Carg16869 (gene) Silver-seed gourd

Overview
NameCarg16869
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionLOB domain protein
LocationCucurbita_argyrosperma_scaffold_105 : 522150 .. 523897 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCTTCTTCTTCTTCTTCTAGTACTGCAAATAGTAGCGTGTCGGGCGGCGGCGGCGGCGGCGGTGGTGGCGGTGGTGGTGGCTCTCCTTGTGGAGCATGCAAGTTTCTGCGGCGGAAATGTGTGGCTGACTGTATTTTTGCACCTTACTTTAGCTCGGAACAAGGGGCTGCAAGATTTGCCGCCGTTCATAAAGTGTTTGGGGCTAGTAATGTGTCTAAGTTGCTGCATCATGTGCCTGCTCATGATCGCTGTGAGGCTGTTGTTACTATTGCTTATGAAGCTCAAGCAAGGATTCTTGACCCTGTTTATGGCTGTGTCGCCCATATTTTTGCTCTCCAACAACAGGTAATTTTGAATATGAATGCAAGATTATGTTTTTGAGGGTTCGGGAAACCTGATCAACCCAATTCGAGCCAAGCGATACGGTTTGGGTTGAGTTACGAACTTGTTTGAACTATTTGAATTGGGTTCAGTTTCAAATAGATGAATATTTTACTTACTCAATTGATTCATGAGTTTCTCTAAGACTAGATAAGGTTCAATCAAATCATCTCGTATTTATGTTAATTTAAAGAAATTATTTTTAAATTTTTTAAAATTTTCATTATCGGATCACTCTCAAAAATGATTTTTAAAAACTATTTTGAAGGTAGTTTTTCGAAATATATATTGAAGTTGAGTTGCACGCGTTAATTAAATATTTAAAAATGAATATGCATCTTAATCAAGGGTGGATTGTGAGATTATACCTGTGTTAGAGAGAGGAATGAAACATTCCTTGTAAGTGTAACATCTCAAACCAATCATTAGTAGATATCGTCCGTTTTAGCCTGTTACGTATTGTCATCAGCTTCACTGGTCTTTGTAACCCTCTCCAACCAATGTGAGATCTCACTATCCACCCCCTTGGGGGTCTAGCGTCCTGGCTAGCACACCGCCCAATATCTGACTCTGATACCATTTGTAATATCTCAAGCCTACCACTAACAGATATTGTCCATTTCATTCTGTTACGTATCGTTGTCAACCTCACAGTTTTTAATTGCATATACTAGGGAGAGATTTTCACATTCTTATAAGAAATGCTTCGTTTCTCTCTCCAACTGATGTGAGATCTCACTTAGCAGACACGTTTTCCATGAGATCGAGGACCAAATCGGACAATATCCACTAGCTGTGGTCTTTGGGCAAAGAAAATTTAAAATGAATAACCTTAATAACTCAAACTAACCTAACAAATTGAGTTGAGTTCATTATTTAAGAAGAGTAGTTTAGATTGAAAAAATTAACAAATCTAACAATTGGATTAGGTCAAAAAGTCTCAATCTGACTCAACCGGACCCACGAACAACAGTACATATACTTCTTTTTAAAATCCTTAAAATGGGTTTTGTTTTTTGTTCTTGAATTTGAAGGTGGCATGCTTACAAGCACAATTGATGCAAGCCAAGGCTCAACTTGCCCAAACCCTGATGGAATCAGGAGGCAACATGGAGCTTCAATGGACAGGAAGCTTCAATAACAATCTCTCCAATGGAATCCCAAGCAATTATGAGACTCAAATTATGAACCCAGCAGTTTCCCCACAGAGCTCAGTGGAATCAGCAGCCAACAACGATGCAGCATTAATGTTCATGAACCATTATCAAGAGAGCCAAACATTGGGTAGAAGAAGATCAGCTTCATGTCATGGTGATCTTGGGGAGCTTCAAGCTTTGGCCCTTAGAATGATGAGAAACTAA

mRNA sequence

ATGGCGTCTTCTTCTTCTTCTTCTAGTACTGCAAATAGTAGCGTGTCGGGCGGCGGCGGCGGCGGCGGTGGTGGCGGTGGTGGTGGCTCTCCTTGTGGAGCATGCAAGTTTCTGCGGCGGAAATGTGTGGCTGACTGTATTTTTGCACCTTACTTTAGCTCGGAACAAGGGGCTGCAAGATTTGCCGCCGTTCATAAAGTGTTTGGGGCTAGTAATGTGTCTAAGTTGCTGCATCATGTGCCTGCTCATGATCGCTGTGAGGCTGTTGTTACTATTGCTTATGAAGCTCAAGCAAGGATTCTTGACCCTGTTTATGGCTGTGTCGCCCATATTTTTGCTCTCCAACAACAGGTGGCATGCTTACAAGCACAATTGATGCAAGCCAAGGCTCAACTTGCCCAAACCCTGATGGAATCAGGAGGCAACATGGAGCTTCAATGGACAGGAAGCTTCAATAACAATCTCTCCAATGGAATCCCAAGCAATTATGAGACTCAAATTATGAACCCAGCAGTTTCCCCACAGAGCTCAGTGGAATCAGCAGCCAACAACGATGCAGCATTAATGTTCATGAACCATTATCAAGAGAGCCAAACATTGGGTAGAAGAAGATCAGCTTCATGTCATGGTGATCTTGGGGAGCTTCAAGCTTTGGCCCTTAGAATGATGAGAAACTAA

