Carg16869-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGTCTTCTTCTTCTTCTTCTAGTACTGCAAATAGTAGCGTGTCGGGCGGCGGCGGCGGCGGCGGTGGTGGCGGTGGTGGTGGCTCTCCTTGTGGAGCATGCAAGTTTCTGCGGCGGAAATGTGTGGCTGACTGTATTTTTGCACCTTACTTTAGCTCGGAACAAGGGGCTGCAAGATTTGCCGCCGTTCATAAAGTGTTTGGGGCTAGTAATGTGTCTAAGTTGCTGCATCATGTGCCTGCTCATGATCGCTGTGAGGCTGTTGTTACTATTGCTTATGAAGCTCAAGCAAGGATTCTTGACCCTGTTTATGGCTGTGTCGCCCATATTTTTGCTCTCCAACAACAGGTAATTTTGAATATGAATGCAAGATTATGTTTTTGAGGGTTCGGGAAACCTGATCAACCCAATTCGAGCCAAGCGATACGGTTTGGGTTGAGTTACGAACTTGTTTGAACTATTTGAATTGGGTTCAGTTTCAAATAGATGAATATTTTACTTACTCAATTGATTCATGAGTTTCTCTAAGACTAGATAAGGTTCAATCAAATCATCTCGTATTTATGTTAATTTAAAGAAATTATTTTTAAATTTTTTAAAATTTTCATTATCGGATCACTCTCAAAAATGATTTTTAAAAACTATTTTGAAGGTAGTTTTTCGAAATATATATTGAAGTTGAGTTGCACGCGTTAATTAAATATTTAAAAATGAATATGCATCTTAATCAAGGGTGGATTGTGAGATTATACCTGTGTTAGAGAGAGGAATGAAACATTCCTTGTAAGTGTAACATCTCAAACCAATCATTAGTAGATATCGTCCGTTTTAGCCTGTTACGTATTGTCATCAGCTTCACTGGTCTTTGTAACCCTCTCCAACCAATGTGAGATCTCACTATCCACCCCCTTGGGGGTCTAGCGTCCTGGCTAGCACACCGCCCAATATCTGACTCTGATACCATTTGTAATATCTCAAGCCTACCACTAACAGATATTGTCCATTTCATTCTGTTACGTATCGTTGTCAACCTCACAGTTTTTAATTGCATATACTAGGGAGAGATTTTCACATTCTTATAAGAAATGCTTCGTTTCTCTCTCCAACTGATGTGAGATCTCACTTAGCAGACACGTTTTCCATGAGATCGAGGACCAAATCGGACAATATCCACTAGCTGTGGTCTTTGGGCAAAGAAAATTTAAAATGAATAACCTTAATAACTCAAACTAACCTAACAAATTGAGTTGAGTTCATTATTTAAGAAGAGTAGTTTAGATTGAAAAAATTAACAAATCTAACAATTGGATTAGGTCAAAAAGTCTCAATCTGACTCAACCGGACCCACGAACAACAGTACATATACTTCTTTTTAAAATCCTTAAAATGGGTTTTGTTTTTTGTTCTTGAATTTGAAGGTGGCATGCTTACAAGCACAATTGATGCAAGCCAAGGCTCAACTTGCCCAAACCCTGATGGAATCAGGAGGCAACATGGAGCTTCAATGGACAGGAAGCTTCAATAACAATCTCTCCAATGGAATCCCAAGCAATTATGAGACTCAAATTATGAACCCAGCAGTTTCCCCACAGAGCTCAGTGGAATCAGCAGCCAACAACGATGCAGCATTAATGTTCATGAACCATTATCAAGAGAGCCAAACATTGGGTAGAAGAAGATCAGCTTCATGTCATGGTGATCTTGGGGAGCTTCAAGCTTTGGCCCTTAGAATGATGAGAAACTAA ATGGCGTCTTCTTCTTCTTCTTCTAGTACTGCAAATAGTAGCGTGTCGGGCGGCGGCGGCGGCGGCGGTGGTGGCGGTGGTGGTGGCTCTCCTTGTGGAGCATGCAAGTTTCTGCGGCGGAAATGTGTGGCTGACTGTATTTTTGCACCTTACTTTAGCTCGGAACAAGGGGCTGCAAGATTTGCCGCCGTTCATAAAGTGTTTGGGGCTAGTAATGTGTCTAAGTTGCTGCATCATGTGCCTGCTCATGATCGCTGTGAGGCTGTTGTTACTATTGCTTATGAAGCTCAAGCAAGGATTCTTGACCCTGTTTATGGCTGTGTCGCCCATATTTTTGCTCTCCAACAACAGGTGGCATGCTTACAAGCACAATTGATGCAAGCCAAGGCTCAACTTGCCCAAACCCTGATGGAATCAGGAGGCAACATGGAGCTTCAATGGACAGGAAGCTTCAATAACAATCTCTCCAATGGAATCCCAAGCAATTATGAGACTCAAATTATGAACCCAGCAGTTTCCCCACAGAGCTCAGTGGAATCAGCAGCCAACAACGATGCAGCATTAATGTTCATGAACCATTATCAAGAGAGCCAAACATTGGGTAGAAGAAGATCAGCTTCATGTCATGGTGATCTTGGGGAGCTTCAAGCTTTGGCCCTTAGAATGATGAGAAACTAA