Carg16642 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16642
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ribosomal L1 domain-containing protein 1-like
Location	Cucurbita_argyrosperma_scaffold_064 : 270727 .. 272067 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCGTCGGATTCTGTTGCCCTTTCTTCCAGAGTTCGTCGGGAAACGGCGGAGAAAGCCGTTGAGTCTCTTCTTCAATGGCGAAATTCGAAACGAGAGAAACCTCAACTCTTCGACCAGGAAGATTTTTTGTACCTTGTTGTAGCCCTAAAGAAGATACCTCCCAAAGGTCGCACAAACCCTTACAAAATCCCTCTCCCGCATTCCTTCCGCTCCGATTCTTCTGAAATCTGCCTCATAATTGACGACAGAAGCAGGTCCAATCTTACCAAAGATGAGGCCAGGAAGAAAATTCAGTCGGAGAATATCCCAATCTCGAAGGTCATCAAGTTGTCGAAGCTTAAATCCGACTACCGTCCCTTTGAAGCTAAACGAAAGCTCTGTGATTCGTACGATATGTTTTTCGCCGATGATCGGGTTATTCCGCTGCTGCCGAGTCTGTTGGGGAAGCACTTCTACAAGAAGAAGAAGATTCCGGTGCCGTTGAATTTGAGGCATAAGAATTGGAAAGAACAGATCGAGAGGAGCTGTTCATCGGCTTTGTTGTATTTGAGGACAGGTACTTGTAGTGTAGTGAAAGTAGCAAAGACTTCGATGGAAGTTGAAGAAATAGTGAGTAATGTGATTGCGGCCATTGATGGGATTGCCGAGATTGTGCCTAAAAAGTGGAGTAATGTGCGGTCATTTCATTTGAAGGTCCTGGAATCGATTGCATTGCCAATTTACCAGACAGTGCCGGAGTTGAAGTTGAAGATTGATGCTGCCGTGAAGGGGGAAGAAAAGGGAACAGAAAAAGAAGATGAAGCAGGAAAGAGTCCTACTCCTGTGAAGGTTAGCAACAAAAAAGAGAAGAAATCGAGCATGAAAAAGGGGAGGATACATGAAGTTCGCTATATGGACAGTAATGGCGGAGAGTTGTCTGATGAAGATGACCTGAACGGCGATCTTGATGAAGACATGGATAATGCTGAGGTTAGTGAGAATCTCAAAAAGGGTAGTGATGAATTGAAGCGTAAGACACGGAGTAGAGTGAACAAAGGAAAAGAAGAGCTCCAAAATGACTTGAATTCTGAGAAAACATTGAAGAAATCAACTGTTGTGAAGAAAGATGACAGTGTCAAACAAAAAAAGGATAAGATATCTGCAAAGAAGGATGATACTGTCAAACAAAAAAAAGATAAGGTAGCTGCAAAGAAGAAGGATGGAGGTAATATCAAGCAAAAGGAAGTTGAAGATGAAGGGTCTGCTGGGAAGAAGGTAAAAAAGAGTGGGGTTTCGAAGTCGAAAACTGCTGATGGAACAAAGGTGAAGACAAAGAAATTGAAAGCGATGAAGTGA

mRNA sequence

ATGGCGTCGTCGGATTCTGTTGCCCTTTCTTCCAGAGTTCGTCGGGAAACGGCGGAGAAAGCCGTTGAGTCTCTTCTTCAATGGCGAAATTCGAAACGAGAGAAACCTCAACTCTTCGACCAGGAAGATTTTTTGTACCTTGTTGTAGCCCTAAAGAAGATACCTCCCAAAGGTCGCACAAACCCTTACAAAATCCCTCTCCCGCATTCCTTCCGCTCCGATTCTTCTGAAATCTGCCTCATAATTGACGACAGAAGCAGGTCCAATCTTACCAAAGATGAGGCCAGGAAGAAAATTCAGTCGGAGAATATCCCAATCTCGAAGGTCATCAAGTTGTCGAAGCTTAAATCCGACTACCGTCCCTTTGAAGCTAAACGAAAGCTCTGTGATTCGTACGATATGTTTTTCGCCGATGATCGGGTTATTCCGCTGCTGCCGAGTCTGTTGGGGAAGCACTTCTACAAGAAGAAGAAGATTCCGGTGCCGTTGAATTTGAGGCATAAGAATTGGAAAGAACAGATCGAGAGGAGCTGTTCATCGGCTTTGTTGTATTTGAGGACAGGTACTTGTAGTGTAGTGAAAGTAGCAAAGACTTCGATGGAAGTTGAAGAAATAGTGAGTAATGTGATTGCGGCCATTGATGGGATTGCCGAGATTGTGCCTAAAAAGTGGAGTAATGTGCGGTCATTTCATTTGAAGGTCCTGGAATCGATTGCATTGCCAATTTACCAGACAGTGCCGGAGTTGAAGTTGAAGATTGATGCTGCCGTGAAGGGGGAAGAAAAGGGAACAGAAAAAGAAGATGAAGCAGGAAAGAGTCCTACTCCTGTGAAGGTTAGCAACAAAAAAGAGAAGAAATCGAGCATGAAAAAGGGGAGGATACATGAAGTTCGCTATATGGACAGTAATGGCGGAGAGTTGTCTGATGAAGATGACCTGAACGGCGATCTTGATGAAGACATGGATAATGCTGAGGTTAGTGAGAATCTCAAAAAGGGTAGTGATGAATTGAAGCGTAAGACACGGAGTAGAGTGAACAAAGGAAAAGAAGAGCTCCAAAATGACTTGAATTCTGAGAAAACATTGAAGAAATCAACTGTTGTGAAGAAAGATGACAGTGTCAAACAAAAAAAGGATAAGATATCTGCAAAGAAGGATGATACTGTCAAACAAAAAAAAGATAAGGTAGCTGCAAAGAAGAAGGATGGAGGTAATATCAAGCAAAAGGAAGTTGAAGATGAAGGGTCTGCTGGGAAGAAGGTAAAAAAGAGTGGGGTTTCGAAGTCGAAAACTGCTGATGGAACAAAGGTGAAGACAAAGAAATTGAAAGCGATGAAGTGA

Coding sequence (CDS)

ATGGCGTCGTCGGATTCTGTTGCCCTTTCTTCCAGAGTTCGTCGGGAAACGGCGGAGAAAGCCGTTGAGTCTCTTCTTCAATGGCGAAATTCGAAACGAGAGAAACCTCAACTCTTCGACCAGGAAGATTTTTTGTACCTTGTTGTAGCCCTAAAGAAGATACCTCCCAAAGGTCGCACAAACCCTTACAAAATCCCTCTCCCGCATTCCTTCCGCTCCGATTCTTCTGAAATCTGCCTCATAATTGACGACAGAAGCAGGTCCAATCTTACCAAAGATGAGGCCAGGAAGAAAATTCAGTCGGAGAATATCCCAATCTCGAAGGTCATCAAGTTGTCGAAGCTTAAATCCGACTACCGTCCCTTTGAAGCTAAACGAAAGCTCTGTGATTCGTACGATATGTTTTTCGCCGATGATCGGGTTATTCCGCTGCTGCCGAGTCTGTTGGGGAAGCACTTCTACAAGAAGAAGAAGATTCCGGTGCCGTTGAATTTGAGGCATAAGAATTGGAAAGAACAGATCGAGAGGAGCTGTTCATCGGCTTTGTTGTATTTGAGGACAGGTACTTGTAGTGTAGTGAAAGTAGCAAAGACTTCGATGGAAGTTGAAGAAATAGTGAGTAATGTGATTGCGGCCATTGATGGGATTGCCGAGATTGTGCCTAAAAAGTGGAGTAATGTGCGGTCATTTCATTTGAAGGTCCTGGAATCGATTGCATTGCCAATTTACCAGACAGTGCCGGAGTTGAAGTTGAAGATTGATGCTGCCGTGAAGGGGGAAGAAAAGGGAACAGAAAAAGAAGATGAAGCAGGAAAGAGTCCTACTCCTGTGAAGGTTAGCAACAAAAAAGAGAAGAAATCGAGCATGAAAAAGGGGAGGATACATGAAGTTCGCTATATGGACAGTAATGGCGGAGAGTTGTCTGATGAAGATGACCTGAACGGCGATCTTGATGAAGACATGGATAATGCTGAGGTTAGTGAGAATCTCAAAAAGGGTAGTGATGAATTGAAGCGTAAGACACGGAGTAGAGTGAACAAAGGAAAAGAAGAGCTCCAAAATGACTTGAATTCTGAGAAAACATTGAAGAAATCAACTGTTGTGAAGAAAGATGACAGTGTCAAACAAAAAAAGGATAAGATATCTGCAAAGAAGGATGATACTGTCAAACAAAAAAAAGATAAGGTAGCTGCAAAGAAGAAGGATGGAGGTAATATCAAGCAAAAGGAAGTTGAAGATGAAGGGTCTGCTGGGAAGAAGGTAAAAAAGAGTGGGGTTTCGAAGTCGAAAACTGCTGATGGAACAAAGGTGAAGACAAAGAAATTGAAAGCGATGAAGTGA

