTAGCTTAGCTGCTAAGGCCATGTCTTCCGATACTGTACCTCCTCTCATTGCTGCTCAAATCAATTACCTGCGCAATCACTTTCCTCTCCCCTTAATGGTAAACATTTCCGCTTACTATCTCTTCCTTGAAAATTCAGGGATAACAAACATTTCCGCTTACTATCTCTTCCTTGATCGGAAATGGATGATATTTGGAGTTCTTTCTTTCTTTTTTCCCTCCATTTTCCCACCCCGATGATAGTATTTAGTGTCGCTATAATATGGCGATAGAAAGCGAACGGTTTTTTGAACAGATCACTTATTCTTACTGTTTTGATATTCAGATTGAGAACATGTGGTCTGGCAGTAGACACTACCCTGGAATCATCGATAGGTTCACCTTAGTCATACCTTACTGCCTTGAATTCGTCAAATGTAAGACCTGTTTTCCATTGTTGTTATCATAATATCCTTTCAATTCTTTTCTCTTTCCCTGTAAATGGTTGACAGATTCACCGTACCTAGCTGTTTGATAGCTGTTACCTGTTGTAGGGGACATCATGTATGATGCTGAATCGCCATTTTCTGCACCTGATATTGTGTTTGGACCAGAAGATGAAAATTTCCATCCATTCACAAGTAAGGTTGATGAAGGAGAAGGATATCATGATTCCTTACAAAACAGTCTACGTGACTGGAACAGCAAAGATCCATCTCGGCTCACTAGCCTCCTTCAAGAACTGAGGTTCTTCAGGGCTTTCCTTTGATTGAGCCTTCTTCTGTTTCTAATGTTTTGGGTATAATTCAGCTTGAATTCAAAGGCAACTTTACTTTTTTTAAGGGATCGATATGCATCATACCAAAGGAAACGGGTTGAAGGAGTTGAGGATGAAAGATTGAAGTTTGAACTCTGTACTATGTTATCTAGGGAGGTAACGTTCTTCATTATATGTTTATTACACTGTCCTAACTCTGTTTTGATAATCAATTGCATGAGTTTAGGAATTTAAGGGGTCGGGTATTGGACTTGGTTTCTTGATAATACATTCTTGCTGGATGCCTGTAGAAATGTATAAAACTTTATAATTTAGTTTTCATGCTTGGAAACTGAATGAGAGAACTGCTGCTAGTTAATTATTCCAGATTTTTCATGCTTGAATTATAGTAGTGTAGAAGTTAAACCATCCCTATAATGTTTTTTTTTTTTTTGCTTATAACCATGTATTCCTTTAGTTGGGCAAGCTGCTCCTTATACAGATATCTGTGTTCTTTCCTTAAGGTTCTTTTATTTTCAATGGTAACTTAACCAAAACTACCTTTCTGCAGGGAATTGAAATGCATTTGAGTTCAGGTGTTGAGAAGGTAGTATTTTAAAGTATGTGGTTGTACTTTCCTTGAATAGTAAAGAGCTGATACTGAGAATTCTATTCTCTTTATTCTCATATGTGTGGCTTCTATGCCTTTGAATTTTAGTATAGCCAGAGGATGTCAAATTTGCAGTGCCATTAGTAGACATTAATATTAATAAGATGATACCTGGATGCCCATGGAGGCACCCACAGAAGATATTTTTGCAGGTTTCCTTTCTGAACTTCTGGTTTTCCTGTTCCTCTATTATTTCCCATTCTCATCATTGTTTATAGGTTTTATATCCTGTGGTGAGAAAATATGCGTCTACTCCTGCTGCACCTCGTCTGAAATTGGTCTCCACGTCTGAGTTGAAGGCTCTATTATCCATCGAGGACATCAAACTTCCTTCATGGATAGATGGAATGTAGGATACTCTCTCTCTTGTATCTCATTTCTATTTCTGCAGCGGTCAAGATTACATGGTAAAATTGATATCATTTTTTTTTTTTAACTGGCTTCAAGGTGCATGGCTGAATATCTTCCCCATCTAGAAGAGAGTCTTGAGAAACAGGTTGGTTAGATTTTTTTTTTTTTTTAACTCTCTGGGTTGATTAACTTGGTCTTTAGTTTTGGAAGTTGCCTAAAGTTGAAATTTTGTACTTTTATCATTCTGATGAAGGTACTGGATGCAGTTTCGTTGATCAATGTTAGGAGACGTTTTATAGAGGCGTTGAACTCTTTCTTTGGAAGGCCTCTAGAAGCTGATCCGGTGGGATTCTTACAAATTTATTTACATCCGTCGTCTTCATTTGTTGAAAATCATCATCCAATTCTTAATTTAAGTGGTGGGGGGTCGTCAAATTTTACTGATGATATGATTTTTTTTTTTTTTTTAGGTGTTCTGTCGAACGGCTACAGTTATCGCTGCCTCCGGCGTGTTCACATTCCTGGTATTGGCTTCACTATCCTTAATATGTAGTATCCCATCACTATGTGGATTTTTTTTTCGATTATTTACTATGAAAAAGAATATTGTTCACGTAATGGTTAGTTAATTCTGGCGATTGATAGGTTTCTTTAACTCACGATCATGTTTTCAAAATCTGCGGATGTTAGGATTAGCACCCTGGTCTGTAGATCTTCAGATAGCATAATATTGACTAGATGATCACCACCCAAAATATTTGGTACAATATTCTGGGGTCCAGTGCTGACAAAGATAGCCTTCAAATTTTCATTTTTCAGAGAGAAGCCCGAAATAAAGGATCCCTAACAACAAAAACAAAACAGTGAATAATTTTATAAAAGGGGAAAAGAAAGAGAATAAAATTTGTAGAGAACATCCAAACATAGGCATTAAAGAAAGCGACACTCACTCTAAACTTCCTTACAACACCTTTCTACATTCTTGAAGGAATGAACGTCTGCTTGAGAAACTGACAAACTCTGACATACCCCAACAACCCGTACTTGGATTATTAGCTCTCACCACTGAGAAATGTCCTCAAATCTTTACAACAAAGTGGCATCTCCATAAAACATAATCTAATTCTTCCAATGCCCTTCCGCATAAAATACACCACTGAGACCCACAACCGAAGATGAATGTTTGACCAGTTCATGATGTCAAATTTGATTATTTTGACTATGCGTAGGTCAAATATTGACCTTGCTAACTGATTTCTACTTTTTATTTTTTTGCTGAAGAAATGCGTTATCTCATTGAATTGGATGATAGCCAAAACATTTTGCAACTATTTATCCTTTCAAATGGTTTCTCTATTCCGTCCAGTTTCTATGAGACATTTTCGTGACACAGTTTCACACAAATCTTTCTTTTGATATCATATGTATAATAATTTGGAACAGAAGGTATGCTAGACTTGCAAATCTCTTGATGGTTAATGATTTGCTGATCGCACTAAGGATACTGGATCGGTGGTAAATGCTTTAAAAATTCTTTTGGTTTTAAATTAAACAACGATAGTGTGTATTGATCTGGTAAGATGGGGCATGGAATGCAGTTAATGTTTATTGATTGACAAAATAGTTGAGTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATATATATATATATAATAAGAGACAACATAGGAATTTATTTTCCTTTCCCTTGTTTTTCTGGGAATTTTTTGTTAATGCTAGGTCCATTTCCTCATGTCAACCCAATTTCCAAAGAAACAACCCTCTCTTGTGCTGCAAAGTTCTCAGGTAATGTAAATTTGTCTTTAATCTTGAAATTCTTGTGCATTCCAACTTTGCTTACTAGTACATATGACAAAGGCCATGAATATATGCTTCTATGTTTTTCATCAACATGCTCCTGTGGTCGTCCAAACTCTCCTTTATTTGGACTCCGTTATCATTTGTATTTTTCTAAAAAATCTGTACATTGTGACTAATGATCGTAAATATGTTAATAGGGAATATTTGGTTAATCAATTTTTATGAGGACGCATGTCTTGAAGTGATTAAATGACATGATAGGTGCAATCTGTATAACTCTAGTTTCCAAGGATGTTTCTGTTCATTGTGAATCGGACTGGCATCATTAAGATGGCTTCTTATTTTTATCAATATTTGATGGGCCTACTAGGTTTTATAAAGATCCCTTCTTGGATTATTGGTTTAGTACCCTCTTTTTCTAATTATGTCCATATATTGTTCAGCATTTCAACTCTCAAGGTGCACCCATAAAGTCGCAGCTTATCACCGACTATCCTTGGAGTCCTAGGTGGGAGCCATTGCAAATGGCTGAGCGGGTTTTGTAAGTTGTTTATCTATCTCTCATTTTCTCATTTGCATATACATTCACTTATCAATCGGGTTAATACCGTTTGGTTCGATTTTAACAGCGAGTTTCTGGCTGATGAGGCTTTGAGCTTCAAGAGGTATTGCAACGAGGCTCAACTTCAATGATTGGATTATGAAAACTCTGGTCAATCTGCCCTAACATGTAACAGTCCAATACCAGTTATGTATAGTTGGTTTGTTGAGTACTTTTAAATCTTGGCATTTTTAGATTGATTTTTGTCACCTCTTTGGGGCTGTCTCTCTCCTCAATGAGGATGATTCGAAGGTACATTTTATCAAGAACCGGATATGAGCTTTCAAATATAGAGAATCCGTATCTGTTATAAAAGTCGAATCCAGAAACAAAAGACTGACCCTCAACCGACCCTCAACGGGGCTGACCATGATTGTTGTATTACATTTTTTTTCTGTTGAACAGAACAAAATCAACTGACCAATTATGCGTGTTGCTTAAAATGCTCTCTTTGTAGGATCGGAC