ATGGCGTCTTCTTCTTCTTCTTCTAGTACTGCAAATAGTAGCGTGTCGGGCGGCGGCGGCGGCGGCGGTGGTGGCGGTGGTGGTGGCTCTCCTTGTGGAGCATGCAAGTTTCTGCGGCGGAAATGTGTGGCTGACTGTATTTTTGCACCTTACTTTAGCTCGGAACAAGGGGCTGCAAGATTTGCCGCCGTTCATAAAGTGTTTGGGGCTAGTAATGTGTCTAAGTTGCTGCATCATGTGCCTGCTCATGATCGCTGTGAGGCTGTTGTTACTATTGCTTATGAAGCTCAAGCAAGGATTCTTGACCCTGTTTATGGCTGTGTCGCCCATATTTTTGCTCTCCAACAACAGGTGGCATGCTTACAAGCACAATTGATGCAAGCCAAGGCTCAACTTGCCCAAACCCTGATGGAATCAGGAGGCAACATGGAGCTTCAATGGACAGGAAGCTTCAATAACAATCTCTCCAATGGAATCCCAAGCAATTATGAGACTCAAATTATGAACCCAGCAGTTTCCCCACAGAGCTCAGTGGAATCAGCAGCCAACAACGATGCAGCATTAATGTTCATGAACCATTATCAAGAGAGCCAAACATTGGGTAGAAGAAGATCAGCTTCATGTCATGGTGATCTTGGGGAGCTTCAAGCTTTGGCCCTTAGAATGATGAGAAACTAA MASSSSSSSTANSSVSGGGGGGGGGGGGGSPCGACKFLRRKCVADCIFAPYFSSEQGAARFAAVHKVFGASNVSKLLHHVPAHDRCEAVVTIAYEAQARILDPVYGCVAHIFALQQQVACLQAQLMQAKAQLAQTLMESGGNMELQWTGSFNNNLSNGIPSNYETQIMNPAVSPQSSVESAANNDAALMFMNHYQESQTLGRRRSASCHGDLGELQALALRMMRN
BLAST of Carg16869-RA vs. NCBI nr
Match: XP_022963633.1 (LOB domain-containing protein 16-like [Cucurbita moschata]) HSP 1 Score: 384.0 bits (985), Expect = 3.4e-103 Identity = 194/195 (99.49%), Postives = 195/195 (100.00%), Query Frame = 0
BLAST of Carg16869-RA vs. NCBI nr
Match: XP_023511722.1 (LOB domain-containing protein 16-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 373.2 bits (957), Expect = 6.0e-100 Identity = 191/195 (97.95%), Postives = 192/195 (98.46%), Query Frame = 0
BLAST of Carg16869-RA vs. NCBI nr
Match: XP_022967414.1 (LOB domain-containing protein 16-like [Cucurbita maxima]) HSP 1 Score: 370.5 bits (950), Expect = 3.9e-99 Identity = 189/195 (96.92%), Postives = 191/195 (97.95%), Query Frame = 0
BLAST of Carg16869-RA vs. NCBI nr
Match: XP_008461877.1 (PREDICTED: LOB domain-containing protein 16 [Cucumis melo]) HSP 1 Score: 287.0 bits (733), Expect = 5.7e-74 Identity = 161/213 (75.59%), Postives = 174/213 (81.69%), Query Frame = 0
BLAST of Carg16869-RA vs. NCBI nr
Match: XP_004152037.1 (PREDICTED: LOB domain-containing protein 16 [Cucumis sativus]) HSP 1 Score: 280.4 bits (716), Expect = 5.3e-72 Identity = 160/214 (74.77%), Postives = 171/214 (79.91%), Query Frame = 0
BLAST of Carg16869-RA vs. TAIR10
Match: AT2G42430.1 (lateral organ boundaries-domain 16) HSP 1 Score: 183.3 bits (464), Expect = 1.6e-46 Identity = 119/231 (51.52%), Postives = 138/231 (59.74%), Query Frame = 0
BLAST of Carg16869-RA vs. TAIR10
Match: AT3G58190.1 (lateral organ boundaries-domain 29) HSP 1 Score: 158.7 bits (400), Expect = 4.2e-39 Identity = 75/107 (70.09%), Postives = 88/107 (82.24%), Query Frame = 0
BLAST of Carg16869-RA vs. TAIR10
Match: AT3G03760.1 (LOB domain-containing protein 20) HSP 1 Score: 158.3 bits (399), Expect = 5.5e-39 Identity = 78/102 (76.47%), Postives = 90/102 (88.24%), Query Frame = 0
BLAST of Carg16869-RA vs. TAIR10
Match: AT2G45420.1 (LOB domain-containing protein 18) HSP 1 Score: 157.9 bits (398), Expect = 7.2e-39 Identity = 79/102 (77.45%), Postives = 86/102 (84.31%), Query Frame = 0
BLAST of Carg16869-RA vs. TAIR10
Match: AT4G00220.1 (Lateral organ boundaries (LOB) domain family protein) HSP 1 Score: 149.8 bits (377), Expect = 2.0e-36 Identity = 70/86 (81.40%), Postives = 77/86 (89.53%), Query Frame = 0