Protein sequence

MASSDSVALSSRVRRETAEKAVESLLQWRNSKREKPQLFDQEDFLYLVVALKKIPPKGRTNPYKIPLPHSFRSDSSEICLIIDDRSRSNLTKDEARKKIQSENIPISKVIKLSKLKSDYRPFEAKRKLCDSYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIERSCSSALLYLRTGTCSVVKVAKTSMEVEEIVSNVIAAIDGIAEIVPKKWSNVRSFHLKVLESIALPIYQTVPELKLKIDAAVKGEEKGTEKEDEAGKSPTPVKVSNKKEKKSSMKKGRIHEVRYMDSNGGELSDEDDLNGDLDEDMDNAEVSENLKKGSDELKRKTRSRVNKGKEELQNDLNSEKTLKKSTVVKKDDSVKQKKDKISAKKDDTVKQKKDKVAAKKKDGGNIKQKEVEDEGSAGKKVKKSGVSKSKTADGTKVKTKKLKAMK

Homology

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BLAST of Carg16642 vs. NCBI nr
Match: XP_022928870.1 (ribosomal L1 domain-containing protein 1-like [Cucurbita moschata])

HSP 1 Score: 647.5 bits (1669), Expect = 3.3e-182
Identity = 341/341 (100.00%), Postives = 341/341 (100.00%), Query Frame = 0


Query: 1   MASSDSVALSSRVRRETAEKAVESLLQWRNSKREKPQLFDQEDFLYLVVALKKIPPKGRT 60
           MASSDSVALSSRVRRETAEKAVESLLQWRNSKREKPQLFDQEDFLYLVVALKKIPPKGRT
Sbjct: 1   MASSDSVALSSRVRRETAEKAVESLLQWRNSKREKPQLFDQEDFLYLVVALKKIPPKGRT 60

Query: 61  NPYKIPLPHSFRSDSSEICLIIDDRSRSNLTKDEARKKIQSENIPISKVIKLSKLKSDYR 120
           NPYKIPLPHSFRSDSSEICLIIDDRSRSNLTKDEARKKIQSENIPISKVIKLSKLKSDYR
Sbjct: 61  NPYKIPLPHSFRSDSSEICLIIDDRSRSNLTKDEARKKIQSENIPISKVIKLSKLKSDYR 120

Query: 121 PFEAKRKLCDSYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIERSCSS 180
           PFEAKRKLCDSYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIERSCSS
Sbjct: 121 PFEAKRKLCDSYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIERSCSS 180

Query: 181 ALLYLRTGTCSVVKVAKTSMEVEEIVSNVIAAIDGIAEIVPKKWSNVRSFHLKVLESIAL 240
           ALLYLRTGTCSVVKVAKTSMEVEEIVSNVIAAIDGIAEIVPKKWSNVRSFHLKVLESIAL
Sbjct: 181 ALLYLRTGTCSVVKVAKTSMEVEEIVSNVIAAIDGIAEIVPKKWSNVRSFHLKVLESIAL 240

Query: 241 PIYQTVPELKLKIDAAVKGEEKGTEKEDEAGKSPTPVKVSNKKEKKSSMKKGRIHEVRYM 300
           PIYQTVPELKLKIDAAVKGEEKGTEKEDEAGKSPTPVKVSNKKEKKSSMKKGRIHEVRYM
Sbjct: 241 PIYQTVPELKLKIDAAVKGEEKGTEKEDEAGKSPTPVKVSNKKEKKSSMKKGRIHEVRYM 300

Query: 301 DSNGGELSDEDDLNGDLDEDMDNAEVSENLKKGSDELKRKT 342
           DSNGGELSDEDDLNGDLDEDMDNAEVSENLKKGSDELKRKT
Sbjct: 301 DSNGGELSDEDDLNGDLDEDMDNAEVSENLKKGSDELKRKT 341

[Close]

BLAST of Carg16642 vs. NCBI nr
Match: XP_023549753.1 (ribosomal L1 domain-containing protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 640.2 bits (1650), Expect = 5.3e-180
Identity = 337/341 (98.83%), Postives = 339/341 (99.41%), Query Frame = 0


Query: 1   MASSDSVALSSRVRRETAEKAVESLLQWRNSKREKPQLFDQEDFLYLVVALKKIPPKGRT 60
           MASSDSVALSSRVRRETAEKAVESLLQWRNSKREKPQLFDQEDFLYLVVALKKIPPKGRT
Sbjct: 1   MASSDSVALSSRVRRETAEKAVESLLQWRNSKREKPQLFDQEDFLYLVVALKKIPPKGRT 60

Query: 61  NPYKIPLPHSFRSDSSEICLIIDDRSRSNLTKDEARKKIQSENIPISKVIKLSKLKSDYR 120
           NPYKIPLPHSFRSDSSEICLIIDDRSRSNLTKD+ARKKIQ ENIPISKVIKLSKLKSDYR
Sbjct: 61  NPYKIPLPHSFRSDSSEICLIIDDRSRSNLTKDDARKKIQLENIPISKVIKLSKLKSDYR 120

Query: 121 PFEAKRKLCDSYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIERSCSS 180
           PFEAKRKLCDSYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIERSCSS
Sbjct: 121 PFEAKRKLCDSYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIERSCSS 180

Query: 181 ALLYLRTGTCSVVKVAKTSMEVEEIVSNVIAAIDGIAEIVPKKWSNVRSFHLKVLESIAL 240
           ALLYLRTGTCSVVKVAKTSMEVEEIVSNVIAAIDGIAEIVPKKWSNVRSFHLKVLESIAL
Sbjct: 181 ALLYLRTGTCSVVKVAKTSMEVEEIVSNVIAAIDGIAEIVPKKWSNVRSFHLKVLESIAL 240

Query: 241 PIYQTVPELKLKIDAAVKGEEKGTEKEDEAGKSPTPVKVSNKKEKKSSMKKGRIHEVRYM 300
           PIYQTVPELKLKIDAAVKGEEKG EKEDEAGKSPTPVKVS+KKEKKSSMKKGRIHEVRYM
Sbjct: 241 PIYQTVPELKLKIDAAVKGEEKGAEKEDEAGKSPTPVKVSDKKEKKSSMKKGRIHEVRYM 300

Query: 301 DSNGGELSDEDDLNGDLDEDMDNAEVSENLKKGSDELKRKT 342
           DSNGGELSDEDDLNGDLDEDMDNAEVSENLKKGSDELKRKT
Sbjct: 301 DSNGGELSDEDDLNGDLDEDMDNAEVSENLKKGSDELKRKT 341

[Close]

BLAST of Carg16642 vs. NCBI nr
Match: XP_022970132.1 (ribosomal L1 domain-containing protein 1-like [Cucurbita maxima])

HSP 1 Score: 638.3 bits (1645), Expect = 2.0e-179
Identity = 336/341 (98.53%), Postives = 338/341 (99.12%), Query Frame = 0


