Cucsa.053440 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTCTTCTTCTTCTACATCCACCAACACAAGCATGTCGGGGGGAGGTGGCGGCAGTGGCAGTGGCGGTGGCGGTGGTTCCCCGTGTGGAGCATGCAAGTTTCTAAGGAGAAAATGTGTGGCTGATTGTATATTTGCTCCTTATTTTTGTTCAGAACAAGGGGCTGCACGATTTGCTGCCATTCATAAGGTCTTTGGAGCAAGTAATGTCTCAAAGTTGTTGCTTCATGTTCCTGTTCATGATCGTTGTGAAGCTGTTGTTACTATTGCCTATGAAGCTCAAGCAAGGATTCACGATCCTGTTTATGGTTGTGTTGCTCATATTTTTGCTCTTCAACAACAGGTGTCAATCATTTTGTTTTtCTTTAGTTATCATCACTTATTAGCTCGATCAGATTCATTGTCGTTTAATTTTCTGGTGATGAATGATTAAGAATATGAATAAAAGATCTGTTTTTTtAGGCTAGCTCTGTTTGAGTTTTTAATATTAAAAACCTAACAATATAACTATTTAATTCATTTGTGAATTTCCTGGTTTCGTTATTTGATTTAATTTATTTAGGCCATTTTTCAAAAGTAAAATTAAAGTTTCATAATTTCAAAGTGAAAAAAATGAGAATTAATTGTGCTGTTCTTTAAATTTAGCTAAGAATTTGAAATGTTTTTCCCCTTCGAATAAGACTAATTAAAACCTTGTAGAACAAGGGTGAAAAAACAAATAGAAACAGAAAATTTAAAAACAAATGATAGTTAATTGGAGCCTAAAAGTTAGATTAATTTTTtATAACCCATACAAATTTTTtAGCTTAGTGGCGATCGTCTATTGAAAAaCTACACAACAaTAATTTTTtGTTTtGCTGTTTGTTTTCATTGTGAAAGCCAAAGAAAAAAaGAAAAAAAAaTCATATTGGAGATGCAAAATTTCACCTGATTAATCCATTAATCTAAGTGAGAACTTTAAAAGCATCAACTTTTTAAtCTATAAAACAAGTCCTCTCTTTTCTTTTCTCACGCGATTCAAGGTTAGTTTGAATTGTCTTTTAATCAAACTTCGAGACAAACAGACGTTCTGAATTACAAGTTTGAACTGAAGGAATTTATTTATTTTtGGTTTTtGAAGGTGGCATACTTGCAAACACAGCTGATGCATGCCAAGGCTCAACTTGCAGAAACCCTAATGGATTCAGGAAGTAATATGGAGATTCAATGGACAGGCGATTTCAATAACAACAATCTCTCCAATGGATCAATTCCAAGTAATAATTATCAAACTCAAATTACGAACAACCCAAGCCCaCAAAGCTCTCTAGAATCAGCTGCCAACAATGATGAAGCATTGTTATTCATTAATCAAAATCAATTATTtCATGAGAGCCAATTAAGCAGATCATCACAAGAACCTCAATTTCTTCAACCATTTCCCAGAAAAAAaTTACCTTCTTCTTCTCATGCTGATCTTGGGGAACTCCATGCTTTGGCCCTTAGAATGATGAGAAATTAATTAATTGATGAAGAAAAAAGTCATGTGTAATTTTGTGAAGTACAGTGGATTTTGATGATATATCTATAGTC ATGGCTTCTTCTTCTTCTACATCCACCAACACAAGCATGTCGGGGGGAGGTGGCGGCAGTGGCAGTGGCGGTGGCGGTGGTTCCCCGTGTGGAGCATGCAAGTTTCTAAGGAGAAAATGTGTGGCTGATTGTATATTTGCTCCTTATTTTTGTTCAGAACAAGGGGCTGCACGATTTGCTGCCATTCATAAGGTCTTTGGAGCAAGTAATGTCTCAAAGTTGTTGCTTCATGTTCCTGTTCATGATCGTTGTGAAGCTGTTGTTACTATTGCCTATGAAGCTCAAGCAAGGATTCACGATCCTGTTTATGGTTGTGTTGCTCATATTTTTGCTCTTCAACAACAGGTGGCATACTTGCAAACACAGCTGATGCATGCCAAGGCTCAACTTGCAGAAACCCTAATGGATTCAGGAAGTAATATGGAGATTCAATGGACAGGCGATTTCAATAACAACAATCTCTCCAATGGATCAATTCCAAGTAATAATTATCAAACTCAAATTACGAACAACCCAAGCCCACAAAGCTCTCTAGAATCAGCTGCCAACAATGATGAAGCATTGTTATTCATTAATCAAAATCAATTATTTCATGAGAGCCAATTAAGCAGATCATCACAAGAACCTCAATTTCTTCAACCATTTCCCAGAAAAAAATTACCTTCTTCTTCTCATGCTGATCTTGGGGAACTCCATGCTTTGGCCCTTAGAATGATGAGAAATTAATTAATTGATGAAGAAAAAAGTCATGTGTAATTTTGTGAAGTACAGTGGATTTTGATGATATATCTATAGTC