Coding sequence (CDS)

ATGGCGTCTTCTTCTTCTTCTTCTAGTACTGCAAATAGTAGCGTGTCGGGCGGCGGCGGCGGCGGCGGTGGTGGCGGTGGTGGTGGCTCTCCTTGTGGAGCATGCAAGTTTCTGCGGCGGAAATGTGTGGCTGACTGTATTTTTGCACCTTACTTTAGCTCGGAACAAGGGGCTGCAAGATTTGCCGCCGTTCATAAAGTGTTTGGGGCTAGTAATGTGTCTAAGTTGCTGCATCATGTGCCTGCTCATGATCGCTGTGAGGCTGTTGTTACTATTGCTTATGAAGCTCAAGCAAGGATTCTTGACCCTGTTTATGGCTGTGTCGCCCATATTTTTGCTCTCCAACAACAGGTGGCATGCTTACAAGCACAATTGATGCAAGCCAAGGCTCAACTTGCCCAAACCCTGATGGAATCAGGAGGCAACATGGAGCTTCAATGGACAGGAAGCTTCAATAACAATCTCTCCAATGGAATCCCAAGCAATTATGAGACTCAAATTATGAACCCAGCAGTTTCCCCACAGAGCTCAGTGGAATCAGCAGCCAACAACGATGCAGCATTAATGTTCATGAACCATTATCAAGAGAGCCAAACATTGGGTAGAAGAAGATCAGCTTCATGTCATGGTGATCTTGGGGAGCTTCAAGCTTTGGCCCTTAGAATGATGAGAAACTAA

Protein sequence

MASSSSSSSTANSSVSGGGGGGGGGGGGGSPCGACKFLRRKCVADCIFAPYFSSEQGAARFAAVHKVFGASNVSKLLHHVPAHDRCEAVVTIAYEAQARILDPVYGCVAHIFALQQQVACLQAQLMQAKAQLAQTLMESGGNMELQWTGSFNNNLSNGIPSNYETQIMNPAVSPQSSVESAANNDAALMFMNHYQESQTLGRRRSASCHGDLGELQALALRMMRN
Homology
[Close]
BLAST of Carg16869 vs. NCBI nr
Match: XP_022963633.1 (LOB domain-containing protein 16-like [Cucurbita moschata])

HSP 1 Score: 384.0 bits (985), Expect = 3.4e-103
Identity = 194/195 (99.49%), Postives = 195/195 (100.00%), Query Frame = 0 

Query: 31  PCGACKFLRRKCVADCIFAPYFSSEQGAARFAAVHKVFGASNVSKLLHHVPAHDRCEAVV 90
           PCGACKFLRRKCVA+CIFAPYFSSEQGAARFAAVHKVFGASNVSKLLHHVPAHDRCEAVV
Sbjct: 28  PCGACKFLRRKCVAECIFAPYFSSEQGAARFAAVHKVFGASNVSKLLHHVPAHDRCEAVV 87

Query: 91  TIAYEAQARILDPVYGCVAHIFALQQQVACLQAQLMQAKAQLAQTLMESGGNMELQWTGS 150
           TIAYEAQARILDPVYGCVAHIFALQQQVACLQAQLMQAKAQLAQTLMESGGNMELQWTGS
Sbjct: 88  TIAYEAQARILDPVYGCVAHIFALQQQVACLQAQLMQAKAQLAQTLMESGGNMELQWTGS 147

Query: 151 FNNNLSNGIPSNYETQIMNPAVSPQSSVESAANNDAALMFMNHYQESQTLGRRRSASCHG 210
           FNNNLSNGIPSNYETQIMNPAVSPQSSVESAANNDAALMFMNHYQESQTLGRRRSASCHG
Sbjct: 148 FNNNLSNGIPSNYETQIMNPAVSPQSSVESAANNDAALMFMNHYQESQTLGRRRSASCHG 207

Query: 211 DLGELQALALRMMRN 226
           DLGELQALALRMMRN
Sbjct: 208 DLGELQALALRMMRN 222

[Close]
BLAST of Carg16869 vs. NCBI nr
Match: XP_023511722.1 (LOB domain-containing protein 16-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 373.2 bits (957), Expect = 6.0e-100
Identity = 191/195 (97.95%), Postives = 192/195 (98.46%), Query Frame = 0 

Query: 31  PCGACKFLRRKCVADCIFAPYFSSEQGAARFAAVHKVFGASNVSKLLHHVPAHDRCEAVV 90
           PCGACKFLRRKCVA+CIFAPYFSSEQGAARFAAVHKVFGASNVSKLL HVPAHDRCEAVV
Sbjct: 31  PCGACKFLRRKCVAECIFAPYFSSEQGAARFAAVHKVFGASNVSKLLLHVPAHDRCEAVV 90

Query: 91  TIAYEAQARILDPVYGCVAHIFALQQQVACLQAQLMQAKAQLAQTLMESGGNMELQWTGS 150
           TIAYEAQARILDPVYGCVAHIFALQQQVA LQAQLMQAKAQLAQTLMESGGNMELQWTGS
Sbjct: 91  TIAYEAQARILDPVYGCVAHIFALQQQVAYLQAQLMQAKAQLAQTLMESGGNMELQWTGS 150

Query: 151 FNNNLSNGIPSNYETQIMNPAVSPQSSVESAANNDAALMFMNHYQESQTLGRRRSASCHG 210
           FNNNLSNGIPSNYETQIMNPAVSPQSSVESAANNDAALMFMNHYQESQTL RRRSASCHG
Sbjct: 151 FNNNLSNGIPSNYETQIMNPAVSPQSSVESAANNDAALMFMNHYQESQTLARRRSASCHG 210

Query: 211 DLGELQALALRMMRN 226
           DLGELQALALRMMRN
Sbjct: 211 DLGELQALALRMMRN 225

[Close]
BLAST of Carg16869 vs. NCBI nr
Match: XP_022967414.1 (LOB domain-containing protein 16-like [Cucurbita maxima])

HSP 1 Score: 370.5 bits (950), Expect = 3.9e-99
Identity = 189/195 (96.92%), Postives = 191/195 (97.95%), Query Frame = 0 

Query: 31  PCGACKFLRRKCVADCIFAPYFSSEQGAARFAAVHKVFGASNVSKLLHHVPAHDRCEAVV 90
           PCGACKFLRRKCVA+CIFAPYFSSEQGAARFAAVHKVFGASNVSKLL HVP HDRCEAVV
Sbjct: 32  PCGACKFLRRKCVAECIFAPYFSSEQGAARFAAVHKVFGASNVSKLLLHVPVHDRCEAVV 91

Query: 91  TIAYEAQARILDPVYGCVAHIFALQQQVACLQAQLMQAKAQLAQTLMESGGNMELQWTGS 150
           TIAYEAQARILDPVYGCVAHIFALQQQVA LQAQLMQAKAQLAQTLM+SGGNMELQWTGS
Sbjct: 92  TIAYEAQARILDPVYGCVAHIFALQQQVAYLQAQLMQAKAQLAQTLMDSGGNMELQWTGS 151

Query: 151 FNNNLSNGIPSNYETQIMNPAVSPQSSVESAANNDAALMFMNHYQESQTLGRRRSASCHG 210
           FNNNLSNGIPSNYETQIMNPAVSPQSSVESAANNDAALMFMNHYQESQTL RRRSASCHG
Sbjct: 152 FNNNLSNGIPSNYETQIMNPAVSPQSSVESAANNDAALMFMNHYQESQTLARRRSASCHG 211

Query: 211 DLGELQALALRMMRN 226
           DLGELQALALRMMRN
Sbjct: 212 DLGELQALALRMMRN 226

[Close]
BLAST of Carg16869 vs. NCBI nr
Match: XP_008461877.1 (PREDICTED: LOB domain-containing protein 16 [Cucumis melo])

HSP 1 Score: 287.0 bits (733), Expect = 5.7e-74
Identity = 161/213 (75.59%), Postives = 174/213 (81.69%), Query Frame = 0 

Query: 31  PCGACKFLRRKCVADCIFAPYFSSEQGAARFAAVHKVFGASNVSKLLHHVPAHDRCEAVV 90
           PCGACKFLRRKCVADCIFAPYF SEQGAARFAA+HKVFGASNVSKLL HVP HDRCEAVV
Sbjct: 25  PCGACKFLRRKCVADCIFAPYFCSEQGAARFAAIHKVFGASNVSKLLLHVPVHDRCEAVV 84

Query: 91  TIAYEAQARILDPVYGCVAHIFALQQQVACLQAQLMQAKAQLAQTLMESGGNMELQWTGS 150
           TIAYEAQARI DPVYGCVAHIFALQQQVA LQ QLMQAKAQLAQTLM+SG NME+QWTG 
Sbjct: 85  TIAYEAQARIHDPVYGCVAHIFALQQQVAYLQTQLMQAKAQLAQTLMDSGSNMEIQWTGD 144

Query: 151 FNN-NLSNG-IP-SNYETQIMNPAVSPQSSVESAANNDAALMFMNH---YQES------- 210
           FNN NLSNG IP +NY+TQIMN   +PQSS+ESAANND AL+F+N    + ES       
Sbjct: 145 FNNSNLSNGSIPNNNYQTQIMNNP-TPQSSLESAANNDEALLFINQNQLFHESQLSRSSQ 204

Query: 211 -----QTLGRRRSASCHGDLGELQALALRMMRN 226
                Q   R++ +S H DLGEL ALALRMMRN
Sbjct: 205 EPQILQPFPRKKLSSSHADLGELHALALRMMRN 236

[Close]
BLAST of Carg16869 vs. NCBI nr
Match: XP_004152037.1 (PREDICTED: LOB domain-containing protein 16 [Cucumis sativus])

HSP 1 Score: 280.4 bits (716), Expect = 5.3e-72
Identity = 160/214 (74.77%), Postives = 171/214 (79.91%), Query Frame = 0 

Query: 31  PCGACKFLRRKCVADCIFAPYFSSEQGAARFAAVHKVFGASNVSKLLHHVPAHDRCEAVV 90
           PCGACKFLRRKCVADCIFAPYF SEQGAARFAA+HKVFGASNVSKLL HVP HDRCEAVV
Sbjct: 17  PCGACKFLRRKCVADCIFAPYFCSEQGAARFAAIHKVFGASNVSKLLLHVPVHDRCEAVV 76

Query: 91  TIAYEAQARILDPVYGCVAHIFALQQQVACLQAQLMQAKAQLAQTLMESGGNMELQWTGS 150
           TIAYEAQARI DPVYGCVAHIFALQQQVA LQ QLM AKAQLA+TLM+SG NME+QWTG 
Sbjct: 77  TIAYEAQARIHDPVYGCVAHIFALQQQVAYLQTQLMHAKAQLAETLMDSGSNMEIQWTGD 136

Query: 151 F-NNNLSNG-IPS-NYETQIMNPAVSPQSSVESAANNDAALMFMNH------------YQ 210
           F NNNLSNG IPS NY+TQI N   SPQSS+ESAANND AL+F+N              Q
Sbjct: 137 FNNNNLSNGSIPSNNYQTQITNNP-SPQSSLESAANNDEALLFINQNQLFHESQLSRSSQ 196

Query: 211 ESQTL----GRRRSASCHGDLGELQALALRMMRN 226
           E Q L     ++  +S H DLGEL ALALRMMRN
Sbjct: 197 EPQFLQPFPRKKLPSSSHADLGELHALALRMMRN 229

[Close]
BLAST of Carg16869 vs. TAIR10
Match: AT2G42430.1 (lateral organ boundaries-domain 16)

HSP 1 Score: 183.3 bits (464), Expect = 1.6e-46
Identity = 119/231 (51.52%), Postives = 138/231 (59.74%), Query Frame = 0 

Query: 31  PCGACKFLRRKCVADCIFAPYFSSEQGAARFAAVHKVFGASNVSKLLHHVPAHDRCEAVV 90
           PCGACKFLRRKC +DCIFAPYFSSEQGAARFAA+HKVFGASNVSKLL +VP HDRCEAVV
Sbjct: 15  PCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLNVPIHDRCEAVV 74

Query: 91  TIAYEAQARILDPVYGCVAHIFALQQQVACLQAQLMQAKAQLAQTLMESGG--------- 150
           TIAYEAQAR+ DPVYGCV+HIFALQQQVA L          +A     + G         
Sbjct: 75  TIAYEAQARLHDPVYGCVSHIFALQQQVAFLXXXXXXXXXXIAGHQTSAAGDLRHSSEST 134

Query: 151 NMELQW-------TGSFNNNLSNGIPSNYETQIMNPAVSPQSSVESAANNDA------AL 210
           N  + W        GS  +   N     Y     N  VSPQSS+E + +N +      A 
Sbjct: 135 NQFMTWQQTSVSPIGSAYSTPYNHHQPYYGHVNPNNPVSPQSSLEESFSNTSSDVTTTAN 194

Query: 211 MFMNHYQESQTL-------------GRRRSAS-CHGDLGELQALALRMMRN 226
           +   H+Q    +              ++RS S C  DLGELQALALRMM+N
Sbjct: 195 VRETHHQTGGGVYGHDGIGFHEGYPNKKRSVSYCSSDLGELQALALRMMKN 245

[Close]
BLAST of Carg16869 vs. TAIR10
Match: AT3G58190.1 (lateral organ boundaries-domain 29)

HSP 1 Score: 158.7 bits (400), Expect = 4.2e-39
Identity = 75/107 (70.09%), Postives = 88/107 (82.24%), Query Frame = 0 

Query: 31  PCGACKFLRRKCVADCIFAPYFSSEQGAARFAAVHKVFGASNVSKLLHHVPAHDRCEAVV 90
           PCGACKFLRRKC   C+FAPYF  EQGA+ FAA+HKVFGASN SKLL H+P  DRCEA +
Sbjct: 11  PCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPISDRCEAAI 70

Query: 91  TIAYEAQARILDPVYGCVAHIFALQQQVACLQAQLMQAKAQLAQTLM 138
           TI+YEAQAR+ DP+YGCV+HIFALQQQV  LQA+L   K Q AQ+++
Sbjct: 71  TISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMI 117

[Close]
BLAST of Carg16869 vs. TAIR10
Match: AT3G03760.1 (LOB domain-containing protein 20)

HSP 1 Score: 158.3 bits (399), Expect = 5.5e-39
Identity = 78/102 (76.47%), Postives = 90/102 (88.24%), Query Frame = 0 

Query: 31  PCGACKFLRRKCVADCIFAPYFSSEQGAARFAAVHKVFGASNVSKLLHHVPAHDRCEAVV 90
           PCGACKFLRRKCV+ CIFAP+F S+QGAARFAAVHKVFGASNVSKLLHH+P + R +AVV
Sbjct: 51  PCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVV 110

Query: 91  TIAYEAQARILDPVYGCVAHIFALQQQVACLQAQLMQAKAQL 133
           TI+YEAQAR+ DPVYGCV+ I ALQQQVA LQA+L   ++QL
Sbjct: 111 TISYEAQARLSDPVYGCVSTILALQQQVASLQAELSVVQSQL 152

[Close]
BLAST of Carg16869 vs. TAIR10
Match: AT2G45420.1 (LOB domain-containing protein 18)

HSP 1 Score: 157.9 bits (398), Expect = 7.2e-39
Identity = 79/102 (77.45%), Postives = 86/102 (84.31%), Query Frame = 0 

Query: 32  CGACKFLRRKCVADCIFAPYFSSEQGAARFAAVHKVFGASNVSKLLHHVPAHDRCEAVVT 91
           CGACKFLRRKCV  CIFAPYF SEQG+A FAAVHKVFGASNVSKLL H+P H R +AVVT
Sbjct: 38  CGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVHRRSDAVVT 97

Query: 92  IAYEAQARILDPVYGCVAHIFALQQQVACLQAQLMQAKAQLA 134
           I YEAQARI DP+YGCVAHIFALQQQV  LQA++   +A LA
Sbjct: 98  ICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLA 139

[Close]
BLAST of Carg16869 vs. TAIR10
Match: AT4G00220.1 (Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 149.8 bits (377), Expect = 2.0e-36
Identity = 70/86 (81.40%), Postives = 77/86 (89.53%), Query Frame = 0 

Query: 31  PCGACKFLRRKCVADCIFAPYFSSEQGAARFAAVHKVFGASNVSKLLHHVPAHDRCEAVV 90
           PCGACKFLRRKCVA CIFAPYF SEQGAA FAAVHKVFGASNVSKLLHHVP H R +AVV
Sbjct: 17  PCGACKFLRRKCVAGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLHHVPEHKRPDAVV 76

Query: 91  TIAYEAQARILDPVYGCVAHIFALQQ 117
           +I +EAQAR+ DP+YGCV+HI +LQQ
Sbjct: 77  SICFEAQARLRDPIYGCVSHIVSLQQ 102

[Close]
BLAST of Carg16869 vs. Swiss-Prot
Match: sp|Q9SLB7|LBD16_ARATH (LOB domain-containing protein 16 OS=Arabidopsis thaliana OX=3702 GN=LBD16 PE=1 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.9e-45
Identity = 119/231 (51.52%), Postives = 138/231 (59.74%), Query Frame = 0 

Query: 31  PCGACKFLRRKCVADCIFAPYFSSEQGAARFAAVHKVFGASNVSKLLHHVPAHDRCEAVV 90
           PCGACKFLRRKC +DCIFAPYFSSEQGAARFAA+HKVFGASNVSKLL +VP HDRCEAVV
Sbjct: 15  PCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLNVPIHDRCEAVV 74

Query: 91  TIAYEAQARILDPVYGCVAHIFALQQQVACLQAQLMQAKAQLAQTLMESGG--------- 150
           TIAYEAQAR+ DPVYGCV+HIFALQQQVA L          +A     + G         
Sbjct: 75  TIAYEAQARLHDPVYGCVSHIFALQQQVAFLXXXXXXXXXXIAGHQTSAAGDLRHSSEST 134

Query: 151 NMELQW-------TGSFNNNLSNGIPSNYETQIMNPAVSPQSSVESAANNDA------AL 210
           N  + W        GS  +   N     Y     N  VSPQSS+E + +N +      A 
Sbjct: 135 NQFMTWQQTSVSPIGSAYSTPYNHHQPYYGHVNPNNPVSPQSSLEESFSNTSSDVTTTAN 194

Query: 211 MFMNHYQESQTL-------------GRRRSAS-CHGDLGELQALALRMMRN 226
           +   H+Q    +              ++RS S C  DLGELQALALRMM+N
Sbjct: 195 VRETHHQTGGGVYGHDGIGFHEGYPNKKRSVSYCSSDLGELQALALRMMKN 245

[Close]
BLAST of Carg16869 vs. Swiss-Prot
Match: sp|Q5UG13|LBD_ORYSJ (LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=CRL1 PE=1 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.6e-38
Identity = 80/104 (76.92%), Postives = 86/104 (82.69%), Query Frame = 0 

Query: 31  PCGACKFLRRKCVADCIFAPYFSSEQGAARFAAVHKVFGASNVSKLLHHVPAHDRCEAVV 90
           PCGACKFLRRKCV  C+FAPYF  EQGAA FAA+HKVFGASNVSKLL H+P  DR EA V
Sbjct: 7   PCGACKFLRRKCVRGCVFAPYFCHEQGAAHFAAIHKVFGASNVSKLLAHLPLADRPEAAV 66

Query: 91  TIAYEAQARILDPVYGCVAHIFALQQQVACLQAQLMQAKAQLAQ 135
           TI+YEAQAR+ DP+YGCVAHIFALQQQV  LQAQL   KA  AQ
Sbjct: 67  TISYEAQARLRDPIYGCVAHIFALQQQVMTLQAQLASLKAAAAQ 110

[Close]
BLAST of Carg16869 vs. Swiss-Prot
Match: sp|Q9M2J7|LBD29_ARATH (LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 7.7e-38
Identity = 75/107 (70.09%), Postives = 88/107 (82.24%), Query Frame = 0 

Query: 31  PCGACKFLRRKCVADCIFAPYFSSEQGAARFAAVHKVFGASNVSKLLHHVPAHDRCEAVV 90
           PCGACKFLRRKC   C+FAPYF  EQGA+ FAA+HKVFGASN SKLL H+P  DRCEA +
Sbjct: 11  PCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPISDRCEAAI 70

Query: 91  TIAYEAQARILDPVYGCVAHIFALQQQVACLQAQLMQAKAQLAQTLM 138
           TI+YEAQAR+ DP+YGCV+HIFALQQQV  LQA+L   K Q AQ+++
Sbjct: 71  TISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMI 117

[Close]
BLAST of Carg16869 vs. Swiss-Prot
Match: sp|Q9SRV3|LBD20_ARATH (LOB domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=LBD20 PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.0e-37
Identity = 78/102 (76.47%), Postives = 90/102 (88.24%), Query Frame = 0 

Query: 31  PCGACKFLRRKCVADCIFAPYFSSEQGAARFAAVHKVFGASNVSKLLHHVPAHDRCEAVV 90
           PCGACKFLRRKCV+ CIFAP+F S+QGAARFAAVHKVFGASNVSKLLHH+P + R +AVV
Sbjct: 51  PCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVV 110

Query: 91  TIAYEAQARILDPVYGCVAHIFALQQQVACLQAQLMQAKAQL 133
           TI+YEAQAR+ DPVYGCV+ I ALQQQVA LQA+L   ++QL
Sbjct: 111 TISYEAQARLSDPVYGCVSTILALQQQVASLQAELSVVQSQL 152

[Close]
BLAST of Carg16869 vs. Swiss-Prot
Match: sp|O22131|LBD18_ARATH (LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 SV=2)

HSP 1 Score: 157.9 bits (398), Expect = 1.3e-37
Identity = 79/102 (77.45%), Postives = 86/102 (84.31%), Query Frame = 0 

Query: 32  CGACKFLRRKCVADCIFAPYFSSEQGAARFAAVHKVFGASNVSKLLHHVPAHDRCEAVVT 91
           CGACKFLRRKCV  CIFAPYF SEQG+A FAAVHKVFGASNVSKLL H+P H R +AVVT
Sbjct: 38  CGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVHRRSDAVVT 97

Query: 92  IAYEAQARILDPVYGCVAHIFALQQQVACLQAQLMQAKAQLA 134
           I YEAQARI DP+YGCVAHIFALQQQV  LQA++   +A LA
Sbjct: 98  ICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLA 139

[Close]
BLAST of Carg16869 vs. TrEMBL
Match: tr|A0A1S3CG76|A0A1S3CG76_CUCME (LOB domain-containing protein 16 OS=Cucumis melo OX=3656 GN=LOC103500368 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 3.8e-74
Identity = 161/213 (75.59%), Postives = 174/213 (81.69%), Query Frame = 0 

Query: 31  PCGACKFLRRKCVADCIFAPYFSSEQGAARFAAVHKVFGASNVSKLLHHVPAHDRCEAVV 90
           PCGACKFLRRKCVADCIFAPYF SEQGAARFAA+HKVFGASNVSKLL HVP HDRCEAVV
Sbjct: 25  PCGACKFLRRKCVADCIFAPYFCSEQGAARFAAIHKVFGASNVSKLLLHVPVHDRCEAVV 84

Query: 91  TIAYEAQARILDPVYGCVAHIFALQQQVACLQAQLMQAKAQLAQTLMESGGNMELQWTGS 150
           TIAYEAQARI DPVYGCVAHIFALQQQVA LQ QLMQAKAQLAQTLM+SG NME+QWTG 
Sbjct: 85  TIAYEAQARIHDPVYGCVAHIFALQQQVAYLQTQLMQAKAQLAQTLMDSGSNMEIQWTGD 144

Query: 151 FNN-NLSNG-IP-SNYETQIMNPAVSPQSSVESAANNDAALMFMNH---YQES------- 210
           FNN NLSNG IP +NY+TQIMN   +PQSS+ESAANND AL+F+N    + ES       
Sbjct: 145 FNNSNLSNGSIPNNNYQTQIMNNP-TPQSSLESAANNDEALLFINQNQLFHESQLSRSSQ 204

Query: 211 -----QTLGRRRSASCHGDLGELQALALRMMRN 226
                Q   R++ +S H DLGEL ALALRMMRN
Sbjct: 205 EPQILQPFPRKKLSSSHADLGELHALALRMMRN 236

[Close]
BLAST of Carg16869 vs. TrEMBL
Match: tr|A0A0A0LAE8|A0A0A0LAE8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G398920 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 3.5e-72
Identity = 160/214 (74.77%), Postives = 171/214 (79.91%), Query Frame = 0 

Query: 31  PCGACKFLRRKCVADCIFAPYFSSEQGAARFAAVHKVFGASNVSKLLHHVPAHDRCEAVV 90
           PCGACKFLRRKCVADCIFAPYF SEQGAARFAA+HKVFGASNVSKLL HVP HDRCEAVV
Sbjct: 29  PCGACKFLRRKCVADCIFAPYFCSEQGAARFAAIHKVFGASNVSKLLLHVPVHDRCEAVV 88

Query: 91  TIAYEAQARILDPVYGCVAHIFALQQQVACLQAQLMQAKAQLAQTLMESGGNMELQWTGS 150
           TIAYEAQARI DPVYGCVAHIFALQQQVA LQ QLM AKAQLA+TLM+SG NME+QWTG 
Sbjct: 89  TIAYEAQARIHDPVYGCVAHIFALQQQVAYLQTQLMHAKAQLAETLMDSGSNMEIQWTGD 148

Query: 151 F-NNNLSNG-IPS-NYETQIMNPAVSPQSSVESAANNDAALMFMNH------------YQ 210
           F NNNLSNG IPS NY+TQI N   SPQSS+ESAANND AL+F+N              Q
Sbjct: 149 FNNNNLSNGSIPSNNYQTQITNNP-SPQSSLESAANNDEALLFINQNQLFHESQLSRSSQ 208

Query: 211 ESQTL----GRRRSASCHGDLGELQALALRMMRN 226
           E Q L     ++  +S H DLGEL ALALRMMRN
Sbjct: 209 EPQFLQPFPRKKLPSSSHADLGELHALALRMMRN 241

[Close]
BLAST of Carg16869 vs. TrEMBL
Match: tr|A0A2P5FBB9|A0A2P5FBB9_9ROSA (Lateral organ boundaries domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_092750 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 3.4e-59
Identity = 138/216 (63.89%), Postives = 154/216 (71.30%), Query Frame = 0 

Query: 31  PCGACKFLRRKCVADCIFAPYFSSEQGAARFAAVHKVFGASNVSKLLHHVPAHDRCEAVV 90
           PCGACKFLRRKC ADCIFAPYF SEQG ARFAA+HKVFGASNVSKLL HVP  DRCEAVV
Sbjct: 13  PCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVPDRCEAVV 72

Query: 91  TIAYEAQARILDPVYGCVAHIFALQQQVACLQAQLMQAKAQLAQTLMESGGNME--LQWT 150
           TIAYEAQARI DPVYGCVAHIFALQQQVACLQAQL+QAKAQLAQ  ++   ++E   QW 
Sbjct: 73  TIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLIQAKAQLAQNFIDHSRSVEHNNQWV 132

Query: 151 GSFNN--------NLSNGIPSNYETQIMNPAVSPQSSVESAANNDAALMFMNHYQESQTL 210
           G FNN        NLSN   +N     MN  +SPQSS++S   N + L+   H+ +    
Sbjct: 133 GGFNNVNNGSSGANLSNLYANN---NYMNYPISPQSSLDSVDQNGSDLIMNAHHHQEIQS 192

Query: 211 GRRRS-----ASC------HGDLGELQALALRMMRN 226
           GR  S      +C      +GDLGELQALALRMMRN
Sbjct: 193 GRPNSEDYLVQACSRKRPNNGDLGELQALALRMMRN 225

[Close]
BLAST of Carg16869 vs. TrEMBL
Match: tr|I1N9P5|I1N9P5_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100801508 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.0e-58
Identity = 137/203 (67.49%), Postives = 156/203 (76.85%), Query Frame = 0 

Query: 31  PCGACKFLRRKCVADCIFAPYFSSEQGAARFAAVHKVFGASNVSKLLHHVPAHDRCEAVV 90
           PCGACKFLRRKC ADCIFAPYF SEQG ARFAA+HKVFGASNVSKLL H+PAHDRCEAVV
Sbjct: 16  PCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVV 75

Query: 91  TIAYEAQARILDPVYGCVAHIFALQQQVACLQAQLMQAKAQLAQTLMESGGNMEL--QWT 150
           TIAYEAQARI DPVYGCV+HIFALQQQVACLQAQLMQ KAQLAQ L+ES  N+E   QWT
Sbjct: 76  TIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKAQLAQNLVES-RNIESNHQWT 135

Query: 151 GSFNNNLSNGIPSNYE--TQIMNPAVSPQSSVE----SAANNDAALMFMNHYQESQTLGR 210
           G  NNN  +G P N+      MNP +SPQSS+E    S+ N+  ++  +   ++ Q   +
Sbjct: 136 G--NNNSVSGQPMNHPFCPTYMNP-ISPQSSLESIDHSSINDGMSMQDIQSREDFQIQAK 195

Query: 211 RRSASCHGDLGELQALALRMMRN 226
            R  + + DLGELQ LALRMMRN
Sbjct: 196 ERPYN-NNDLGELQELALRMMRN 213

[Close]
BLAST of Carg16869 vs. TrEMBL
Match: tr|A0A1U8L838|A0A1U8L838_GOSHI (LOB domain-containing protein 16-like OS=Gossypium hirsutum OX=3635 GN=LOC107923642 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.8e-58
Identity = 136/199 (68.34%), Postives = 143/199 (71.86%), Query Frame = 0 

Query: 31  PCGACKFLRRKCVADCIFAPYFSSEQGAARFAAVHKVFGASNVSKLLHHVPAHDRCEAVV 90
           PCGACKFLRRKC +DCIFAPYF SEQG ARFAA+HKVFGASN SKLL H+PAHDRCEAVV
Sbjct: 9   PCGACKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNASKLLLHIPAHDRCEAVV 68

Query: 91  TIAYEAQARILDPVYGCVAHIFALQQQVACLQAQLMQAKAQLAQTLMESGGNMELQWTGS 150
           TIAYEAQARI DPVYGCVAHIFALQQQVA LQ QLMQ KAQLAQ  M S  NME QW G 
Sbjct: 69  TIAYEAQARIRDPVYGCVAHIFALQQQVAYLQGQLMQVKAQLAQNAMNS-HNMESQWQG- 128

Query: 151 FNNNLSNGIPSNYETQIMNPAVSPQSSVESAANNDAALMFMNHYQESQTL----GRRRSA 210
              NLS G         MNP +SPQSS+ES   N A  M M   Q  +      G  R  
Sbjct: 129 ---NLSGGPSIPTYPIYMNP-ISPQSSLESVELNSADNMNMQEIQSREEFSNFHGYSRKR 188

Query: 211 SCHGDLGELQALALRMMRN 226
             + DLGELQALALRMMRN
Sbjct: 189 PYNSDLGELQALALRMMRN 201

The following BLAST results are available for this feature:
BLAST of Carg16869 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022963633.13.4e-10399.49LOB domain-containing protein 16-like [Cucurbita moschata][more]
XP_023511722.16.0e-10097.95LOB domain-containing protein 16-like [Cucurbita pepo subsp. pepo][more]
XP_022967414.13.9e-9996.92LOB domain-containing protein 16-like [Cucurbita maxima][more]
XP_008461877.15.7e-7475.59PREDICTED: LOB domain-containing protein 16 [Cucumis melo][more]
XP_004152037.15.3e-7274.77PREDICTED: LOB domain-containing protein 16 [Cucumis sativus][more]
BLAST of Carg16869 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G42430.11.6e-4651.52lateral organ boundaries-domain 16[more]
AT3G58190.14.2e-3970.09lateral organ boundaries-domain 29[more]
AT3G03760.15.5e-3976.47LOB domain-containing protein 20[more]
AT2G45420.17.2e-3977.45LOB domain-containing protein 18[more]
AT4G00220.12.0e-3681.40Lateral organ boundaries (LOB) domain family protein[more]
BLAST of Carg16869 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SLB7|LBD16_ARATH2.9e-4551.52LOB domain-containing protein 16 OS=Arabidopsis thaliana OX=3702 GN=LBD16 PE=1 S... [more]
sp|Q5UG13|LBD_ORYSJ2.6e-3876.92LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=C... [more]
sp|Q9M2J7|LBD29_ARATH7.7e-3870.09LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 S... [more]
sp|Q9SRV3|LBD20_ARATH1.0e-3776.47LOB domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=LBD20 PE=2 S... [more]
sp|O22131|LBD18_ARATH1.3e-3777.45LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 S... [more]
BLAST of Carg16869 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CG76|A0A1S3CG76_CUCME3.8e-7475.59LOB domain-containing protein 16 OS=Cucumis melo OX=3656 GN=LOC103500368 PE=4 SV... [more]
tr|A0A0A0LAE8|A0A0A0LAE8_CUCSA3.5e-7274.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G398920 PE=4 SV=1[more]
tr|A0A2P5FBB9|A0A2P5FBB9_9ROSA3.4e-5963.89Lateral organ boundaries domain containing protein OS=Trema orientalis OX=63057 ... [more]
tr|I1N9P5|I1N9P5_SOYBN1.0e-5867.49Uncharacterized protein OS=Glycine max OX=3847 GN=100801508 PE=4 SV=1[more]
tr|A0A1U8L838|A0A1U8L838_GOSHI3.8e-5868.34LOB domain-containing protein 16-like OS=Gossypium hirsutum OX=3635 GN=LOC107923... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004883LOB
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg16869-RACarg16869-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 111..138
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17
NoneNo IPR availablePANTHERPTHR31529FAMILY NOT NAMEDcoord: 26..224
NoneNo IPR availablePANTHERPTHR31529:SF4LOB DOMAIN-CONTAINING PROTEIN 16coord: 26..224
IPR004883Lateral organ boundaries, LOBPFAMPF03195LOBcoord: 31..129
e-value: 1.6E-37
score: 127.9
IPR004883Lateral organ boundaries, LOBPROSITEPS50891LOBcoord: 30..132
score: 23.376

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg16869Cla005992Watermelon (97103) v1carwmB0750
Carg16869Csa3G396920Cucumber (Chinese Long) v2carcuB0769
Carg16869MELO3C012908Melon (DHL92) v3.5.1carmeB0744
Carg16869ClCG07G000920Watermelon (Charleston Gray)carwcgB0730
Carg16869CSPI03G22850Wild cucumber (PI 183967)carcpiB0786
Carg16869Cucsa.053440Cucumber (Gy14) v1carcgyB0841
Carg16869CmaCh02G017550Cucurbita maxima (Rimu)carcmaB1051
Carg16869CmaCh19G000790Cucurbita maxima (Rimu)carcmaB1049
Carg16869CmoCh02G018000Cucurbita moschata (Rifu)carcmoB1023
Carg16869CmoCh19G000890Cucurbita moschata (Rifu)carcmoB1021
Carg16869Lsi05G010030Bottle gourd (USVL1VR-Ls)carlsiB689
Carg16869Cp4.1LG15g00690Cucurbita pepo (Zucchini)carcpeB1057
Carg16869Cp4.1LG05g01380Cucurbita pepo (Zucchini)carcpeB1062
Carg16869CsGy3G021850Cucumber (Gy14) v2carcgybB0747
Carg16869MELO3C012908.2Melon (DHL92) v3.6.1carmedB0757
Carg16869CsaV3_3G022570Cucumber (Chinese Long) v3carcucB0789
Carg16869Cla97C07G129200Watermelon (97103) v2carwmbB0788
Carg16869Bhi05G000165Wax gourdcarwgoB0888
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg16869Carg08972Silver-seed gourdcarcarB599
The following block(s) are covering this gene:
GeneOrganismBlock
Carg16869Watermelon (97103) v2carwmbB0787
Carg16869Silver-seed gourdcarcarB262
Carg16869Silver-seed gourdcarcarB272
Carg16869Silver-seed gourdcarcarB600
Carg16869Silver-seed gourdcarcarB601
Carg16869Cucumber (Gy14) v2carcgybB0745
Carg16869Cucumber (Gy14) v1carcgyB0849
Carg16869Cucurbita maxima (Rimu)carcmaB1052
Carg16869Cucurbita moschata (Rifu)carcmoB1025
Carg16869Cucurbita pepo (Zucchini)carcpeB1058
Carg16869Cucurbita pepo (Zucchini)carcpeB1060
Carg16869Wild cucumber (PI 183967)carcpiB0783
Carg16869Wild cucumber (PI 183967)carcpiB0787
Carg16869Cucumber (Chinese Long) v2carcuB0766
Carg16869Cucumber (Chinese Long) v3carcucB0786
Carg16869Cucumber (Chinese Long) v3carcucB0790
Carg16869Bottle gourd (USVL1VR-Ls)carlsiB687
Carg16869Melon (DHL92) v3.5.1carmeB0749
Carg16869Melon (DHL92) v3.6.1carmedB0760
Carg16869Melon (DHL92) v3.6.1carmedB0763
Carg16869Watermelon (Charleston Gray)carwcgB0728
Carg16869Watermelon (97103) v1carwmB0752
Carg16869Watermelon (97103) v1carwmB0753