Query: 1   MASSDSVALSSRVRRETAEKAVESLLQWRNSKREKPQLFDQEDFLYLVVALKKIPPKGRT 60
           MASSDSVALSSRVRRETAEKAVESLLQWRNSKREKPQLFD EDFLYLVVALKKIPPKGRT
Sbjct: 1   MASSDSVALSSRVRRETAEKAVESLLQWRNSKREKPQLFDLEDFLYLVVALKKIPPKGRT 60

Query: 61  NPYKIPLPHSFRSDSSEICLIIDDRSRSNLTKDEARKKIQSENIPISKVIKLSKLKSDYR 120
           NPYKIPLPHS RSDSSEICLIIDDRSRSNLTKD+ARKKIQSENIPISKVIKLSKLKSDYR
Sbjct: 61  NPYKIPLPHSLRSDSSEICLIIDDRSRSNLTKDDARKKIQSENIPISKVIKLSKLKSDYR 120

Query: 121 PFEAKRKLCDSYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIERSCSS 180
           PFEAKRKLCDSYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIERSCSS
Sbjct: 121 PFEAKRKLCDSYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIERSCSS 180

Query: 181 ALLYLRTGTCSVVKVAKTSMEVEEIVSNVIAAIDGIAEIVPKKWSNVRSFHLKVLESIAL 240
           ALLYLRTGTCSVVKVAKTSMEVEEIVSNVIAAIDGIAEIVPKKWSNVRSFHLKVLESIAL
Sbjct: 181 ALLYLRTGTCSVVKVAKTSMEVEEIVSNVIAAIDGIAEIVPKKWSNVRSFHLKVLESIAL 240

Query: 241 PIYQTVPELKLKIDAAVKGEEKGTEKEDEAGKSPTPVKVSNKKEKKSSMKKGRIHEVRYM 300
           PIYQTVPELKLKIDAAVKG+EKGTEKEDEAGKSPTPVKVSNKKEKKS MKKGRIHEVRYM
Sbjct: 241 PIYQTVPELKLKIDAAVKGDEKGTEKEDEAGKSPTPVKVSNKKEKKSRMKKGRIHEVRYM 300

Query: 301 DSNGGELSDEDDLNGDLDEDMDNAEVSENLKKGSDELKRKT 342
           DSNGGELSDEDDLNGDLDEDMDNAEVSENLKKGSDELKRKT
Sbjct: 301 DSNGGELSDEDDLNGDLDEDMDNAEVSENLKKGSDELKRKT 341

[Close]

BLAST of Carg16642 vs. NCBI nr
Match: XP_022159732.1 (ribosomal L1 domain-containing protein 1-like [Momordica charantia])

HSP 1 Score: 553.5 bits (1425), Expect = 6.5e-154
Identity = 292/344 (84.88%), Postives = 318/344 (92.44%), Query Frame = 0


Query: 1   MASSDSVAL--SSRVRRETAEKAVESLLQWRNSKREKPQLFDQEDFLYLVVALKKIPPKG 60
           MAS  SV +  SSRV ++TAEKAVESLLQWRNSKREKPQLFDQEDFLYLVV L+KIPPKG
Sbjct: 1   MASPGSVCVPPSSRVNQQTAEKAVESLLQWRNSKREKPQLFDQEDFLYLVVTLRKIPPKG 60

Query: 61  RTNPYKIPLPHSFRSDSSEICLIIDDRSRSNLTKDEARKKIQSENIPISKVIKLSKLKSD 120
           RTNPYKIPLPHS  S+SSE+CLIIDDR++SNLTKD+ARKKIQSENIPISKVIKLSKLKSD
Sbjct: 61  RTNPYKIPLPHSLHSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSD 120

Query: 121 YRPFEAKRKLCDSYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIERSC 180
           YRPFEAKRKLCDSYDMFFADDRVIPLLPSLLGKHF+KKKKIPVPLNLRHKNWKEQIE+SC
Sbjct: 121 YRPFEAKRKLCDSYDMFFADDRVIPLLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSC 180

Query: 181 SSALLYLRTGTCSVVKVAKTSMEVEEIVSNVIAAIDGIAEIVPKKWSNVRSFHLKVLESI 240
           +SALLYLRTGTCSVVKVAKTSMEVEEIVSNVIAAIDGIAEIVPKKWSNVRSFHLK+LESI
Sbjct: 181 ASALLYLRTGTCSVVKVAKTSMEVEEIVSNVIAAIDGIAEIVPKKWSNVRSFHLKLLESI 240

Query: 241 ALPIYQTVPELKLKIDAAVKGEEKGTEKEDEAGKSPTPVKVSNKKEKKS--SMKKGRIHE 300
           ALPIYQ+VP+LK KI+AA+KGE+KG E+ +++GKSPTPVKVSNKK      S KKGRIHE
Sbjct: 241 ALPIYQSVPDLKFKIEAAMKGEDKGIEEVEDSGKSPTPVKVSNKKXXXXXLSKKKGRIHE 300

Query: 301 VRYMDSNGGELSDEDDLNGDLDEDMDNAEVSENLKKGSDELKRK 341
           VRYMDSNGGELSDED+L  DLDED DN +VSE++  GSDELK K
Sbjct: 301 VRYMDSNGGELSDEDELGSDLDEDTDNVKVSEDVIMGSDELKGK 344

[Close]

BLAST of Carg16642 vs. NCBI nr
Match: XP_004143917.1 (PREDICTED: ribosomal L1 domain-containing protein 1-like [Cucumis sativus] >XP_011654759.1 PREDICTED: ribosomal L1 domain-containing protein 1-like [Cucumis sativus] >KGN50109.1 hypothetical protein Csa_5G154220 [Cucumis sativus])

HSP 1 Score: 541.2 bits (1393), Expect = 3.3e-150
Identity = 284/339 (83.78%), Postives = 309/339 (91.15%), Query Frame = 0


Query: 1   MASSDSVALSSRVRRETAEKAVESLLQWRNSKREKPQLFDQEDFLYLVVALKKIPPKGRT 60
           MA +D V  +++VRRETA KAVESLLQWRNSKREKPQLFDQEDFLYL+V LKKIPPKGRT
Sbjct: 1   MALAD-VTPTTKVRRETAAKAVESLLQWRNSKREKPQLFDQEDFLYLIVTLKKIPPKGRT 60

Query: 61  NPYKIPLPHSFRSDSSEICLIIDDRSRSNLTKDEARKKIQSENIPISKVIKLSKLKSDYR 120
           NPYKIPLPHS  SDSSE+CLIIDDR++SNLTKD+ARKKIQSENIPISKVIKLSKLKSDYR
Sbjct: 61  NPYKIPLPHSLHSDSSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYR 120

Query: 121 PFEAKRKLCDSYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIERSCSS 180
           PFEAKRKLCDSYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQ+ERSCSS
Sbjct: 121 PFEAKRKLCDSYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQVERSCSS 180

Query: 181 ALLYLRTGTCSVVKVAKTSMEVEEIVSNVIAAIDGIAEIVPKKWSNVRSFHLKVLESIAL 240
            LLYLRTGTCSVVKVA+TSMEVEEIV NVIAAIDGIAE+VPKKWSNVRSF LKVLESIAL
Sbjct: 181 GLLYLRTGTCSVVKVARTSMEVEEIVDNVIAAIDGIAEVVPKKWSNVRSFFLKVLESIAL 240

Query: 241 PIYQTVPELKLKIDAAVKGEEKGTEKEDEAGKSPTPVKVSNKKEKKSSMKKGRIHEVRYM 300
           PIYQTVPELK KI+A VKG+E    KE+EA KSPTPVKV +KKE+K S KKGRIHE+RYM
Sbjct: 241 PIYQTVPELKFKIEAGVKGKEDEITKEEEAAKSPTPVKVGSKKERKLSKKKGRIHEIRYM 300

Query: 301 DSNGGELSDEDDLNGDLDEDMDNAEVSENLKKGSDELKR 340
           D+NG ELS+ED+       D+D+ EV+ENLKKGSDELK+
Sbjct: 301 DTNGRELSNEDE-----GSDLDDVEVNENLKKGSDELKK 333

[Close]

BLAST of Carg16642 vs. TAIR10
Match: AT3G58660.1 (Ribosomal protein L1p/L10e family)

HSP 1 Score: 350.9 bits (899), Expect = 1.2e-96
Identity = 186/315 (59.05%), Postives = 237/315 (75.24%), Query Frame = 0


Query: 10  SSRVRRETAEKAVESLLQWRN--SKREKPQLFDQEDFLYLVVALKKIPPKGRTNPYKIPL 69
           +SRV  +T E A+  L+ WR+  SK EKPQL ++++ +YL V LKKIP K RTN Y+IPL
Sbjct: 21  TSRVSPKTVESALNGLINWRSDKSKTEKPQLLEEDELVYLFVTLKKIPQKTRTNAYRIPL 80

Query: 70  PHSFRS---DSSEICLIIDDRSRSNLTKDEARKKIQSENIPISKVIKLSKLKSDYRPFEA 129
           PH   +   DS EICLIIDDR +S LTKD+A KKI+SENIPI+KVIKLSKLKSDY+ FEA
Sbjct: 81  PHPLINPTVDSPEICLIIDDRPKSGLTKDDAMKKIKSENIPITKVIKLSKLKSDYKAFEA 140

Query: 130 KRKLCDSYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIERSCSSALLY 189
           KRKLCDSYDMFF D R+IPLLP ++GK F+  KKIPV L+L+H+NWK QIE++C SA+ +
Sbjct: 141 KRKLCDSYDMFFTDRRIIPLLPRVIGKKFFTSKKIPVALDLKHRNWKHQIEKACGSAMFF 200

Query: 190 LRTGTCSVVKVAKTSMEVEEIVSNVIAAIDGIAEIVPKKWSNVRSFHLKVLESIALPIYQ 249
           +RTGTCSV+KV K SM++ EI  NV+A ++G+ E +P KW+ VRS HLK+ ES+ALPIYQ
Sbjct: 201 IRTGTCSVIKVGKLSMDICEITENVMATLNGLVEFLPNKWTYVRSLHLKLSESLALPIYQ 260

Query: 250 TVPELKLKIDAAVKGEEKGTEKEDEAGKSPTPVKVSNKKEK---KSSMKKGRIHEVRYMD 309
           +VP+LKLKIDA   G  K   +E++ G+    V V   ++    K   KKGRIHEVRYMD
Sbjct: 261 SVPDLKLKIDAF--GSGKSVVQEEKEGEVEEVVAVDGGEKSVTGKGKKKKGRIHEVRYMD 320

Query: 310 SNGGELSDEDDLNGD 317
           SN  E+ DED++ GD
Sbjct: 321 SNVAEVLDEDEIGGD 333

[Close]

BLAST of Carg16642 vs. TAIR10
Match: AT2G42650.1 (Ribosomal protein L1p/L10e family)

HSP 1 Score: 327.8 bits (839), Expect = 1.0e-89
Identity = 176/335 (52.54%), Postives = 242/335 (72.24%), Query Frame = 0


Query: 11  SRVRRETAEKAVESLLQWRN--SKREKPQLFDQEDFLYLVVALKKIPPKGRTNPYKIPLP 70
           SRV  +T + AV++L++  N  S+ EKPQL +++ F YLVVALKKIP +  TN Y+IPLP
Sbjct: 2   SRVSPKTVDDAVKALVKEGNEKSRTEKPQLLEEDGFFYLVVALKKIPQRNFTNAYRIPLP 61

Query: 71  H---SFRSDSSEICLIIDDRSRSNLTKDEARKKIQSENIPISKVIKLSKLKSDYRPFEAK 130
           H   +   DS E+CLIIDDR  S LT+++A+K I+SENIPI+KV+KLSKLKSDY  FE+K
Sbjct: 62  HPLINTTEDSPELCLIIDDRPESGLTEEDAKKNIKSENIPITKVVKLSKLKSDYGSFESK 121

Query: 131 RKLCDSYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIERSCSSALLYL 190
           RKLCDSYDMFF+D RVIP+LP L+GK F++ KK PV ++L+H NWKEQIE++C +A+ ++
Sbjct: 122 RKLCDSYDMFFSDRRVIPMLPKLIGKKFFQSKKTPVAIDLKHMNWKEQIEKACGAAMFFM 181

Query: 191 RTGTCSVVKVAKTSMEVEEIVSNVIAAIDGIAEIVPKKWSNVRSFHLKVLESIALPIYQT 250
           RTG+CS +KVAK SME ++IV NV A ++G+ +++P +W  +RS HLK+ ES++LP+YQT
Sbjct: 182 RTGSCSAIKVAKLSMESDDIVENVTATLNGVVDVLPSRWKYIRSLHLKLSESLSLPLYQT 241

Query: 251 VPELKLKIDAAVKGEEKGTEKEDEAGKSPTPVKVSNKKEKKSSMKKGRIHEVRYMDSNGG 310
           VP L+LKID     E K  E     G + + V  S+ K  K+  K G+IHEVRYMDSN  
Sbjct: 242 VPYLQLKIDPLGVEEVKNGE-----GLAKSDVDDSSSKSVKTKKKNGKIHEVRYMDSNVS 301

Query: 311 ELSDEDDLNGDLDEDMDNAEVSENLKKGSDELKRK 341
           E   +D+ +  + ED    EV+++L    D+ KRK
Sbjct: 302 ETLGDDEFDRSVGED----EVADDLNASGDKKKRK 327

[Close]

BLAST of Carg16642 vs. TAIR10
Match: AT1G06380.1 (Ribosomal protein L1p/L10e family)

HSP 1 Score: 246.9 bits (629), Expect = 2.3e-65
Identity = 125/242 (51.65%), Postives = 175/242 (72.31%), Query Frame = 0


Query: 11  SRVRRETAEKAVESLLQW--RNSKREKPQLFDQEDFLYLVVALKKIPPKGRTNPYKIPLP 70
           S+V  +   +AV+SLL+W    SK E  +  + + F+YL+V LK+IP   RTNP  IPLP
Sbjct: 16  SKVDPQNVNRAVKSLLKWWDSKSKTENSESLENDGFVYLIVTLKRIPQLDRTNPLMIPLP 75

Query: 71  HSF----RSDSSEICLIIDDRSRSNLTKDEARKKIQSENIPISKVIKLSKLKSDYRPFEA 130
           H        D  E+CLIIDD+ ++ +TK+ A KKI++E IPI+ VIK+SKLKSD R  E 
Sbjct: 76  HPLIDLVAEDPPELCLIIDDKHKNKITKEAALKKIEAEKIPITTVIKVSKLKSDLRKLEE 135

Query: 131 KRKLCDSYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIERSCSSALLY 190
           +++    ++++FA+ R++P+LP LLGK F KK K P+ +NLRH +WKEQIE++C SAL +
Sbjct: 136 EKR----FELYFAERRLMPMLPKLLGKEFVKKNKTPIAINLRHGSWKEQIEKACESALFF 195

Query: 191 LRTGTCSVVKVAKTSMEVEEIVSNVIAAIDGIAEIVPKKWSNVRSFHLKVLESIALPIYQ 247
           + TGTCSVVKVAK SM   EI  NV+AA++GI ++VP +W NV+ FHLK+LES+ALP+YQ
Sbjct: 196 VGTGTCSVVKVAKLSMGRNEIAENVVAAMNGIGDLVPGRWKNVKLFHLKLLESLALPVYQ 253

[Close]

BLAST of Carg16642 vs. TAIR10
Match: AT5G22440.1 (Ribosomal protein L1p/L10e family)

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-10
Identity = 59/224 (26.34%), Postives = 106/224 (47.32%), Query Frame = 0


Query: 11  SRVRRETAEKAVESLLQWRNSKREKPQLFDQEDFLYLVVALKKI-PPKGRTNPYKIPLPH 70
           S+++ E   +A+ S++   + K  KP+ F +   + L + LK   P K +     + LPH
Sbjct: 2   SKLQSEAVREAISSII--THCKETKPRNFTET--IELQIGLKNYDPQKDKRFSGSVKLPH 61

Query: 71  SFRSDSSEICLIIDDRSRSNLTKDEARKKIQSENIPISKVIKLSKLKSDYRPFEAKRKLC 130
             R    +IC++ D +        E  +KI  E++ +  + KL+K K      +  +KL 
Sbjct: 62  VPR-PKMKICMLGDAQ------HVEEAEKIGLESMDVEALKKLNKNK------KLVKKLA 121

Query: 131 DSYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIERSCSSALLYLRTGT 190
             +  F A + VI  +P LLG    K  K P  L    ++ + ++  + ++    L+   
Sbjct: 122 KKFHAFLASESVIKQIPRLLGPGLNKAGKFPT-LVSHQESLESKVNETKATVKFQLKKVL 181

Query: 191 CSVVKVAKTSMEVEEIVSNVIAAIDGIAEIVPKKWSNVRSFHLK 234
           C  V V   SME ++I  NV  +++ +  ++ K W NVR  +LK
Sbjct: 182 CMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLK 207

[Close]

BLAST of Carg16642 vs. TAIR10
Match: AT1G08360.1 (Ribosomal protein L1p/L10e family)

HSP 1 Score: 60.5 bits (145), Expect = 3.1e-09
Identity = 56/224 (25.00%), Postives = 103/224 (45.98%), Query Frame = 0


Query: 11  SRVRRETAEKAVESLLQWRNSKREKPQLFDQEDFLYLVVALKKI-PPKGRTNPYKIPLPH 70
           S+++ E   +A+ ++     +K+      +  + + L + LK   P K +     + LPH
Sbjct: 2   SKLQSEAVREAITTITGKSEAKKR-----NFVETIELQIGLKNYDPQKDKRFSGSVKLPH 61

Query: 71  SFRSDSSEICLIIDDRSRSNLTKDEARKKIQSENIPISKVIKLSKLKSDYRPFEAKRKLC 130
             R    +IC++ D +        E  +K+  EN+ +  + KL+K K      +  +KL 
Sbjct: 62  IPR-PKMKICMLGDAQ------HVEEAEKMGLENMDVESLKKLNKNK------KLVKKLA 121

Query: 131 DSYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIERSCSSALLYLRTGT 190
             Y  F A + VI  +P LLG    K  K P  L    ++ + ++  + ++    L+   
Sbjct: 122 KKYHAFLASESVIKQIPRLLGPGLNKAGKFPT-LVSHQESLESKVNETKATVKFQLKKVL 181

Query: 191 CSVVKVAKTSMEVEEIVSNVIAAIDGIAEIVPKKWSNVRSFHLK 234
           C  V V   SME ++I  NV  +++ +  ++ K W NVR  +LK
Sbjct: 182 CMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLK 206

[Close]

BLAST of Carg16642 vs. Swiss-Prot
Match: sp|O76021|RL1D1_HUMAN (Ribosomal L1 domain-containing protein 1 OS=Homo sapiens OX=9606 GN=RSL1D1 PE=1 SV=3)

HSP 1 Score: 157.9 bits (398), Expect = 2.6e-37
Identity = 88/236 (37.29%), Postives = 141/236 (59.75%), Query Frame = 0


Query: 15  RETAEKAVESLL-QWRNSKREKPQLFDQEDFLYLVVALKKIPPKGRTNPYKIPLPHSFRS 74
           +E   KAV++LL   ++ K     L ++ + L+L+V L KIP K      ++ LPHS RS
Sbjct: 33  KEQVRKAVDALLTHCKSRKNNYGLLLNENESLFLMVVLWKIPSKELR--VRLTLPHSIRS 92

Query: 75  DSSEICLIIDDRSRSNLTKDEA--RKKIQSENI-PISKVIKLSKLKSDYRPFEAKRKLCD 134
           DS +ICL   D   S   K E   RK +    I  +S++I L  LK +Y+ +EAK +L  
Sbjct: 93  DSEDICLFTKDEPNSTPEKTEQFYRKLLNKHGIKTVSQIISLQTLKKEYKSYEAKLRLLS 152

Query: 135 SYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIERSCSSALLYL-RTGT 194
           S+D F  D R+  LLPSL+G+HFY++KK+PV +NL  KN   +I       +L + ++G+
Sbjct: 153 SFDFFLTDARIRRLLPSLIGRHFYQRKKVPVSVNLLSKNLSREINDCIGGTVLNISKSGS 212

Query: 195 CSVVKVAKTSMEVEEIVSNVIAAIDGIAEIVPKKWSNVRSFHLKVLESIALPIYQT 246
           CS +++    M++E I+ N++A   G++E +P+KW +V+   +K  +S ALPI+ +
Sbjct: 213 CSAIRIGHVGMQIEHIIENIVAVTKGLSEKLPEKWESVKLLFVKTEKSAALPIFSS 266

[Close]

BLAST of Carg16642 vs. Swiss-Prot
Match: sp|Q5RCE6|RL1D1_PONAB (Ribosomal L1 domain-containing protein 1 OS=Pongo abelii OX=9601 GN=RSL1D1 PE=2 SV=2)

HSP 1 Score: 157.9 bits (398), Expect = 2.6e-37
Identity = 88/236 (37.29%), Postives = 141/236 (59.75%), Query Frame = 0


Query: 15  RETAEKAVESLL-QWRNSKREKPQLFDQEDFLYLVVALKKIPPKGRTNPYKIPLPHSFRS 74
           +E   KAV++LL   ++ K     L ++ + L+L+V L KIP K      ++ LPHS RS
Sbjct: 33  KEQVRKAVDALLTHCKSRKNNYGLLLNENESLFLMVVLWKIPSKELR--VRLTLPHSIRS 92

Query: 75  DSSEICLIIDDRSRSNLTKDEA--RKKIQSENI-PISKVIKLSKLKSDYRPFEAKRKLCD 134
           DS +ICL   D   S   K E   RK +    I  +S++I L  LK +Y+ +EAK +L  
Sbjct: 93  DSEDICLFTKDEPNSTPEKTEQFYRKLLNKHGIKTVSQIISLQTLKKEYKSYEAKLRLLS 152

Query: 135 SYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIERSCSSALLYL-RTGT 194
           S+D F  D R+  LLPSL+G+HFY++KK+PV +NL  KN   +I       +L + ++G+
Sbjct: 153 SFDFFLTDARIRRLLPSLIGRHFYQRKKVPVSVNLLSKNLSREINDCIGGTVLNISKSGS 212

Query: 195 CSVVKVAKTSMEVEEIVSNVIAAIDGIAEIVPKKWSNVRSFHLKVLESIALPIYQT 246
           CS +++    M++E I+ N++A   G++E +P+KW +V+   +K  +S ALPI+ +
Sbjct: 213 CSAIRIGHVGMQIEHIIENIVAVTKGLSEKLPEKWESVKLLFVKTEKSAALPIFSS 266

[Close]

BLAST of Carg16642 vs. Swiss-Prot
Match: sp|Q8BVY0|RL1D1_MOUSE (Ribosomal L1 domain-containing protein 1 OS=Mus musculus OX=10090 GN=Rsl1d1 PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.1e-34
Identity = 86/235 (36.60%), Postives = 141/235 (60.00%), Query Frame = 0


Query: 15  RETAEKAVESLLQWRNSKREKPQ-LFDQEDFLYLVVALKKIPPKGRTNPYKIPLPHSFRS 74
           RE   KAVE +     SK+   + L    + L+L+V L KIP K      K+PLPHS  S
Sbjct: 33  REQIRKAVEVISNRSKSKKNNNELLLSGSENLFLMVILWKIPEKELR--VKVPLPHSILS 92

Query: 75  DSSEICLIIDDRSRSNLTKDEARKKIQSEN--IPISKVIKLSKLKSDYRPFEAKRKLCDS 134
           +SS++CL   D   S    +   KK+  ++    IS++I    LK++Y+ +EAK +L  S
Sbjct: 93  ESSDVCLFTKDEFDSPEQTEGFYKKLLKKHGVNTISQIIPFKTLKTEYKAYEAKLRLLGS 152

Query: 135 YDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIERSCSSALLYL-RTGTC 194
           +++F  D R+   LPS +G+HFY++KK+PV +NL  KN  ++I R  +  +L + + G+C
Sbjct: 153 FEVFITDARIRRHLPSHIGRHFYQRKKVPVSVNLLAKNLSKEINRCITGTVLNISKRGSC 212

Query: 195 SVVKVAKTSMEVEEIVSNVIAAIDGIAEIVPKKWSNVRSFHLKVLESIALPIYQT 246
           S +++  T ME E IV N++A  + ++E +P+KW +V+   LK  +S++LPI+ +
Sbjct: 213 STIRIGHTGMETEHIVDNILAVSEMLSEKLPEKWQSVKLLFLKTEKSVSLPIFSS 265

[Close]

BLAST of Carg16642 vs. Swiss-Prot
Match: sp|A4FV97|RL1D1_BOVIN (Ribosomal L1 domain-containing protein 1 OS=Bos taurus OX=9913 GN=RSL1D1 PE=2 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.5e-32
Identity = 86/258 (33.33%), Postives = 143/258 (55.43%), Query Frame = 0


Query: 16  ETAEKAVESLL-QWRNSKREKPQLFDQEDFLYLVVALKKIPPKGRTNPYKIPLPHSFRSD 75
           E  +KAVE+LL   R+ K     L ++ +  +L+V L KIP K      ++ LPH  RSD
Sbjct: 32  EQVKKAVEALLAHSRSRKNANGLLLNENENFFLMVVLWKIPSKELR--VRLSLPHGIRSD 91

Query: 76  SSEICLIIDDRSR--SNLTKDEARKKIQSENI-PISKVIKLSKLKSDYRPFEAKRKLCDS 135
            +++CL   D     S  T+   +K + +  I  IS++I    LK +Y+ +EAK +L  S
Sbjct: 92  LADVCLFTKDEPNLSSEQTERYYKKLLNNHGIKTISQIIPFRTLKKEYKAYEAKLRLLGS 151

Query: 136 YDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIERSCSSALLYL-RTGTC 195
           +D F  D R+  LLPS LG+HFY +KK+PV +NL+ K    +I       +L + ++G+C
Sbjct: 152 FDFFITDARIRRLLPSHLGRHFYNRKKVPVSVNLQSKTLSREINDCIGGTVLNISKSGSC 211

Query: 196 SVVKVAKTSMEVEEIVSNVIAAIDGIAEIVPKKWSNVRSFHLKVLESIALPIYQTVPELK 255
           S +++  T M ++ IV NV+A    +++ +P+KW +V+   +K   S++LP++ +     
Sbjct: 212 STIRIGHTGMPIQHIVENVVAVAKSLSQKLPEKWESVKLLFVKTERSVSLPVFSSF---- 271

Query: 256 LKIDAAVKGEEKGTEKED 269
                + +GE KG    D
Sbjct: 272 ----VSSQGEAKGLRTRD 279

[Close]

BLAST of Carg16642 vs. Swiss-Prot
Match: sp|Q9UT32|RL1DB_SCHPO (Putative ribosome biogenesis protein C8F11.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC8F11.04 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 5.1e-25
Identity = 92/263 (34.98%), Postives = 146/263 (55.51%), Query Frame = 0


Query: 10  SSRVRRETAEKAVESLLQWRNSKREKPQLFDQE----DFLYLVVA-LKKIPPKGRTNPYK 69
           S+ +  E+  K+ E++    +S+ +K  L + E    + ++L +A LK I    +  PYK
Sbjct: 18  SALLEYESKRKSSENI----DSESKKTNLLEDEQDDIEPVWLQLATLKFIGNNRKLIPYK 77

Query: 70  IPLPHSFRSDSSEICLIIDDRSR--SNLTKDEARKKIQSENIPISKVIKLSKLKSDYRPF 129
           I + +     SSE CLI+ D  R   +L  +    K+      +++VI LSKLK+ +  +
Sbjct: 78  IAIKNPVIPSSSEACLIVKDPQRVYKDLVNEAGLSKV------VTRVIGLSKLKAKWNSY 137

Query: 130 EAKRKLCDSYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIERSCSSA- 189
           E KR+L D +D+F ADDRVIP+LP +LGK FY+K K+PVP+ +  K   EQ++R   SA 
Sbjct: 138 EQKRQLRDQFDIFLADDRVIPMLPRILGKTFYQKSKVPVPVKI-SKGTAEQLKREVVSAY 197

Query: 190 -LLYLRTGTCS--VVK---VAKTSMEVEEIVSNVIAAIDGIAEIVPKKWSNVRSFHLKVL 249
              Y  +  CS  ++K   V+ TS E+ E V +++  +     IVP     + S HLK  
Sbjct: 198 GATYFNSAPCSSFMIKCGHVSNTSTELAENVESILQFVS--KHIVPDGAKGIASIHLKTS 257

Query: 250 ESIALPIYQTVPELKLKIDAAVK 259
           +SIA+P++   P LK  I ++ K
Sbjct: 258 QSIAIPLWNN-PNLKELIASSRK 266

[Close]

BLAST of Carg16642 vs. TrEMBL
Match: tr|A0A0A0KML2|A0A0A0KML2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154220 PE=4 SV=1)

HSP 1 Score: 541.2 bits (1393), Expect = 2.2e-150
Identity = 284/339 (83.78%), Postives = 309/339 (91.15%), Query Frame = 0


Query: 1   MASSDSVALSSRVRRETAEKAVESLLQWRNSKREKPQLFDQEDFLYLVVALKKIPPKGRT 60
           MA +D V  +++VRRETA KAVESLLQWRNSKREKPQLFDQEDFLYL+V LKKIPPKGRT
Sbjct: 1   MALAD-VTPTTKVRRETAAKAVESLLQWRNSKREKPQLFDQEDFLYLIVTLKKIPPKGRT 60

Query: 61  NPYKIPLPHSFRSDSSEICLIIDDRSRSNLTKDEARKKIQSENIPISKVIKLSKLKSDYR 120
           NPYKIPLPHS  SDSSE+CLIIDDR++SNLTKD+ARKKIQSENIPISKVIKLSKLKSDYR
Sbjct: 61  NPYKIPLPHSLHSDSSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYR 120

Query: 121 PFEAKRKLCDSYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIERSCSS 180
           PFEAKRKLCDSYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQ+ERSCSS
Sbjct: 121 PFEAKRKLCDSYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQVERSCSS 180

Query: 181 ALLYLRTGTCSVVKVAKTSMEVEEIVSNVIAAIDGIAEIVPKKWSNVRSFHLKVLESIAL 240
            LLYLRTGTCSVVKVA+TSMEVEEIV NVIAAIDGIAE+VPKKWSNVRSF LKVLESIAL
Sbjct: 181 GLLYLRTGTCSVVKVARTSMEVEEIVDNVIAAIDGIAEVVPKKWSNVRSFFLKVLESIAL 240

Query: 241 PIYQTVPELKLKIDAAVKGEEKGTEKEDEAGKSPTPVKVSNKKEKKSSMKKGRIHEVRYM 300
           PIYQTVPELK KI+A VKG+E    KE+EA KSPTPVKV +KKE+K S KKGRIHE+RYM
Sbjct: 241 PIYQTVPELKFKIEAGVKGKEDEITKEEEAAKSPTPVKVGSKKERKLSKKKGRIHEIRYM 300

Query: 301 DSNGGELSDEDDLNGDLDEDMDNAEVSENLKKGSDELKR 340
           D+NG ELS+ED+       D+D+ EV+ENLKKGSDELK+
Sbjct: 301 DTNGRELSNEDE-----GSDLDDVEVNENLKKGSDELKK 333

[Close]

BLAST of Carg16642 vs. TrEMBL
Match: tr|A0A1S3ATP9|A0A1S3ATP9_CUCME (ribosomal L1 domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103482736 PE=4 SV=1)

HSP 1 Score: 483.8 bits (1244), Expect = 4.2e-133
Identity = 263/340 (77.35%), Postives = 284/340 (83.53%), Query Frame = 0


Query: 11  SRVRRETAEKAVESLLQWRNSKREKPQLFDQEDFLYLVVALKKIPPKGRTNPYKIPLPHS 70
           ++V RETAEKAVESLLQWR+SKREKPQLFDQEDFLYLVV LKKIPPKGRTNPYKIPLPHS
Sbjct: 10  TKVGRETAEKAVESLLQWRSSKREKPQLFDQEDFLYLVVTLKKIPPKGRTNPYKIPLPHS 69

Query: 71  FRSDSSEICLIIDDRSRSNLTKDEARKKIQSENIPISKVIKLSKLKSDYRPFEAKRKLCD 130
             SDSSE+CLIIDDR++SNLTKD+ARKKIQSENIPISKVIKLSKLKSDYRPFEAKRKLCD
Sbjct: 70  LHSDSSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYRPFEAKRKLCD 129

Query: 131 SYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIERSCSSALLYLRTGTC 190
           SYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIE++CSS LLYLRTGTC
Sbjct: 130 SYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIEKTCSSGLLYLRTGTC 189

Query: 191 SVVKVAKTSMEVEEIVSNVIAAIDGIAEIVPKKWSNVRSFHLKVLESIALPIYQTVPELK 250
           SVVKVAKTSM VEEIV NVIAAIDGIAE+VPKKWSNVRSFHLKVLESIALPIYQTVPELK
Sbjct: 190 SVVKVAKTSMAVEEIVDNVIAAIDGIAEVVPKKWSNVRSFHLKVLESIALPIYQTVPELK 249

Query: 251 LKIDAAVKGEEKGTEKEDEAGKS-----------PTPVKVSNKKEKKSSMKKGRIHEVRY 310
            KI+A VK ++    +E                 P  VKV+NKKEKK S KKGRIHE+ Y
Sbjct: 250 FKIEAGVKRKQDEITEEXXXXXXXXXXXXXXXXIPASVKVTNKKEKKLSKKKGRIHEISY 309

Query: 311 MDSNGGELSDEDDLNGDLDEDMDNAEVSENLKKGSDELKR 340
           MD+           NG+L  DM   EV + L  GSDE+K+
Sbjct: 310 MDT-----------NGELSNDM-GVEVKKGL-LGSDEMKK 336

[Close]

BLAST of Carg16642 vs. TrEMBL
Match: tr|A0A1Q3BAY7|A0A1Q3BAY7_CEPFO (Ribosomal_L1 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_08685 PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 5.5e-109
Identity = 214/335 (63.88%), Postives = 265/335 (79.10%), Query Frame = 0


Query: 8   ALSSRVRRETAEKAVESLLQWRNSKRE--KPQLFDQEDFLYLVVALKKIPPKGRTNPYKI 67
           A+SSRV R+T E+A+ +LL+WRNSK +  KP L ++++F+YL++ LKKIPPK RTNP+K+
Sbjct: 10  AVSSRVTRDTLERAINALLKWRNSKTKTIKPLLLEEDEFIYLILTLKKIPPKSRTNPFKV 69

Query: 68  PLPHSF---RSDSSEICLIIDDRSRSNLTKDEARKKIQSENIPISKVIKLSKLKSDYRPF 127
            LPH      +D SE+CLIIDDRS+S+LTK++A+KKI+SENIPISKVIK+SKLK+DYRPF
Sbjct: 70  NLPHPLINPETDHSELCLIIDDRSKSHLTKEDAQKKIKSENIPISKVIKISKLKTDYRPF 129

Query: 128 EAKRKLCDSYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIERSCSSAL 187
           EAKRKLC SYDMFFAD RVIPLLP LLGK F+KKKKIPVP++L+HKNWKEQIE++C SAL
Sbjct: 130 EAKRKLCGSYDMFFADKRVIPLLPKLLGKQFFKKKKIPVPVDLKHKNWKEQIEKACGSAL 189

Query: 188 LYLRTGTCSVVKVAKTSMEVEEIVSNVIAAIDGIAEIVPKKWSNVRSFHLKVLESIALPI 247
           LYLRTGTCSV+KV K SM   EIV NV+AAIDGI EIVP+KW NVRSFHLK+ ES+ALP+
Sbjct: 190 LYLRTGTCSVIKVGKVSMSKNEIVENVVAAIDGIGEIVPRKWGNVRSFHLKMFESLALPV 249

Query: 248 YQTVPELKLKIDAAVKGEEKGTEKEDEAGKSPTPVKVSNKKEKKSSMKKGRIHEVRYMDS 307
           YQ VP+LKLKI+     +E+  E E E+       +V   K+ K   KKGRIHEVRYMDS
Sbjct: 250 YQAVPDLKLKIETGQDDKERKKEGEKESEVDINDGRVERDKKMK---KKGRIHEVRYMDS 309

Query: 308 NGGELSDEDDLNGDLDEDMDNAEVSENLKKGSDEL 338
           N GEL DED+L GD + ++      EN + GS E+
Sbjct: 310 NIGELFDEDELGGDSEGEIGLVGNIENDEMGSAEV 341

[Close]

BLAST of Carg16642 vs. TrEMBL
Match: tr|A0A2P5DB66|A0A2P5DB66_PARAD (Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_079060 PE=4 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 9.0e-104
Identity = 198/297 (66.67%), Postives = 245/297 (82.49%), Query Frame = 0


Query: 12  RVRRETAEKAVESLLQWRNSKR--EKPQLFDQEDFLYLVVALKKIPPKGRTNPYKIPLPH 71
           RV  +T EKAV++LL+WRNSK   +KPQL D+++F+YLV+ LKKIPP+ R N +K+PLPH
Sbjct: 11  RVSPKTVEKAVKALLKWRNSKSQIQKPQLLDEDEFVYLVLTLKKIPPRDRINAHKVPLPH 70

Query: 72  SFRSDSSEICLIIDDRSRSNLTKDEARKKIQSENIPISKVIKLSKLKSDYRPFEAKRKLC 131
           S  S+SSE+CLIIDDRS+SNLTKD+A KKI SE IP+SKV++LSKLKSDY+PFE+KRKLC
Sbjct: 71  SLLSESSELCLIIDDRSKSNLTKDDAAKKISSEGIPVSKVLRLSKLKSDYQPFESKRKLC 130

Query: 132 DSYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIERSCSSALLYLRTGT 191
           DSYD+F AD RV+PLLP LLGK F+KKKKIPVP++LRHKNWKEQIER+C SALL+LRTGT
Sbjct: 131 DSYDVFLADKRVVPLLPRLLGKQFFKKKKIPVPVDLRHKNWKEQIERACGSALLFLRTGT 190

Query: 192 CSVVKVAKTSMEVEEIVSNVIAAIDGIAEIVPKKWSNVRSFHLKVLESIALPIYQTVPEL 251
           CSVV+VAK SM  E IV NV+AA++GI EIVP+KW NVRSFH+K+LES+ALPIYQ +P+ 
Sbjct: 191 CSVVRVAKASMGSEAIVENVVAAVNGIVEIVPRKWGNVRSFHVKLLESLALPIYQALPDT 250

Query: 252 KLKIDAAVKGEEKGTEKEDEAGKSPTPVKVSNKKEKKSSMKKGRIHEVRYMDSNGGE 307
           +LKI+  VK + +  E+E+E GK    V    K  +K   KKGRIHEVRYMD + GE
Sbjct: 251 RLKIE-GVKAKLEAKEEEEEGGKG---VGKDEKAGEKMKKKKGRIHEVRYMDVSAGE 303

[Close]

BLAST of Carg16642 vs. TrEMBL
Match: tr|W9RT08|W9RT08_9ROSA (Ribosomal L1 domain-containing protein 1 OS=Morus notabilis OX=981085 GN=L484_021401 PE=4 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 3.8e-102
Identity = 202/315 (64.13%), Postives = 248/315 (78.73%), Query Frame = 0


Query: 6   SVALSSRVRRETAEKAVESLLQWRNSK--REKPQLFDQEDFLYLVVALKKIPPKGRTNPY 65
           S   ++R+  +T ++AV SLL+WRNSK   + PQL D ++F+YL++ LKKIP K R N +
Sbjct: 13  STDANARMSPKTVQRAVNSLLKWRNSKSQTQNPQLLDDDEFVYLILTLKKIPSKDRINAH 72

Query: 66  KIPLPHSFRS-DSSEICLIIDDRSRSNLTKDEARKKIQSENIPISKVIKLSKLKSDYRPF 125
           KIPLPH   + +SSE+CL IDDR +S LTKD+A KKI+SE IP+SKV+KLSKLKSDYRPF
Sbjct: 73  KIPLPHPLHAGESSELCLFIDDRPKSGLTKDDAMKKIKSEGIPVSKVLKLSKLKSDYRPF 132

Query: 126 EAKRKLCDSYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIERSCSSAL 185
           EAKRKLCDSYDMFFAD RV+PLLP LLGKHF+KK+KIPVP++L+H+NWKEQIE++C SAL
Sbjct: 133 EAKRKLCDSYDMFFADKRVVPLLPRLLGKHFFKKRKIPVPVDLKHQNWKEQIEKACGSAL 192

Query: 186 LYLRTGTCSVVKVAKTSMEVEEIVSNVIAAIDGIAEIVPKKWSNVRSFHLKVLESIALPI 245
           L+LRTGTCSVV+VAK SM   EI  N +AAI+GIAEIVP+KW NVRSFHLK+LES+ALP+
Sbjct: 193 LFLRTGTCSVVRVAKASMGAAEIAENAMAAINGIAEIVPRKWGNVRSFHLKLLESVALPV 252

Query: 246 YQTVPELKLKIDAAVKGEEKGTEKEDEAGKSPTPVKVSNKKEKKSSMKKGRIHEVRYMDS 305
           YQ +P++KLKI+   + EEK TEK    G+    V    K  KK   KKGRIHEVRYMD 
Sbjct: 253 YQALPDIKLKIEGIKEDEEKKTEK----GEGDKRVGEDEKAGKKK--KKGRIHEVRYMDV 312

Query: 306 NGG-ELSDEDDLNGD 317
           N G  L DED+L GD
Sbjct: 313 NHGVALDDEDELGGD 321

The following BLAST results are available for this feature:

BLAST of Carg16642 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022928870.1	3.3e-182	100.00	ribosomal L1 domain-containing protein 1-like [Cucurbita moschata]	[more]
XP_023549753.1	5.3e-180	98.83	ribosomal L1 domain-containing protein 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022970132.1	2.0e-179	98.53	ribosomal L1 domain-containing protein 1-like [Cucurbita maxima]	[more]
XP_022159732.1	6.5e-154	84.88	ribosomal L1 domain-containing protein 1-like [Momordica charantia]	[more]
XP_004143917.1	3.3e-150	83.78	PREDICTED: ribosomal L1 domain-containing protein 1-like [Cucumis sativus] >XP_0...	[more]

BLAST of Carg16642 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G58660.1	1.2e-96	59.05	Ribosomal protein L1p/L10e family	[more]
AT2G42650.1	1.0e-89	52.54	Ribosomal protein L1p/L10e family	[more]
AT1G06380.1	2.3e-65	51.65	Ribosomal protein L1p/L10e family	[more]
AT5G22440.1	2.2e-10	26.34	Ribosomal protein L1p/L10e family	[more]
AT1G08360.1	3.1e-09	25.00	Ribosomal protein L1p/L10e family	[more]

BLAST of Carg16642 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O76021\|RL1D1_HUMAN	2.6e-37	37.29	Ribosomal L1 domain-containing protein 1 OS=Homo sapiens OX=9606 GN=RSL1D1 PE=1 ...	[more]
sp\|Q5RCE6\|RL1D1_PONAB	2.6e-37	37.29	Ribosomal L1 domain-containing protein 1 OS=Pongo abelii OX=9601 GN=RSL1D1 PE=2 ...	[more]
sp\|Q8BVY0\|RL1D1_MOUSE	2.1e-34	36.60	Ribosomal L1 domain-containing protein 1 OS=Mus musculus OX=10090 GN=Rsl1d1 PE=1...	[more]
sp\|A4FV97\|RL1D1_BOVIN	2.5e-32	33.33	Ribosomal L1 domain-containing protein 1 OS=Bos taurus OX=9913 GN=RSL1D1 PE=2 SV...	[more]
sp\|Q9UT32\|RL1DB_SCHPO	5.1e-25	34.98	Putative ribosome biogenesis protein C8F11.04 OS=Schizosaccharomyces pombe (stra...	[more]

BLAST of Carg16642 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KML2\|A0A0A0KML2_CUCSA	2.2e-150	83.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154220 PE=4 SV=1	[more]
tr\|A0A1S3ATP9\|A0A1S3ATP9_CUCME	4.2e-133	77.35	ribosomal L1 domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
tr\|A0A1Q3BAY7\|A0A1Q3BAY7_CEPFO	5.5e-109	63.88	Ribosomal_L1 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFO...	[more]
tr\|A0A2P5DB66\|A0A2P5DB66_PARAD	9.0e-104	66.67	Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_079060 PE=4 SV=...	[more]
tr\|W9RT08\|W9RT08_9ROSA	3.8e-102	64.13	Ribosomal L1 domain-containing protein 1 OS=Morus notabilis OX=981085 GN=L484_02...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR023674	Ribosomal_L1-like
IPR016095	Ribosomal_L1_3-a/b-sand
IPR028364	Ribosomal_L1/biogenesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16642-RA	Carg16642-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	PFAM	PF00687	Ribosomal_L1	coord: 35..237 e-value: 2.1E-62 score: 210.4
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	CDD	cd00403	Ribosomal_L1	coord: 18..242 e-value: 6.80717E-46 score: 158.501
IPR016095	Ribosomal protein L1, 3-layer alpha/beta-sandwich	GENE3D	G3DSA:3.40.50.790		coord: 88..180 e-value: 7.4E-23 score: 82.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 306..323
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 259..283
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 324..440
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 259..446
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 290..305
None	No IPR available	PANTHER	PTHR23105:SF31	RIBOSOMAL L1 DOMAIN-CONTAINING PROTEIN 1	coord: 12..287
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 12..287
IPR023674	Ribosomal protein L1-like	SUPERFAMILY	SSF56808	Ribosomal protein L1	coord: 15..243

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16642	Cla011459	Watermelon (97103) v1	carwmB0938
Carg16642	Csa5G154220	Cucumber (Chinese Long) v2	carcuB0954
Carg16642	MELO3C005664	Melon (DHL92) v3.5.1	carmeB0920
Carg16642	ClCG01G002830	Watermelon (Charleston Gray)	carwcgB0912
Carg16642	CSPI05G05540	Wild cucumber (PI 183967)	carcpiB0977
Carg16642	Cucsa.303030	Cucumber (Gy14) v1	carcgyB1054
Carg16642	CmaCh02G014630	Cucurbita maxima (Rimu)	carcmaB1283
Carg16642	CmoCh15G012850	Cucurbita moschata (Rifu)	carcmoB1252
Carg16642	CmoCh02G014980	Cucurbita moschata (Rifu)	carcmoB1254
Carg16642	Lsi09G002710	Bottle gourd (USVL1VR-Ls)	carlsiB851
Carg16642	Cp4.1LG05g03380	Cucurbita pepo (Zucchini)	carcpeB1298
Carg16642	Cp4.1LG13g01600	Cucurbita pepo (Zucchini)	carcpeB1295
Carg16642	CsGy5G002780	Cucumber (Gy14) v2	carcgybB0927
Carg16642	MELO3C005664.2	Melon (DHL92) v3.6.1	carmedB0927
Carg16642	CsaV3_5G002920	Cucumber (Chinese Long) v3	carcucB0979
Carg16642	Cla97C01G002910	Watermelon (97103) v2	carwmbB0980
Carg16642	Bhi12G000234	Wax gourd	carwgoB1081

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg16642	Carg02520	Silver-seed gourd	carcarB643

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16642	Cucurbita maxima (Rimu)	carcmaB1285
Carg16642	Silver-seed gourd	carcarB636
Carg16642	Cucurbita maxima (Rimu)	carcmaB1281
Carg16642	Cucurbita pepo (Zucchini)	carcpeB1299
Carg16642	Cucumber (Chinese Long) v3	carcucB0976