ATGGCTTCTTCTTCTTCTACATCCACCAACACAAGCATGTCGGGGGGAGGTGGCGGCAGTGGCAGTGGCGGTGGCGGTGGTTCCCCGTGTGGAGCATGCAAGTTTCTAAGGAGAAAATGTGTGGCTGATTGTATATTTGCTCCTTATTTTTGTTCAGAACAAGGGGCTGCACGATTTGCTGCCATTCATAAGGTCTTTGGAGCAAGTAATGTCTCAAAGTTGTTGCTTCATGTTCCTGTTCATGATCGTTGTGAAGCTGTTGTTACTATTGCCTATGAAGCTCAAGCAAGGATTCACGATCCTGTTTATGGTTGTGTTGCTCATATTTTTGCTCTTCAACAACAGGTGGCATACTTGCAAACACAGCTGATGCATGCCAAGGCTCAACTTGCAGAAACCCTAATGGATTCAGGAAGTAATATGGAGATTCAATGGACAGGCGATTTCAATAACAACAATCTCTCCAATGGATCAATTCCAAGTAATAATTATCAAACTCAAATTACGAACAACCCAAGCCCaCAAAGCTCTCTAGAATCAGCTGCCAACAATGATGAAGCATTGTTATTCATTAATCAAAATCAATTATTtCATGAGAGCCAATTAAGCAGATCATCACAAGAACCTCAATTTCTTCAACCATTTCCCAGAAAAAAaTTACCTTCTTCTTCTCATGCTGATCTTGGGGAACTCCATGCTTTGGCCCTTAGAATGATGAGAAATTAA MASSSSTSTNTSMSGGGGGSGSGGGGGSPCGACKFLRRKCVADCIFAPYFCSEQGAARFAAIHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARIHDPVYGCVAHIFALQQQVAYLQTQLMHAKAQLAETLMDSGSNMEIQWTGDFNNNNLSNGSIPSNNYQTQITNNPSPQSSLESAANNDEALLFINQNQLFHESQLSRSSQEPQFLQPFPRKKLPSSSHADLGELHALALRMMRN*
BLAST of Cucsa.053440 vs. Swiss-Prot
Match: LBD16_ARATH (LOB domain-containing protein 16 OS=Arabidopsis thaliana GN=LBD16 PE=1 SV=1) HSP 1 Score: 229.6 bits (584), Expect = 3.7e-59 Identity = 133/241 (55.19%), Postives = 161/241 (66.80%), Query Frame = 1
BLAST of Cucsa.053440 vs. Swiss-Prot
Match: LBD18_ARATH (LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18 PE=1 SV=2) HSP 1 Score: 192.2 bits (487), Expect = 6.6e-48 Identity = 95/138 (68.84%), Postives = 107/138 (77.54%), Query Frame = 1
BLAST of Cucsa.053440 vs. Swiss-Prot
Match: LBD30_ARATH (LOB domain-containing protein 30 OS=Arabidopsis thaliana GN=LBD30 PE=2 SV=1) HSP 1 Score: 179.5 bits (454), Expect = 4.4e-44 Identity = 86/119 (72.27%), Postives = 97/119 (81.51%), Query Frame = 1
BLAST of Cucsa.053440 vs. Swiss-Prot
Match: LBD29_ARATH (LOB domain-containing protein 29 OS=Arabidopsis thaliana GN=LBD29 PE=2 SV=1) HSP 1 Score: 174.1 bits (440), Expect = 1.9e-42 Identity = 79/120 (65.83%), Postives = 95/120 (79.17%), Query Frame = 1
BLAST of Cucsa.053440 vs. Swiss-Prot
Match: LBD20_ARATH (LOB domain-containing protein 20 OS=Arabidopsis thaliana GN=LBD20 PE=2 SV=1) HSP 1 Score: 170.6 bits (431), Expect = 2.1e-41 Identity = 95/184 (51.63%), Postives = 122/184 (66.30%), Query Frame = 1
BLAST of Cucsa.053440 vs. TrEMBL
Match: A0A0A0LAE8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G398920 PE=4 SV=1) HSP 1 Score: 489.2 bits (1258), Expect = 2.9e-135 Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 1
BLAST of Cucsa.053440 vs. TrEMBL
Match: B9S4L6_RICCO (LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_0993260 PE=4 SV=1) HSP 1 Score: 258.5 bits (659), Expect = 8.4e-66 Identity = 141/222 (63.51%), Postives = 159/222 (71.62%), Query Frame = 1
BLAST of Cucsa.053440 vs. TrEMBL
Match: A0A022PQA0_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a020441mg PE=4 SV=1) HSP 1 Score: 256.1 bits (653), Expect = 4.2e-65 Identity = 145/246 (58.94%), Postives = 162/246 (65.85%), Query Frame = 1
BLAST of Cucsa.053440 vs. TrEMBL
Match: A0A067JP72_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21800 PE=4 SV=1) HSP 1 Score: 248.4 bits (633), Expect = 8.7e-63 Identity = 143/232 (61.64%), Postives = 157/232 (67.67%), Query Frame = 1
BLAST of Cucsa.053440 vs. TrEMBL
Match: A0A061DWW2_THECC (Lateral organ boundaries-domain 16 OS=Theobroma cacao GN=TCM_004106 PE=4 SV=1) HSP 1 Score: 245.7 bits (626), Expect = 5.6e-62 Identity = 139/222 (62.61%), Postives = 155/222 (69.82%), Query Frame = 1
BLAST of Cucsa.053440 vs. TAIR10
Match: AT2G42430.1 (AT2G42430.1 lateral organ boundaries-domain 16) HSP 1 Score: 229.6 bits (584), Expect = 2.1e-60 Identity = 133/241 (55.19%), Postives = 161/241 (66.80%), Query Frame = 1
BLAST of Cucsa.053440 vs. TAIR10
Match: AT2G45420.1 (AT2G45420.1 LOB domain-containing protein 18) HSP 1 Score: 192.2 bits (487), Expect = 3.7e-49 Identity = 95/138 (68.84%), Postives = 107/138 (77.54%), Query Frame = 1
BLAST of Cucsa.053440 vs. TAIR10
Match: AT4G00220.1 (AT4G00220.1 Lateral organ boundaries (LOB) domain family protein) HSP 1 Score: 179.5 bits (454), Expect = 2.5e-45 Identity = 86/119 (72.27%), Postives = 97/119 (81.51%), Query Frame = 1
BLAST of Cucsa.053440 vs. TAIR10
Match: AT3G58190.1 (AT3G58190.1 lateral organ boundaries-domain 29) HSP 1 Score: 174.1 bits (440), Expect = 1.1e-43 Identity = 79/120 (65.83%), Postives = 95/120 (79.17%), Query Frame = 1
BLAST of Cucsa.053440 vs. TAIR10
Match: AT3G03760.1 (AT3G03760.1 LOB domain-containing protein 20) HSP 1 Score: 170.6 bits (431), Expect = 1.2e-42 Identity = 95/184 (51.63%), Postives = 122/184 (66.30%), Query Frame = 1
BLAST of Cucsa.053440 vs. NCBI nr
Match: gi|700202801|gb|KGN57934.1| (hypothetical protein Csa_3G398920 [Cucumis sativus]) HSP 1 Score: 489.2 bits (1258), Expect = 4.2e-135 Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 1
BLAST of Cucsa.053440 vs. NCBI nr
Match: gi|449468656|ref|XP_004152037.1| (PREDICTED: LOB domain-containing protein 16 [Cucumis sativus]) HSP 1 Score: 468.4 bits (1204), Expect = 7.6e-129 Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 1
BLAST of Cucsa.053440 vs. NCBI nr
Match: gi|659123856|ref|XP_008461877.1| (PREDICTED: LOB domain-containing protein 16 [Cucumis melo]) HSP 1 Score: 448.0 bits (1151), Expect = 1.1e-122 Identity = 226/241 (93.78%), Postives = 231/241 (95.85%), Query Frame = 1
BLAST of Cucsa.053440 vs. NCBI nr
Match: gi|255560007|ref|XP_002521022.1| (PREDICTED: LOB domain-containing protein 16 [Ricinus communis]) HSP 1 Score: 258.5 bits (659), Expect = 1.2e-65 Identity = 141/222 (63.51%), Postives = 159/222 (71.62%), Query Frame = 1
BLAST of Cucsa.053440 vs. NCBI nr
Match: gi|694383495|ref|XP_009367705.1| (PREDICTED: LOB domain-containing protein 16 [Pyrus x bretschneideri]) HSP 1 Score: 257.3 bits (656), Expect = 2.7e-65 Identity = 148/230 (64.35%), Postives = 165/230 (71.74%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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