BLAST of Carg16869-RA vs. Swiss-Prot
Match: sp|Q9SLB7|LBD16_ARATH (LOB domain-containing protein 16 OS=Arabidopsis thaliana OX=3702 GN=LBD16 PE=1 SV=1) HSP 1 Score: 183.3 bits (464), Expect = 2.9e-45 Identity = 119/231 (51.52%), Postives = 138/231 (59.74%), Query Frame = 0
BLAST of Carg16869-RA vs. Swiss-Prot
Match: sp|Q5UG13|LBD_ORYSJ (LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=CRL1 PE=1 SV=1) HSP 1 Score: 160.2 bits (404), Expect = 2.6e-38 Identity = 80/104 (76.92%), Postives = 86/104 (82.69%), Query Frame = 0
BLAST of Carg16869-RA vs. Swiss-Prot
Match: sp|Q9M2J7|LBD29_ARATH (LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 SV=1) HSP 1 Score: 158.7 bits (400), Expect = 7.7e-38 Identity = 75/107 (70.09%), Postives = 88/107 (82.24%), Query Frame = 0
BLAST of Carg16869-RA vs. Swiss-Prot
Match: sp|Q9SRV3|LBD20_ARATH (LOB domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=LBD20 PE=2 SV=1) HSP 1 Score: 158.3 bits (399), Expect = 1.0e-37 Identity = 78/102 (76.47%), Postives = 90/102 (88.24%), Query Frame = 0
BLAST of Carg16869-RA vs. Swiss-Prot
Match: sp|O22131|LBD18_ARATH (LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 SV=2) HSP 1 Score: 157.9 bits (398), Expect = 1.3e-37 Identity = 79/102 (77.45%), Postives = 86/102 (84.31%), Query Frame = 0
BLAST of Carg16869-RA vs. TrEMBL
Match: tr|A0A1S3CG76|A0A1S3CG76_CUCME (LOB domain-containing protein 16 OS=Cucumis melo OX=3656 GN=LOC103500368 PE=4 SV=1) HSP 1 Score: 287.0 bits (733), Expect = 3.8e-74 Identity = 161/213 (75.59%), Postives = 174/213 (81.69%), Query Frame = 0
BLAST of Carg16869-RA vs. TrEMBL
Match: tr|A0A0A0LAE8|A0A0A0LAE8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G398920 PE=4 SV=1) HSP 1 Score: 280.4 bits (716), Expect = 3.5e-72 Identity = 160/214 (74.77%), Postives = 171/214 (79.91%), Query Frame = 0
BLAST of Carg16869-RA vs. TrEMBL
Match: tr|A0A2P5FBB9|A0A2P5FBB9_9ROSA (Lateral organ boundaries domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_092750 PE=4 SV=1) HSP 1 Score: 237.3 bits (604), Expect = 3.4e-59 Identity = 138/216 (63.89%), Postives = 154/216 (71.30%), Query Frame = 0
BLAST of Carg16869-RA vs. TrEMBL
Match: tr|I1N9P5|I1N9P5_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100801508 PE=4 SV=1) HSP 1 Score: 235.7 bits (600), Expect = 1.0e-58 Identity = 137/203 (67.49%), Postives = 156/203 (76.85%), Query Frame = 0
BLAST of Carg16869-RA vs. TrEMBL
Match: tr|A0A1U8L838|A0A1U8L838_GOSHI (LOB domain-containing protein 16-like OS=Gossypium hirsutum OX=3635 GN=LOC107923642 PE=4 SV=1) HSP 1 Score: 233.8 bits (595), Expect = 3.8e-58 Identity = 136/199 (68.34%), Postives = 143/199 (71.86%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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