ATGGGCAAGTGTTCATTGCTGTTTCAGCTGAGTGGCTCTCCAGATCGATTGCCGGCGATAAACCGAGTAATTTCATTGTTTAGCTTAGCTGCTAAGGCCATGTCTTCCGATACTGTACCTCCTCTCATTGCTGCTCAAATCAATTACCTGCGCAATCACTTTCCTCTCCCCTTAATGATTGAGAACATGTGGTCTGGCAGTAGACACTACCCTGGAATCATCGATAGGTTCACCTTAGTCATACCTTACTGCCTTGAATTCGTCAAATGGGACATCATGTATGATGCTGAATCGCCATTTTCTGCACCTGATATTGTGTTTGGACCAGAAGATGAAAATTTCCATCCATTCACAAGTAAGGTTGATGAAGGAGAAGGATATCATGATTCCTTACAAAACAGTCTACGTGACTGGAACAGCAAAGATCCATCTCGGCTCACTAGCCTCCTTCAAGAACTGAGGGATCGATATGCATCATACCAAAGGAAACGGGTTGAAGGAGTTGAGGATGAAAGATTGAAGTTTGAACTCTGTACTATGTTATCTAGGGAGGGAATTGAAATGCATTTGAGTTCAGGTGTTGAGAAGCCAGAGGATGTCAAATTTGCAGTGCCATTAGTAGACATTAATATTAATAAGATGATACCTGGATGCCCATGGAGGCACCCACAGAAGATATTTTTGCAGGTTTTATATCCTGTGGTGAGAAAATATGCGTCTACTCCTGCTGCACCTCGTCTGAAATTGGTCTCCACGTCTGAGTTGAAGGCTCTATTATCCATCGAGGACATCAAACTTCCTTCATGGATAGATGGAATGTGCATGGCTGAATATCTTCCCCATCTAGAAGAGAGTCTTGAGAAACAGGTACTGGATGCAGTTTCGTTGATCAATGTTAGGAGACGTTTTATAGAGGCGTTGAACTCTTTCTTTGGAAGGCCTCTAGAAGCTGATCCGGTGTTCTGTCGAACGGCTACAGTTATCGCTGCCTCCGGCGTGTTCACATTCCTGGTCCATTTCCTCATGTCAACCCAATTTCCAAAGAAACAACCCTCTCTTGTGCTGCAAAGTTCTCAGCATTTCAACTCTCAAGGTGCACCCATAAAGTCGCAGCTTATCACCGACTATCCTTGGAGTCCTAGGTGGGAGCCATTGCAAATGGCTGAGCGGGTTTTCGAGTTTCTGGCTGATGAGGCTTTGAGCTTCAAGAGGTATTGCAACGAGGCTCAACTTCAATGATTGGATTATGAAAACTCTGGTCAATCTGCCCTAACATGTAACAGTCCAATACCAGTTATGTATAGTTGGTTTGTTGAGTACTTTTAAATCTTGGCATTTTTAGATTGATTTTTGTCACCTCTTTGGGGCTGTCTCTCTCCTCAATGAGGATGATTCGAAGGTACATTTTATCAAGAACCGGATATGAGCTTTCAAATATAGAGAATCCGTATCTGTTATAAAAGTCGAATCCAGAAACAAAAGACTGACCCTCAACCGACCCTCAACGGGGCTGACCATGATTGTTGTATTACATTTTTTTTCTGTTGAACAGAACAAAATCAACTGACCAATTATGCGTGTTGCTTAAAATGCTCTCTTTGTAGGATCGGAC ATGGGCAAGTGTTCATTGCTGTTTCAGCTGAGTGGCTCTCCAGATCGATTGCCGGCGATAAACCGAGTAATTTCATTGTTTAGCTTAGCTGCTAAGGCCATGTCTTCCGATACTGTACCTCCTCTCATTGCTGCTCAAATCAATTACCTGCGCAATCACTTTCCTCTCCCCTTAATGATTGAGAACATGTGGTCTGGCAGTAGACACTACCCTGGAATCATCGATAGGTTCACCTTAGTCATACCTTACTGCCTTGAATTCGTCAAATGGGACATCATGTATGATGCTGAATCGCCATTTTCTGCACCTGATATTGTGTTTGGACCAGAAGATGAAAATTTCCATCCATTCACAAGTAAGGTTGATGAAGGAGAAGGATATCATGATTCCTTACAAAACAGTCTACGTGACTGGAACAGCAAAGATCCATCTCGGCTCACTAGCCTCCTTCAAGAACTGAGGGATCGATATGCATCATACCAAAGGAAACGGGTTGAAGGAGTTGAGGATGAAAGATTGAAGTTTGAACTCTGTACTATGTTATCTAGGGAGGGAATTGAAATGCATTTGAGTTCAGGTGTTGAGAAGCCAGAGGATGTCAAATTTGCAGTGCCATTAGTAGACATTAATATTAATAAGATGATACCTGGATGCCCATGGAGGCACCCACAGAAGATATTTTTGCAGGTTTTATATCCTGTGGTGAGAAAATATGCGTCTACTCCTGCTGCACCTCGTCTGAAATTGGTCTCCACGTCTGAGTTGAAGGCTCTATTATCCATCGAGGACATCAAACTTCCTTCATGGATAGATGGAATGTGCATGGCTGAATATCTTCCCCATCTAGAAGAGAGTCTTGAGAAACAGGTACTGGATGCAGTTTCGTTGATCAATGTTAGGAGACGTTTTATAGAGGCGTTGAACTCTTTCTTTGGAAGGCCTCTAGAAGCTGATCCGGTGTTCTGTCGAACGGCTACAGTTATCGCTGCCTCCGGCGTGTTCACATTCCTGGTCCATTTCCTCATGTCAACCCAATTTCCAAAGAAACAACCCTCTCTTGTGCTGCAAAGTTCTCAGCATTTCAACTCTCAAGGTGCACCCATAAAGTCGCAGCTTATCACCGACTATCCTTGGAGTCCTAGGTGGGAGCCATTGCAAATGGCTGAGCGGGTTTTCGAGTTTCTGGCTGATGAGGCTTTGAGCTTCAAGAGGTATTGCAACGAGGCTCAACTTCAATGA MGKCSLLFQLSGSPDRLPAINRVISLFSLAAKAMSSDTVPPLIAAQINYLRNHFPLPLMIENMWSGSRHYPGIIDRFTLVIPYCLEFVKWDIMYDAESPFSAPDIVFGPEDENFHPFTSKVDEGEGYHDSLQNSLRDWNSKDPSRLTSLLQELRDRYASYQRKRVEGVEDERLKFELCTMLSREGIEMHLSSGVEKPEDVKFAVPLVDININKMIPGCPWRHPQKIFLQVLYPVVRKYASTPAAPRLKLVSTSELKALLSIEDIKLPSWIDGMCMAEYLPHLEESLEKQVLDAVSLINVRRRFIEALNSFFGRPLEADPVFCRTATVIAASGVFTFLVHFLMSTQFPKKQPSLVLQSSQHFNSQGAPIKSQLITDYPWSPRWEPLQMAERVFEFLADEALSFKRYCNEAQLQ
BLAST of CmaCh01G019760 vs. Swiss-Prot
Match: BRE_BRAFL (BRCA1-A complex subunit BRE OS=Branchiostoma floridae GN=BRE PE=3 SV=1) HSP 1 Score: 125.6 bits (314), Expect = 1.3e-27 Identity = 90/337 (26.71%), Postives = 159/337 (47.18%), Query Frame = 1
BLAST of CmaCh01G019760 vs. Swiss-Prot
Match: BRE_DANRE (BRCA1-A complex subunit BRE OS=Danio rerio GN=bre PE=2 SV=1) HSP 1 Score: 122.5 bits (306), Expect = 1.1e-26 Identity = 101/332 (30.42%), Postives = 157/332 (47.29%), Query Frame = 1
BLAST of CmaCh01G019760 vs. Swiss-Prot
Match: BRE_XENTR (BRCA1-A complex subunit BRE OS=Xenopus tropicalis GN=bre PE=2 SV=1) HSP 1 Score: 122.1 bits (305), Expect = 1.4e-26 Identity = 100/332 (30.12%), Postives = 155/332 (46.69%), Query Frame = 1
BLAST of CmaCh01G019760 vs. Swiss-Prot
Match: BRE_MESAU (BRCA1-A complex subunit BRE OS=Mesocricetus auratus GN=Bre PE=2 SV=1) HSP 1 Score: 120.6 bits (301), Expect = 4.2e-26 Identity = 100/325 (30.77%), Postives = 155/325 (47.69%), Query Frame = 1
BLAST of CmaCh01G019760 vs. Swiss-Prot
Match: BRE_XENLA (BRCA1-A complex subunit BRE OS=Xenopus laevis GN=bre PE=2 SV=1) HSP 1 Score: 119.8 bits (299), Expect = 7.1e-26 Identity = 100/333 (30.03%), Postives = 156/333 (46.85%), Query Frame = 1
BLAST of CmaCh01G019760 vs. TrEMBL
Match: A0A0A0LDL1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G872710 PE=4 SV=1) HSP 1 Score: 730.3 bits (1884), Expect = 1.3e-207 Identity = 353/379 (93.14%), Postives = 370/379 (97.63%), Query Frame = 1
BLAST of CmaCh01G019760 vs. TrEMBL
Match: W9RNI6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_016058 PE=4 SV=1) HSP 1 Score: 588.6 bits (1516), Expect = 6.0e-165 Identity = 280/379 (73.88%), Postives = 329/379 (86.81%), Query Frame = 1
BLAST of CmaCh01G019760 vs. TrEMBL
Match: M5XY87_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006820mg PE=4 SV=1) HSP 1 Score: 577.8 bits (1488), Expect = 1.1e-161 Identity = 270/385 (70.13%), Postives = 332/385 (86.23%), Query Frame = 1
BLAST of CmaCh01G019760 vs. TrEMBL
Match: A0A059BPN6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01664 PE=4 SV=1) HSP 1 Score: 562.8 bits (1449), Expect = 3.5e-157 Identity = 255/379 (67.28%), Postives = 319/379 (84.17%), Query Frame = 1
BLAST of CmaCh01G019760 vs. TrEMBL
Match: A0A067KLA8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08208 PE=4 SV=1) HSP 1 Score: 555.8 bits (1431), Expect = 4.3e-155 Identity = 255/379 (67.28%), Postives = 322/379 (84.96%), Query Frame = 1
BLAST of CmaCh01G019760 vs. TAIR10
Match: AT5G42470.1 (AT5G42470.1 Brain/reproductive organ-expressed protein (InterPro:IPR010358)) HSP 1 Score: 483.4 bits (1243), Expect = 1.4e-136 Identity = 225/381 (59.06%), Postives = 302/381 (79.27%), Query Frame = 1
BLAST of CmaCh01G019760 vs. NCBI nr
Match: gi|449437198|ref|XP_004136379.1| (PREDICTED: BRCA1-A complex subunit BRE [Cucumis sativus]) HSP 1 Score: 730.3 bits (1884), Expect = 1.8e-207 Identity = 353/379 (93.14%), Postives = 370/379 (97.63%), Query Frame = 1
BLAST of CmaCh01G019760 vs. NCBI nr
Match: gi|659132969|ref|XP_008466484.1| (PREDICTED: BRCA1-A complex subunit BRE [Cucumis melo]) HSP 1 Score: 728.8 bits (1880), Expect = 5.3e-207 Identity = 352/379 (92.88%), Postives = 371/379 (97.89%), Query Frame = 1
BLAST of CmaCh01G019760 vs. NCBI nr
Match: gi|703129832|ref|XP_010104459.1| (hypothetical protein L484_016058 [Morus notabilis]) HSP 1 Score: 588.6 bits (1516), Expect = 8.6e-165 Identity = 280/379 (73.88%), Postives = 329/379 (86.81%), Query Frame = 1
BLAST of CmaCh01G019760 vs. NCBI nr
Match: gi|596166419|ref|XP_007223011.1| (hypothetical protein PRUPE_ppa006820mg [Prunus persica]) HSP 1 Score: 577.8 bits (1488), Expect = 1.5e-161 Identity = 270/385 (70.13%), Postives = 332/385 (86.23%), Query Frame = 1
BLAST of CmaCh01G019760 vs. NCBI nr
Match: gi|645228996|ref|XP_008221255.1| (PREDICTED: BRCA1-A complex subunit BRE [Prunus mume]) HSP 1 Score: 575.1 bits (1481), Expect = 9.9e-161 Identity = 268/379 (70.71%), Postives = 329/379 (86.81%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |