Cp4.1LG05g03380 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG05g03380
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Ribosomal protein L1
Location	Cp4.1LG05 : 1818122 .. 1819261 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCGCCGGATTCTGATACTCTCTCTTCCAGAGTTCGTCGGGAAACGGCGGAGAAAGCCGTCGAATCCCTCCTTCAATGGCGAAGTTCCAAACGAGAGAAGCCTCAACTTCTGGACCAGGAGGATTTTTTATACCTCGTCGTTACTCTCAAGAAAATCCCTCCAAAAGGTCGTACAAACCCTTACAAAATCCCTCTTCCCCATCCTCTTCGTTCTGAATCGTCTGAACTCTGCCTCATAATCGACGATAGAACCAAGTCCAATCTTACCAAAGACGACGCCAGGAAGAAAATCCAGTCGGAAAACATCCCGATTTCGAAGGTCATCAAGCTGTCGAAGCTTAAATCCGATTACCGCCCCTTTGAAGCGAAACGGAAGCTCTGCGATTCGTACGATATGTTTTTCGCCGATGATCGGGTTATTCCAATGCTGCCGAGTCTGTTGGGGAAGCACTTTTTCAAGAAGAAAAAAATTCCAGTGCCGTTGAATTTGAGGCATAAGAATTGGAAAGAACAGATCGAGAAGAGCTGTTCGTCGGGTTTGTTGTATTTGAGGAGAGGGACTTGTAGTGTGGTGAAAGTGGCAAAGACGTCAATGGAAGTTGAAGAGATCGTGAATAATGTGATTGCGGCCATTGATGGGATTGCAGAGATTGTGCCTAAGAAATGGAGCAATGTGCAATCATTTCATTTGAAGGTCCTGGAATCTATTGCATTGCCACTTTACCAAACAGTGCCGGAGTTGAAAATGAAGATTGAGGCGGCCGTGAGGGGTAAAGAAGAGGAAACAAACAAAGAAATAGCAGATGCAGGTAAGAGTCCTACTCCTGTAAAGGTCAATAACAAAAAGGAGAAGAAGTTGGGCAAGAAGAAGGGGAGGATACATGAAGTTCGTTATATGGACAGTAATGGCTTAAAGCTATCTGAAGAAGAAGATGAACAGGACAGTGATGTTGATGAGGTTAGTGAGAATATCGAAAAGGGTAAGAAATGGAGTAGAGTAAAGAAAACGAAGGAAGAGCTTCAAAGTGAGTTGAATGTCGAGAAAACATCGAAGAAGAAGAAGAAGAAGAATGGAGATGAAGAATCCAGTGGGAAGAAGGTGAAAAAGACAAAGAAGTTGAAAGAAGTGAAATGA

mRNA sequence

ATGGCTTCGCCGGATTCTGATACTCTCTCTTCCAGAGTTCGTCGGGAAACGGCGGAGAAAGCCGTCGAATCCCTCCTTCAATGGCGAAGTTCCAAACGAGAGAAGCCTCAACTTCTGGACCAGGAGGATTTTTTATACCTCGTCGTTACTCTCAAGAAAATCCCTCCAAAAGGTCGTACAAACCCTTACAAAATCCCTCTTCCCCATCCTCTTCGTTCTGAATCGTCTGAACTCTGCCTCATAATCGACGATAGAACCAAGTCCAATCTTACCAAAGACGACGCCAGGAAGAAAATCCAGTCGGAAAACATCCCGATTTCGAAGGTCATCAAGCTGTCGAAGCTTAAATCCGATTACCGCCCCTTTGAAGCGAAACGGAAGCTCTGCGATTCGTACGATATGTTTTTCGCCGATGATCGGGTTATTCCAATGCTGCCGAGTCTGTTGGGGAAGCACTTTTTCAAGAAGAAAAAAATTCCAGTGCCGTTGAATTTGAGGCATAAGAATTGGAAAGAACAGATCGAGAAGAGCTGTTCGTCGGGTTTGTTGTATTTGAGGAGAGGGACTTGTAGTGTGGTGAAAGTGGCAAAGACGTCAATGGAAGTTGAAGAGATCGTGAATAATGTGATTGCGGCCATTGATGGGATTGCAGAGATTGTGCCTAAGAAATGGAGCAATGTGCAATCATTTCATTTGAAGGTCCTGGAATCTATTGCATTGCCACTTTACCAAACAGTGCCGGAGTTGAAAATGAAGATTGAGGCGGCCGTGAGGGGTAAAGAAGAGGAAACAAACAAAGAAATAGCAGATGCAGGTAAGAGTCCTACTCCTGTAAAGGTCAATAACAAAAAGGAGAAGAAGTTGGGCAAGAAGAAGGGGAGGATACATGAAGTTCGTTATATGGACAGTAATGGCTTAAAGCTATCTGAAGAAGAAGATGAACAGGACAGTGATGTTGATGAGGTTAGTGAGAATATCGAAAAGGGTAAGAAATGGAGTAGAGTAAAGAAAACGAAGGAAGAGCTTCAAAGTGAGTTGAATGTCGAGAAAACATCGAAGAAGAAGAAGAAGAAGAATGGAGATGAAGAATCCAGTGGGAAGAAGGTGAAAAAGACAAAGAAGTTGAAAGAAGTGAAATGA

Coding sequence (CDS)

ATGGCTTCGCCGGATTCTGATACTCTCTCTTCCAGAGTTCGTCGGGAAACGGCGGAGAAAGCCGTCGAATCCCTCCTTCAATGGCGAAGTTCCAAACGAGAGAAGCCTCAACTTCTGGACCAGGAGGATTTTTTATACCTCGTCGTTACTCTCAAGAAAATCCCTCCAAAAGGTCGTACAAACCCTTACAAAATCCCTCTTCCCCATCCTCTTCGTTCTGAATCGTCTGAACTCTGCCTCATAATCGACGATAGAACCAAGTCCAATCTTACCAAAGACGACGCCAGGAAGAAAATCCAGTCGGAAAACATCCCGATTTCGAAGGTCATCAAGCTGTCGAAGCTTAAATCCGATTACCGCCCCTTTGAAGCGAAACGGAAGCTCTGCGATTCGTACGATATGTTTTTCGCCGATGATCGGGTTATTCCAATGCTGCCGAGTCTGTTGGGGAAGCACTTTTTCAAGAAGAAAAAAATTCCAGTGCCGTTGAATTTGAGGCATAAGAATTGGAAAGAACAGATCGAGAAGAGCTGTTCGTCGGGTTTGTTGTATTTGAGGAGAGGGACTTGTAGTGTGGTGAAAGTGGCAAAGACGTCAATGGAAGTTGAAGAGATCGTGAATAATGTGATTGCGGCCATTGATGGGATTGCAGAGATTGTGCCTAAGAAATGGAGCAATGTGCAATCATTTCATTTGAAGGTCCTGGAATCTATTGCATTGCCACTTTACCAAACAGTGCCGGAGTTGAAAATGAAGATTGAGGCGGCCGTGAGGGGTAAAGAAGAGGAAACAAACAAAGAAATAGCAGATGCAGGTAAGAGTCCTACTCCTGTAAAGGTCAATAACAAAAAGGAGAAGAAGTTGGGCAAGAAGAAGGGGAGGATACATGAAGTTCGTTATATGGACAGTAATGGCTTAAAGCTATCTGAAGAAGAAGATGAACAGGACAGTGATGTTGATGAGGTTAGTGAGAATATCGAAAAGGGTAAGAAATGGAGTAGAGTAAAGAAAACGAAGGAAGAGCTTCAAAGTGAGTTGAATGTCGAGAAAACATCGAAGAAGAAGAAGAAGAAGAATGGAGATGAAGAATCCAGTGGGAAGAAGGTGAAAAAGACAAAGAAGTTGAAAGAAGTGAAATGA

Protein sequence

MASPDSDTLSSRVRRETAEKAVESLLQWRSSKREKPQLLDQEDFLYLVVTLKKIPPKGRTNPYKIPLPHPLRSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYRPFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSSGLLYLRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIALPLYQTVPELKMKIEAAVRGKEEETNKEIADAGKSPTPVKVNNKKEKKLGKKKGRIHEVRYMDSNGLKLSEEEDEQDSDVDEVSENIEKGKKWSRVKKTKEELQSELNVEKTSKKKKKKNGDEESSGKKVKKTKKLKEVK

Homology

[Close]

BLAST of Cp4.1LG05g03380 vs. Swiss-Prot
Match: RL1D1_PONAB (Ribosomal L1 domain-containing protein 1 OS=Pongo abelii GN=RSL1D1 PE=2 SV=2)

HSP 1 Score: 134.8 bits (338), Expect = 2.0e-30
Identity = 112/384 (29.17%), Postives = 203/384 (52.86%), Query Frame = 1


Query: 2   ASPDSDTLSSRVRRETAEKAVESLL-QWRSSKREKPQLLDQEDFLYLVVTLKKIPPKGRT 61
           ++P + T   ++ +E   KAV++LL   +S K     LL++ + L+L+V L KIP K   
Sbjct: 20  STPAAPTARKQLDKEQVRKAVDALLTHCKSRKNNYGLLLNENESLFLMVVLWKIPSKELR 79

Query: 62  NPYKIPLPHPLRSESSELCLIIDDRTKSNLTKDDA--RKKIQSENIP-ISKVIKLSKLKS 121
              ++ LPH +RS+S ++CL   D   S   K +   RK +    I  +S++I L  LK 
Sbjct: 80  --VRLTLPHSIRSDSEDICLFTKDEPNSTPEKTEQFYRKLLNKHGIKTVSQIISLQTLKK 139

Query: 122 DYRPFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKS 181
           +Y+ +EAK +L  S+D F  D R+  +LPSL+G+HF+++KK+PV +NL  KN   +I   
Sbjct: 140 EYKSYEAKLRLLSSFDFFLTDARIRRLLPSLIGRHFYQRKKVPVSVNLLSKNLSREINDC 199

Query: 182 CSSGLLYL-RRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLE 241
               +L + + G+CS +++    M++E I+ N++A   G++E +P+KW +V+   +K  +
Sbjct: 200 IGGTVLNISKSGSCSAIRIGHVGMQIEHIIENIVAVTKGLSEKLPEKWESVKLLFVKTEK 259

Query: 242 SIALPLYQTVPELKMKIEAAVRGKEEETNKEIADAGKSPTPVK---VNNKKEKKLGKKKG 301
           S ALP++ +           V   +E T + + +  K     K    N +K+K+  KK+ 
Sbjct: 260 SAALPIFSSF----------VSNWDEATKRSLLNKKKKEARRKRRERNFEKQKERKKKRQ 319

Query: 302 RIHEVRYMDSNGLKLSEEED----EQDSDVDEVSENIEK--GKKWSRVKKTKE---ELQS 361
           +  +   + S      E  D    + +S  ++  E+ +K  G+  ++VK T E   E+  
Sbjct: 320 QARKTASVLSKDDVAPESGDTTVKKPESKKEQTPEHGKKKRGRGKAQVKATNESEDEIPQ 379

Query: 362 ELNVEKTSKKKKKKNGDEESSGKK 369
            + + K +   +K    + ++GKK
Sbjct: 380 LVPIGKKTPANEKVEIQKHATGKK 391

[Close]

BLAST of Cp4.1LG05g03380 vs. Swiss-Prot
Match: RL1D1_HUMAN (Ribosomal L1 domain-containing protein 1 OS=Homo sapiens GN=RSL1D1 PE=1 SV=3)

HSP 1 Score: 134.8 bits (338), Expect = 2.0e-30
Identity = 112/384 (29.17%), Postives = 203/384 (52.86%), Query Frame = 1


Query: 2   ASPDSDTLSSRVRRETAEKAVESLL-QWRSSKREKPQLLDQEDFLYLVVTLKKIPPKGRT 61
           ++P + T   ++ +E   KAV++LL   +S K     LL++ + L+L+V L KIP K   
Sbjct: 20  STPAAPTARKQLDKEQVRKAVDALLTHCKSRKNNYGLLLNENESLFLMVVLWKIPSKELR 79

Query: 62  NPYKIPLPHPLRSESSELCLIIDDRTKSNLTKDDA--RKKIQSENIP-ISKVIKLSKLKS 121
              ++ LPH +RS+S ++CL   D   S   K +   RK +    I  +S++I L  LK 
Sbjct: 80  --VRLTLPHSIRSDSEDICLFTKDEPNSTPEKTEQFYRKLLNKHGIKTVSQIISLQTLKK 139

Query: 122 DYRPFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKS 181
           +Y+ +EAK +L  S+D F  D R+  +LPSL+G+HF+++KK+PV +NL  KN   +I   
Sbjct: 140 EYKSYEAKLRLLSSFDFFLTDARIRRLLPSLIGRHFYQRKKVPVSVNLLSKNLSREINDC 199

Query: 182 CSSGLLYL-RRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLE 241
               +L + + G+CS +++    M++E I+ N++A   G++E +P+KW +V+   +K  +
Sbjct: 200 IGGTVLNISKSGSCSAIRIGHVGMQIEHIIENIVAVTKGLSEKLPEKWESVKLLFVKTEK 259

Query: 242 SIALPLYQTVPELKMKIEAAVRGKEEETNKEIADAGKSPTPVK---VNNKKEKKLGKKKG 301
           S ALP++ +           V   +E T + + +  K     K    N +K+K+  KK+ 
Sbjct: 260 SAALPIFSSF----------VSNWDEATKRSLLNKKKKEARRKRRERNFEKQKERKKKRQ 319

Query: 302 RIHEVRYMDSNGLKLSEEED----EQDSDVDEVSENIEK--GKKWSRVKKTKE---ELQS 361
           +  +   + S      E  D    + +S  ++  E+ +K  G+  ++VK T E   E+  
Sbjct: 320 QARKTASVLSKDDVAPESGDTTVKKPESKKEQTPEHGKKKRGRGKAQVKATNESEDEIPQ 379

Query: 362 ELNVEKTSKKKKKKNGDEESSGKK 369
            + + K +   +K    + ++GKK
Sbjct: 380 LVPIGKKTPANEKVEIQKHATGKK 391

[Close]

BLAST of Cp4.1LG05g03380 vs. Swiss-Prot
Match: RL1D1_BOVIN (Ribosomal L1 domain-containing protein 1 OS=Bos taurus GN=RSL1D1 PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 5.7e-30
Identity = 91/302 (30.13%), Postives = 166/302 (54.97%), Query Frame = 1


Query: 2   ASPDSDTLSSRVRRETAEKAVESLLQW-RSSKREKPQLLDQEDFLYLVVTLKKIPPKGRT 61
           ++P++     ++  E  +KAVE+LL   RS K     LL++ +  +L+V L KIP K   
Sbjct: 18  STPETPPGPEQLDEEQVKKAVEALLAHSRSRKNANGLLLNENENFFLMVVLWKIPSKELR 77

Query: 62  NPYKIPLPHPLRSESSELCLIIDDRTK--SNLTKDDARKKIQSENIP-ISKVIKLSKLKS 121
              ++ LPH +RS+ +++CL   D     S  T+   +K + +  I  IS++I    LK 
Sbjct: 78  --VRLSLPHGIRSDLADVCLFTKDEPNLSSEQTERYYKKLLNNHGIKTISQIIPFRTLKK 137

Query: 122 DYRPFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKS 181
           +Y+ +EAK +L  S+D F  D R+  +LPS LG+HF+ +KK+PV +NL+ K    +I   
Sbjct: 138 EYKAYEAKLRLLGSFDFFITDARIRRLLPSHLGRHFYNRKKVPVSVNLQSKTLSREINDC 197

Query: 182 CSSGLLYL-RRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLE 241
               +L + + G+CS +++  T M ++ IV NV+A    +++ +P+KW +V+   +K   
Sbjct: 198 IGGTVLNISKSGSCSTIRIGHTGMPIQHIVENVVAVAKSLSQKLPEKWESVKLLFVKTER 257

Query: 242 SIALPLYQTVPELKMKIEAAVRG-KEEETNKEIADAGKSPTP---VKVNNKKEKKLGKKK 295
           S++LP++ +     +  +   +G +  +  K+++   +  T     +   KKEKKL K+ 
Sbjct: 258 SVSLPVFSSF----VSSQGEAKGLRTRDLLKKVSKKSRKKTERALKRQQEKKEKKLLKQA 313

[Close]

BLAST of Cp4.1LG05g03380 vs. Swiss-Prot
Match: RL1D1_MOUSE (Ribosomal L1 domain-containing protein 1 OS=Mus musculus GN=Rsl1d1 PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.8e-28
Identity = 110/364 (30.22%), Postives = 189/364 (51.92%), Query Frame = 1


Query: 15  RETAEKAVESLLQWRSSKREKPQLL-DQEDFLYLVVTLKKIPPKGRTNPYKIPLPHPLRS 74
           RE   KAVE +     SK+   +LL    + L+L+V L KIP K      K+PLPH + S
Sbjct: 33  REQIRKAVEVISNRSKSKKNNNELLLSGSENLFLMVILWKIPEKELR--VKVPLPHSILS 92

Query: 75  ESSELCLIIDDRTKSNLTKDDARKKIQSEN--IPISKVIKLSKLKSDYRPFEAKRKLCDS 134
           ESS++CL   D   S    +   KK+  ++    IS++I    LK++Y+ +EAK +L  S
Sbjct: 93  ESSDVCLFTKDEFDSPEQTEGFYKKLLKKHGVNTISQIIPFKTLKTEYKAYEAKLRLLGS 152

Query: 135 YDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSSGLLYL-RRGTC 194
           +++F  D R+   LPS +G+HF+++KK+PV +NL  KN  ++I +  +  +L + +RG+C
Sbjct: 153 FEVFITDARIRRHLPSHIGRHFYQRKKVPVSVNLLAKNLSKEINRCITGTVLNISKRGSC 212

Query: 195 SVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIALPLYQTVPELK 254
           S +++  T ME E IV+N++A  + ++E +P+KW +V+   LK  +S++LP++ +    +
Sbjct: 213 STIRIGHTGMETEHIVDNILAVSEMLSEKLPEKWQSVKLLFLKTEKSVSLPIFSSFVTSQ 272

Query: 255 MKIEAAVRG-KEEETNKEIADAGKSPTPVKVNNKKEKK---LGKKKGRIHEVRYMDSNGL 314
            +   ++R  +++E  K   +  K     K+  KK KK   L  + G             
Sbjct: 273 DENAVSLRSLRKQELKKRKRENAKLKKESKMLRKKSKKATSLLTQSGLASSAPAKSPGAQ 332

Query: 315 KLSEEEDEQDSDVDEVSENIEKGKKWSRVKKTKEELQSELNVEKTSKKKKKKNGDEESSG 371
           K    +  +   V E  E  E   +   + +T ++   ++    T K  K K+      G
Sbjct: 333 KKKTNKAHKKQKVTEECE--EAIPQLVPIGETPDKENVKMQENITGKTPKSKSDPSTPKG 392

[Close]

BLAST of Cp4.1LG05g03380 vs. Swiss-Prot
Match: RL1DB_SCHPO (Putative ribosome biogenesis protein C8F11.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC8F11.04 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.6e-24
Identity = 122/384 (31.77%), Postives = 192/384 (50.00%), Query Frame = 1


Query: 19  EKAVESLLQWRSSKR---------EKPQLL-DQEDFLYLV----VTLKKIPPKGRTNPYK 78
           EK   +LL++ S ++         +K  LL D++D +  V     TLK I    +  PYK
Sbjct: 14  EKVCSALLEYESKRKSSENIDSESKKTNLLEDEQDDIEPVWLQLATLKFIGNNRKLIPYK 73

Query: 79  IPLPHPLRSESSELCLIIDD--RTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYRPF 138
           I + +P+   SSE CLI+ D  R   +L  +    K+      +++VI LSKLK+ +  +
Sbjct: 74  IAIKNPVIPSSSEACLIVKDPQRVYKDLVNEAGLSKV------VTRVIGLSKLKAKWNSY 133

Query: 139 EAKRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSS-- 198
           E KR+L D +D+F ADDRVIPMLP +LGK F++K K+PVP+ +  K   EQ+++   S  
Sbjct: 134 EQKRQLRDQFDIFLADDRVIPMLPRILGKTFYQKSKVPVPVKI-SKGTAEQLKREVVSAY 193

Query: 199 GLLYLRRGTCS--VVK---VAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVL 258
           G  Y     CS  ++K   V+ TS E+ E V +++  +     IVP     + S HLK  
Sbjct: 194 GATYFNSAPCSSFMIKCGHVSNTSTELAENVESILQFVS--KHIVPDGAKGIASIHLKTS 253

Query: 259 ESIALPLYQTVPELKMKIEAA--VRGKEEETNKEIADAGKSPTPVKVNNKKEKKLGKKKG 318
           +SIA+PL+   P LK  I ++  V  KE  ++K  +D    P     + KK+KK+   K 
Sbjct: 254 QSIAIPLWNN-PNLKELIASSRKVVTKETASSKRKSDEESLP-----SQKKQKKVEVAK- 313

Query: 319 RIHEVRYMDSNGLKLSEEEDEQDSDVDEVSENIEKGKKWSRVKKTKEELQSELNVEKTSK 378
                           E +D +  +V +  +             T +E+  +L+V+  + 
Sbjct: 314 ----------------ESKDSKQQNVSDKKQ------------VTVKEVPKKLSVKNAA- 350

[Close]

BLAST of Cp4.1LG05g03380 vs. TrEMBL
Match: A0A0A0KML2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G154220 PE=4 SV=1)

HSP 1 Score: 521.9 bits (1343), Expect = 6.4e-145
Identity = 284/366 (77.60%), Postives = 319/366 (87.16%), Query Frame = 1


Query: 8   TLSSRVRRETAEKAVESLLQWRSSKREKPQLLDQEDFLYLVVTLKKIPPKGRTNPYKIPL 67
           T +++VRRETA KAVESLLQWR+SKREKPQL DQEDFLYL+VTLKKIPPKGRTNPYKIPL
Sbjct: 7   TPTTKVRRETAAKAVESLLQWRNSKREKPQLFDQEDFLYLIVTLKKIPPKGRTNPYKIPL 66

Query: 68  PHPLRSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYRPFEAKRK 127
           PH L S+SSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYRPFEAKRK
Sbjct: 67  PHSLHSDSSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYRPFEAKRK 126

Query: 128 LCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSSGLLYLRR 187
           LCDSYDMFFADDRVIP+LPSLLGKHF+KKKKIPVPLNLRHKNWKEQ+E+SCSSGLLYLR 
Sbjct: 127 LCDSYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQVERSCSSGLLYLRT 186

Query: 188 GTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIALPLYQTVP 247
           GTCSVVKVA+TSMEVEEIV+NVIAAIDGIAE+VPKKWSNV+SF LKVLESIALP+YQTVP
Sbjct: 187 GTCSVVKVARTSMEVEEIVDNVIAAIDGIAEVVPKKWSNVRSFFLKVLESIALPIYQTVP 246

Query: 248 ELKMKIEAAVRGKEEETNKEIADAGKSPTPVKVNNKKEKKLGKKKGRIHEVRYMDSNGLK 307
           ELK KIEA V+GKE+E  KE  +A KSPTPVKV +KKE+KL KKKGRIHE+RYMD+NG +
Sbjct: 247 ELKFKIEAGVKGKEDEITKE-EEAAKSPTPVKVGSKKERKLSKKKGRIHEIRYMDTNGRE 306

Query: 308 LSEEEDEQDSDVDEVSENIEKGKKWSRVKKTKEELQSELNVEKTSKKKKKKNGDEESSGK 367
           LS E++  D D  EV+EN++KG     +KK K++      V+K+   K K  G+ +   K
Sbjct: 307 LSNEDEGSDLDDVEVNENLKKGS--DELKKGKKK-----KVKKSEVSKSKAAGETKVKAK 364

Query: 368 KVKKTK 374
           KVK  K
Sbjct: 367 KVKTAK 364

[Close]

BLAST of Cp4.1LG05g03380 vs. TrEMBL
Match: W9RT08_9ROSA (Ribosomal L1 domain-containing protein 1 OS=Morus notabilis GN=L484_021401 PE=4 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 2.1e-100
Identity = 222/377 (58.89%), Postives = 275/377 (72.94%), Query Frame = 1


Query: 4   PDSDTLSSRVRRETAEKAVESLLQWRSSKRE--KPQLLDQEDFLYLVVTLKKIPPKGRTN 63
           P S   ++R+  +T ++AV SLL+WR+SK +   PQLLD ++F+YL++TLKKIP K R N
Sbjct: 11  PSSTDANARMSPKTVQRAVNSLLKWRNSKSQTQNPQLLDDDEFVYLILTLKKIPSKDRIN 70

Query: 64  PYKIPLPHPLRS-ESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYR 123
            +KIPLPHPL + ESSELCL IDDR KS LTKDDA KKI+SE IP+SKV+KLSKLKSDYR
Sbjct: 71  AHKIPLPHPLHAGESSELCLFIDDRPKSGLTKDDAMKKIKSEGIPVSKVLKLSKLKSDYR 130

Query: 124 PFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSS 183
           PFEAKRKLCDSYDMFFAD RV+P+LP LLGKHFFKK+KIPVP++L+H+NWKEQIEK+C S
Sbjct: 131 PFEAKRKLCDSYDMFFADKRVVPLLPRLLGKHFFKKRKIPVPVDLKHQNWKEQIEKACGS 190

Query: 184 GLLYLRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIAL 243
            LL+LR GTCSVV+VAK SM   EI  N +AAI+GIAEIVP+KW NV+SFHLK+LES+AL
Sbjct: 191 ALLFLRTGTCSVVRVAKASMGAAEIAENAMAAINGIAEIVPRKWGNVRSFHLKLLESVAL 250

Query: 244 PLYQTVPELKMKIEAAVRGKEEETNKEIADAGKSPTPVKVNNKKEKKLGKKKGRIHEVRY 303
           P+YQ +P++K+KIE     +E++T K     G+    V  + K  KK  KKKGRIHEVRY
Sbjct: 251 PVYQALPDIKLKIEGIKEDEEKKTEK-----GEGDKRVGEDEKAGKK--KKKGRIHEVRY 310

Query: 304 MDSNGLKLSEEEDEQDSDVDEVSENIEKGKKWSRVKKTKEELQSELNVEKTSKKKKKKNG 363
           MD N     ++EDE   D D   E+I KG+         E L S    E   KK+KK   
Sbjct: 311 MDVNHGVALDDEDELGGD-DNGGEDIAKGE-----DSENENLGSG---ELVGKKRKKGEL 370

Query: 364 DEESSGKKVKKTKKLKE 378
            +E   KK+ KT K K+
Sbjct: 371 ADEKPSKKLAKTVKDKD 371

[Close]

BLAST of Cp4.1LG05g03380 vs. TrEMBL
Match: F6HNZ4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0142g00200 PE=4 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 1.3e-97
Identity = 219/393 (55.73%), Postives = 282/393 (71.76%), Query Frame = 1


Query: 1   MASPDSDTLSSRVRRETAEKAVESLLQWRSSKR--EKPQLLDQED--FLYLVVTLKKIPP 60
           MASP +      V  ET EKA  +LL+W++SK   +KPQLL+Q++  F+YL++TLKKIPP
Sbjct: 17  MASPPA------VAAETIEKATTALLKWQASKSNGQKPQLLNQDEDRFIYLILTLKKIPP 76

Query: 61  KGRTNPYKIPLPHPLRSE-SSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKL 120
           KGRTNP+KIPLPHPL +  +SELCLI+DDR  S+LT   A+ K++SENIP+SKV+ LSKL
Sbjct: 77  KGRTNPHKIPLPHPLHTPPNSELCLIVDDRPNSHLTSQAAKTKVKSENIPVSKVLSLSKL 136

Query: 121 KSDYRPFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIE 180
           KS++RPFEAKRKLCDSYD F AD R++P+LP LLGKHFFKK+KIPV ++L HKNWKEQI+
Sbjct: 137 KSNFRPFEAKRKLCDSYDFFLADKRIVPLLPKLLGKHFFKKRKIPVAVDLGHKNWKEQID 196

Query: 181 KSCSSGLLYLRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVL 240
           ++C S LLYLR GTCSVV+V K SME E+IV NV+AAIDG+ E+VPKK + V+S HLK+L
Sbjct: 197 RACGSALLYLRTGTCSVVRVGKLSMEKEQIVENVVAAIDGVVELVPKKLAGVRSLHLKLL 256

Query: 241 ESIALPLYQTVPELKMKIEAAVRGKEEETNKEIADAGKSPTPVKVNNKKEKKLGKKKGRI 300
           ES+ALP+YQ VP++++KIE  +  KE E  KE  ++G      +V   ++KK+G KKGRI
Sbjct: 257 ESLALPVYQAVPDMRLKIEGVLE-KESEEVKEEEESG------RVEKGEKKKVG-KKGRI 316

Query: 301 HEVRYMDSNGLKLSEEEDEQDSDVDEVSENIEK------------GKKWSRVKKTKEELQ 360
           HEVRYMD +   L  EEDE D D DE  +  +K            GKK  + K  KE+  
Sbjct: 317 HEVRYMDGDVGGLL-EEDELDGDGDEDDDEGDKSADDELGGGEIVGKKRKKEKTKKEQAL 376

Query: 361 SELNVEKTSKKKKKKNGDEESSGKKVKKTKKLK 377
           S+LN EK  KK KK   ++E   KK K    +K
Sbjct: 377 SDLNGEKPLKKSKKVKKEDEEKQKKKKDRLNVK 394

[Close]

BLAST of Cp4.1LG05g03380 vs. TrEMBL
Match: A0A067L5R8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22354 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 1.7e-97
Identity = 209/370 (56.49%), Postives = 271/370 (73.24%), Query Frame = 1


Query: 11  SRVRRETAEKAVESLLQWRSSKRE--KPQLLDQEDFLYLVVTLKKIPPKG--RTNPYKIP 70
           S V  +T E+A+ +LL+WR++K E  KPQLL+ ++F+YL++TLKKIP KG  R NPYK+ 
Sbjct: 8   SGVSPKTIERAIGALLKWRAAKSETQKPQLLESDEFVYLILTLKKIPQKGVSRVNPYKVS 67

Query: 71  LPHPL---RSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYRPFE 130
           LP+PL   ++++SELCLIIDDR KS LTKD A+KKIQ++NIPISK+IKLSKLK+DYRPFE
Sbjct: 68  LPNPLINPQNDNSELCLIIDDRPKSGLTKDAAQKKIQNDNIPISKIIKLSKLKTDYRPFE 127

Query: 131 AKRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSSGLL 190
           AKRKLCDSYDMFFAD RVIP+LP +LGK FFKKKKIPV ++L+HKNWKEQI+K+C SGLL
Sbjct: 128 AKRKLCDSYDMFFADRRVIPLLPKMLGKQFFKKKKIPVAVDLKHKNWKEQIDKACGSGLL 187

Query: 191 YLRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIALPLY 250
           +L  GTCSVVKV + SM  EE+VNNV+AAI+ IAEIVP+KW  ++S HLK+LES+ALPLY
Sbjct: 188 FLSTGTCSVVKVGRVSMGKEEMVNNVVAAINEIAEIVPRKWGGIRSLHLKLLESLALPLY 247

Query: 251 QTVPELKMKIEAA-VRGKEEETNKEIADAGKSPTPVKVNNKKEKKLGKKKGRIHEVRYMD 310
           + +P+ K+KIE      KEEET KE                KE+K+GKKKGRIHE+RY+D
Sbjct: 248 EALPDFKLKIEGVREEKKEEETEKETV--------------KEEKVGKKKGRIHEIRYLD 307

Query: 311 S--NGLKLSEEEDEQDSDVDEVSENIEKGKKWSRVKKTKEELQSELNVEKTSKKKKKKNG 370
              N  ++  + D+ D D+   +E+ E  K    +   K +   +  VEK +K KK+   
Sbjct: 308 DIVNDDEIELKSDDSDEDIASDNEDNEGEKGIGELDVKKRKKGDKGKVEKRAKAKKEDGV 363

[Close]

BLAST of Cp4.1LG05g03380 vs. TrEMBL
Match: A5BSP3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020727 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 4.9e-97
Identity = 218/393 (55.47%), Postives = 281/393 (71.50%), Query Frame = 1


Query: 1   MASPDSDTLSSRVRRETAEKAVESLLQWRSSKR--EKPQLLDQED--FLYLVVTLKKIPP 60
           MASP +      V  ET EKA  +LL+W++SK   +KPQLL+Q++  F+YL++TLKKIPP
Sbjct: 1   MASPPA------VAAETIEKATTALLKWQASKSNGQKPQLLNQDEDRFIYLILTLKKIPP 60

Query: 61  KGRTNPYKIPLPHPLRSE-SSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKL 120
           KGRTNP+KIPLPHPL +  +SELCLI+DDR  S+LT   A+ K++SENIP+SKV+ LSKL
Sbjct: 61  KGRTNPHKIPLPHPLHTPPNSELCLIVDDRPNSHLTSQAAKTKVKSENIPVSKVLSLSKL 120

Query: 121 KSDYRPFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIE 180
           KS++RPFEAKRKLCDSYD F AD R++P+LP LLGKHFFKK+KIPV ++L HKNWKEQI+
Sbjct: 121 KSNFRPFEAKRKLCDSYDFFLADKRIVPLLPKLLGKHFFKKRKIPVAVDLGHKNWKEQID 180

Query: 181 KSCSSGLLYLRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVL 240
           ++C S LLYLR GTCSVV+V K SME E+IV NV+AAIDG+ E+VPKK + V+S HLK+L
Sbjct: 181 RACGSALLYLRTGTCSVVRVGKLSMEKEQIVENVVAAIDGVVELVPKKLAGVRSLHLKLL 240

Query: 241 ESIALPLYQTVPELKMKIEAAVRGKEEETNKEIADAGKSPTPVKVNNKKEKKLGKKKGRI 300
           ES+ALP+YQ VP++++KIE  +  KE E  KE  ++G      +V   ++KK+G KKGRI
Sbjct: 241 ESLALPVYQAVPDMRLKIEGVLE-KESEEVKEEEESG------RVEKGEKKKVG-KKGRI 300

Query: 301 HEVRYMDSNGLKLSEEEDEQDSDVDEVSENIEK------------GKKWSRVKKTKEELQ 360
           HEVRYMD +   L  EEDE D D DE  +  +K            GKK  +    KE+  
Sbjct: 301 HEVRYMDGDVGGLL-EEDELDGDGDEDDDEGDKSADDELGGGEIVGKKRKKXXTKKEQAL 360

Query: 361 SELNVEKTSKKKKKKNGDEESSGKKVKKTKKLK 377
           S+LN EK  KK KK   ++E   KK K    +K
Sbjct: 361 SDLNGEKPLKKSKKVKKEDEEKQKKKKDRLNVK 378

[Close]

BLAST of Cp4.1LG05g03380 vs. TAIR10
Match: AT3G58660.1 (AT3G58660.1 Ribosomal protein L1p/L10e family)

HSP 1 Score: 342.4 bits (877), Expect = 3.5e-94
Identity = 208/382 (54.45%), Postives = 270/382 (70.68%), Query Frame = 1


Query: 10  SSRVRRETAEKAVESLLQWRS--SKREKPQLLDQEDFLYLVVTLKKIPPKGRTNPYKIPL 69
           +SRV  +T E A+  L+ WRS  SK EKPQLL++++ +YL VTLKKIP K RTN Y+IPL
Sbjct: 21  TSRVSPKTVESALNGLINWRSDKSKTEKPQLLEEDELVYLFVTLKKIPQKTRTNAYRIPL 80

Query: 70  PHPLRS---ESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYRPFEA 129
           PHPL +   +S E+CLIIDDR KS LTKDDA KKI+SENIPI+KVIKLSKLKSDY+ FEA
Sbjct: 81  PHPLINPTVDSPEICLIIDDRPKSGLTKDDAMKKIKSENIPITKVIKLSKLKSDYKAFEA 140

Query: 130 KRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSSGLLY 189
           KRKLCDSYDMFF D R+IP+LP ++GK FF  KKIPV L+L+H+NWK QIEK+C S + +
Sbjct: 141 KRKLCDSYDMFFTDRRIIPLLPRVIGKKFFTSKKIPVALDLKHRNWKHQIEKACGSAMFF 200

Query: 190 LRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIALPLYQ 249
           +R GTCSV+KV K SM++ EI  NV+A ++G+ E +P KW+ V+S HLK+ ES+ALP+YQ
Sbjct: 201 IRTGTCSVIKVGKLSMDICEITENVMATLNGLVEFLPNKWTYVRSLHLKLSESLALPIYQ 260

Query: 250 TVPELKMKIEAAVRGK---EEETNKEIADAGKSPTPVKVNNKKEKKLG---KKKGRIHEV 309
           +VP+LK+KI+A   GK   +EE   E+ +       V V+  ++   G   KKKGRIHEV
Sbjct: 261 SVPDLKLKIDAFGSGKSVVQEEKEGEVEEV------VAVDGGEKSVTGKGKKKKGRIHEV 320

Query: 310 RYMDSNGLK-LSEEEDEQDSDVDEVSENIEKGKKWSRVKKTKEELQSELNVEKTSKKKKK 369
           RYMDSN  + L E+E   D D +E+ E+ EK  K  R K+  E  +SE  ++K +K K K
Sbjct: 321 RYMDSNVAEVLDEDEIGGDEDNNEIVESEEKKMK-KRKKEVSEVAESEKPMKKAAKGKLK 380

Query: 370 KNGDEESSGKKVKKTKKLKEVK 380
              D E   KK  K K   +V+
Sbjct: 381 P--DVEKPMKKAAKGKSKPDVE 393

[Close]

BLAST of Cp4.1LG05g03380 vs. TAIR10
Match: AT2G42650.1 (AT2G42650.1 Ribosomal protein L1p/L10e family)

HSP 1 Score: 314.3 bits (804), Expect = 1.0e-85
Identity = 187/376 (49.73%), Postives = 261/376 (69.41%), Query Frame = 1


Query: 11  SRVRRETAEKAVESLLQW--RSSKREKPQLLDQEDFLYLVVTLKKIPPKGRTNPYKIPLP 70
           SRV  +T + AV++L++     S+ EKPQLL+++ F YLVV LKKIP +  TN Y+IPLP
Sbjct: 2   SRVSPKTVDDAVKALVKEGNEKSRTEKPQLLEEDGFFYLVVALKKIPQRNFTNAYRIPLP 61

Query: 71  HPL---RSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYRPFEAK 130
           HPL     +S ELCLIIDDR +S LT++DA+K I+SENIPI+KV+KLSKLKSDY  FE+K
Sbjct: 62  HPLINTTEDSPELCLIIDDRPESGLTEEDAKKNIKSENIPITKVVKLSKLKSDYGSFESK 121

Query: 131 RKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSSGLLYL 190
           RKLCDSYDMFF+D RVIPMLP L+GK FF+ KK PV ++L+H NWKEQIEK+C + + ++
Sbjct: 122 RKLCDSYDMFFSDRRVIPMLPKLIGKKFFQSKKTPVAIDLKHMNWKEQIEKACGAAMFFM 181

Query: 191 RRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIALPLYQT 250
           R G+CS +KVAK SME ++IV NV A ++G+ +++P +W  ++S HLK+ ES++LPLYQT
Sbjct: 182 RTGSCSAIKVAKLSMESDDIVENVTATLNGVVDVLPSRWKYIRSLHLKLSESLSLPLYQT 241

Query: 251 VPELKMKIEAAVRGKEEETNKEIADAGKSPTPVKVNNKKEKKLGKKKGRIHEVRYMDSN- 310
           VP L++KI+    G EE  N E    G + + V  ++ K  K  KK G+IHEVRYMDSN 
Sbjct: 242 VPYLQLKIDPL--GVEEVKNGE----GLAKSDVDDSSSKSVKTKKKNGKIHEVRYMDSNV 301

Query: 311 GLKLSEEEDEQDSDVDEVSENIEKG---KKWSRVKKTKEELQSELNVEKT---SKKKKKK 370
              L ++E ++    DEV++++      KK  ++  +K  +  + ++ K+    K KK K
Sbjct: 302 SETLGDDEFDRSVGEDEVADDLNASGDKKKRKKMSSSKSAVSGKPDIVKSKNGQKSKKLK 361

Query: 371 NGDEESSGKKVKKTKK 375
              +ES G    KTK+
Sbjct: 362 KDIDESGGGFKAKTKR 371

[Close]

BLAST of Cp4.1LG05g03380 vs. TAIR10
Match: AT1G06380.1 (AT1G06380.1 Ribosomal protein L1p/L10e family)

HSP 1 Score: 251.5 bits (641), Expect = 8.1e-67
Identity = 130/242 (53.72%), Postives = 177/242 (73.14%), Query Frame = 1


Query: 11  SRVRRETAEKAVESLLQW--RSSKREKPQLLDQEDFLYLVVTLKKIPPKGRTNPYKIPLP 70
           S+V  +   +AV+SLL+W    SK E  + L+ + F+YL+VTLK+IP   RTNP  IPLP
Sbjct: 16  SKVDPQNVNRAVKSLLKWWDSKSKTENSESLENDGFVYLIVTLKRIPQLDRTNPLMIPLP 75

Query: 71  HPL----RSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYRPFEA 130
           HPL      +  ELCLIIDD+ K+ +TK+ A KKI++E IPI+ VIK+SKLKSD R  E 
Sbjct: 76  HPLIDLVAEDPPELCLIIDDKHKNKITKEAALKKIEAEKIPITTVIKVSKLKSDLRKLEE 135

Query: 131 KRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSSGLLY 190
           +++    ++++FA+ R++PMLP LLGK F KK K P+ +NLRH +WKEQIEK+C S L +
Sbjct: 136 EKR----FELYFAERRLMPMLPKLLGKEFVKKNKTPIAINLRHGSWKEQIEKACESALFF 195

Query: 191 LRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIALPLYQ 247
           +  GTCSVVKVAK SM   EI  NV+AA++GI ++VP +W NV+ FHLK+LES+ALP+YQ
Sbjct: 196 VGTGTCSVVKVAKLSMGRNEIAENVVAAMNGIGDLVPGRWKNVKLFHLKLLESLALPVYQ 253

[Close]

BLAST of Cp4.1LG05g03380 vs. NCBI nr
Match: gi|449452340|ref|XP_004143917.1| (PREDICTED: ribosomal L1 domain-containing protein 1-like [Cucumis sativus])

HSP 1 Score: 521.9 bits (1343), Expect = 9.1e-145
Identity = 284/366 (77.60%), Postives = 319/366 (87.16%), Query Frame = 1


Query: 8   TLSSRVRRETAEKAVESLLQWRSSKREKPQLLDQEDFLYLVVTLKKIPPKGRTNPYKIPL 67
           T +++VRRETA KAVESLLQWR+SKREKPQL DQEDFLYL+VTLKKIPPKGRTNPYKIPL
Sbjct: 7   TPTTKVRRETAAKAVESLLQWRNSKREKPQLFDQEDFLYLIVTLKKIPPKGRTNPYKIPL 66

Query: 68  PHPLRSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYRPFEAKRK 127
           PH L S+SSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYRPFEAKRK
Sbjct: 67  PHSLHSDSSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYRPFEAKRK 126

Query: 128 LCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSSGLLYLRR 187
           LCDSYDMFFADDRVIP+LPSLLGKHF+KKKKIPVPLNLRHKNWKEQ+E+SCSSGLLYLR 
Sbjct: 127 LCDSYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQVERSCSSGLLYLRT 186

Query: 188 GTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIALPLYQTVP 247
           GTCSVVKVA+TSMEVEEIV+NVIAAIDGIAE+VPKKWSNV+SF LKVLESIALP+YQTVP
Sbjct: 187 GTCSVVKVARTSMEVEEIVDNVIAAIDGIAEVVPKKWSNVRSFFLKVLESIALPIYQTVP 246

Query: 248 ELKMKIEAAVRGKEEETNKEIADAGKSPTPVKVNNKKEKKLGKKKGRIHEVRYMDSNGLK 307
           ELK KIEA V+GKE+E  KE  +A KSPTPVKV +KKE+KL KKKGRIHE+RYMD+NG +
Sbjct: 247 ELKFKIEAGVKGKEDEITKE-EEAAKSPTPVKVGSKKERKLSKKKGRIHEIRYMDTNGRE 306

Query: 308 LSEEEDEQDSDVDEVSENIEKGKKWSRVKKTKEELQSELNVEKTSKKKKKKNGDEESSGK 367
           LS E++  D D  EV+EN++KG     +KK K++      V+K+   K K  G+ +   K
Sbjct: 307 LSNEDEGSDLDDVEVNENLKKGS--DELKKGKKK-----KVKKSEVSKSKAAGETKVKAK 364

Query: 368 KVKKTK 374
           KVK  K
Sbjct: 367 KVKTAK 364

[Close]

BLAST of Cp4.1LG05g03380 vs. NCBI nr
Match: gi|659073785|ref|XP_008437252.1| (PREDICTED: ribosomal L1 domain-containing protein 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 491.1 bits (1263), Expect = 1.7e-135
Identity = 272/360 (75.56%), Postives = 304/360 (84.44%), Query Frame = 1


Query: 11  SRVRRETAEKAVESLLQWRSSKREKPQLLDQEDFLYLVVTLKKIPPKGRTNPYKIPLPHP 70
           ++V RETAEKAVESLLQWRSSKREKPQL DQEDFLYLVVTLKKIPPKGRTNPYKIPLPH 
Sbjct: 10  TKVGRETAEKAVESLLQWRSSKREKPQLFDQEDFLYLVVTLKKIPPKGRTNPYKIPLPHS 69

Query: 71  LRSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYRPFEAKRKLCD 130
           L S+SSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYRPFEAKRKLCD
Sbjct: 70  LHSDSSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYRPFEAKRKLCD 129

Query: 131 SYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSSGLLYLRRGTC 190
           SYDMFFADDRVIP+LPSLLGKHF+KKKKIPVPLNLRHKNWKEQIEK+CSSGLLYLR GTC
Sbjct: 130 SYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIEKTCSSGLLYLRTGTC 189

Query: 191 SVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIALPLYQTVPELK 250
           SVVKVAKTSM VEEIV+NVIAAIDGIAE+VPKKWSNV+SFHLKVLESIALP+YQTVPELK
Sbjct: 190 SVVKVAKTSMAVEEIVDNVIAAIDGIAEVVPKKWSNVRSFHLKVLESIALPIYQTVPELK 249

Query: 251 MKIEAAVRGKEEETNKEIADAGKSPTPVKVNNKKEKKLGKKKGRIHEVRYMDSNGLKLSE 310
            KIEA V+ K++E  +E  +A K P  VKV NKKEKKL KKKGRIHE+ YMD+NG +LS 
Sbjct: 250 FKIEAGVKRKQDEITEE-EEAVKIPASVKVTNKKEKKLSKKKGRIHEISYMDTNG-ELS- 309

Query: 311 EEDEQDSDVDEVSENIEKGKKWSRVKKTKEELQSELNVEKTSKKKKKKNGDEESSGKKVK 370
                    +++   ++KG   S      +E++ +  V+K++  K K  G  +   KK+K
Sbjct: 310 ---------NDMGVEVKKGLLGS------DEMKKKKKVKKSAVLKSKAAGGTKVKAKKLK 351

[Close]

BLAST of Cp4.1LG05g03380 vs. NCBI nr
Match: gi|659073783|ref|XP_008437251.1| (PREDICTED: ribosomal L1 domain-containing protein 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 488.8 bits (1257), Expect = 8.6e-135
Identity = 273/370 (73.78%), Postives = 304/370 (82.16%), Query Frame = 1


Query: 11  SRVRRETAEKAVESLLQWRSSKREKPQLLDQEDFLYLVVTLKKIPPKGRTNPYKIPLPHP 70
           ++V RETAEKAVESLLQWRSSKREKPQL DQEDFLYLVVTLKKIPPKGRTNPYKIPLPH 
Sbjct: 10  TKVGRETAEKAVESLLQWRSSKREKPQLFDQEDFLYLVVTLKKIPPKGRTNPYKIPLPHS 69

Query: 71  LRSESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYRPFEAKRKLCD 130
           L S+SSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYRPFEAKRKLCD
Sbjct: 70  LHSDSSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYRPFEAKRKLCD 129

Query: 131 SYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSSGLLYLRRGTC 190
           SYDMFFADDRVIP+LPSLLGKHF+KKKKIPVPLNLRHKNWKEQIEK+CSSGLLYLR GTC
Sbjct: 130 SYDMFFADDRVIPLLPSLLGKHFYKKKKIPVPLNLRHKNWKEQIEKTCSSGLLYLRTGTC 189

Query: 191 SVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIALPLYQTVPELK 250
           SVVKVAKTSM VEEIV+NVIAAIDGIAE+VPKKWSNV+SFHLKVLESIALP+YQTVPELK
Sbjct: 190 SVVKVAKTSMAVEEIVDNVIAAIDGIAEVVPKKWSNVRSFHLKVLESIALPIYQTVPELK 249

Query: 251 MKIEAAVR----------GKEEETNKEIADAGKSPTPVKVNNKKEKKLGKKKGRIHEVRY 310
            KIEA V+           KE+E  +E  +A K P  VKV NKKEKKL KKKGRIHE+ Y
Sbjct: 250 FKIEAGVKRKQDEITEEEAKEDEITEEEEEAVKIPASVKVTNKKEKKLSKKKGRIHEISY 309

Query: 311 MDSNGLKLSEEEDEQDSDVDEVSENIEKGKKWSRVKKTKEELQSELNVEKTSKKKKKKNG 370
           MD+NG +LS          +++   ++KG   S      +E++ +  V+K++  K K  G
Sbjct: 310 MDTNG-ELS----------NDMGVEVKKGLLGS------DEMKKKKKVKKSAVLKSKAAG 362

[Close]

BLAST of Cp4.1LG05g03380 vs. NCBI nr
Match: gi|703120740|ref|XP_010102167.1| (Ribosomal L1 domain-containing protein 1 [Morus notabilis])

HSP 1 Score: 374.0 bits (959), Expect = 3.1e-100
Identity = 222/377 (58.89%), Postives = 275/377 (72.94%), Query Frame = 1


Query: 4   PDSDTLSSRVRRETAEKAVESLLQWRSSKRE--KPQLLDQEDFLYLVVTLKKIPPKGRTN 63
           P S   ++R+  +T ++AV SLL+WR+SK +   PQLLD ++F+YL++TLKKIP K R N
Sbjct: 11  PSSTDANARMSPKTVQRAVNSLLKWRNSKSQTQNPQLLDDDEFVYLILTLKKIPSKDRIN 70

Query: 64  PYKIPLPHPLRS-ESSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKLKSDYR 123
            +KIPLPHPL + ESSELCL IDDR KS LTKDDA KKI+SE IP+SKV+KLSKLKSDYR
Sbjct: 71  AHKIPLPHPLHAGESSELCLFIDDRPKSGLTKDDAMKKIKSEGIPVSKVLKLSKLKSDYR 130

Query: 124 PFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIEKSCSS 183
           PFEAKRKLCDSYDMFFAD RV+P+LP LLGKHFFKK+KIPVP++L+H+NWKEQIEK+C S
Sbjct: 131 PFEAKRKLCDSYDMFFADKRVVPLLPRLLGKHFFKKRKIPVPVDLKHQNWKEQIEKACGS 190

Query: 184 GLLYLRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVLESIAL 243
            LL+LR GTCSVV+VAK SM   EI  N +AAI+GIAEIVP+KW NV+SFHLK+LES+AL
Sbjct: 191 ALLFLRTGTCSVVRVAKASMGAAEIAENAMAAINGIAEIVPRKWGNVRSFHLKLLESVAL 250

Query: 244 PLYQTVPELKMKIEAAVRGKEEETNKEIADAGKSPTPVKVNNKKEKKLGKKKGRIHEVRY 303
           P+YQ +P++K+KIE     +E++T K     G+    V  + K  KK  KKKGRIHEVRY
Sbjct: 251 PVYQALPDIKLKIEGIKEDEEKKTEK-----GEGDKRVGEDEKAGKK--KKKGRIHEVRY 310

Query: 304 MDSNGLKLSEEEDEQDSDVDEVSENIEKGKKWSRVKKTKEELQSELNVEKTSKKKKKKNG 363
           MD N     ++EDE   D D   E+I KG+         E L S    E   KK+KK   
Sbjct: 311 MDVNHGVALDDEDELGGD-DNGGEDIAKGE-----DSENENLGSG---ELVGKKRKKGEL 370

Query: 364 DEESSGKKVKKTKKLKE 378
            +E   KK+ KT K K+
Sbjct: 371 ADEKPSKKLAKTVKDKD 371

[Close]

BLAST of Cp4.1LG05g03380 vs. NCBI nr
Match: gi|225446867|ref|XP_002283850.1| (PREDICTED: ribosomal L1 domain-containing protein 1-like [Vitis vinifera])

HSP 1 Score: 364.8 bits (935), Expect = 1.9e-97
Identity = 219/393 (55.73%), Postives = 282/393 (71.76%), Query Frame = 1


Query: 1   MASPDSDTLSSRVRRETAEKAVESLLQWRSSKR--EKPQLLDQED--FLYLVVTLKKIPP 60
           MASP +      V  ET EKA  +LL+W++SK   +KPQLL+Q++  F+YL++TLKKIPP
Sbjct: 1   MASPPA------VAAETIEKATTALLKWQASKSNGQKPQLLNQDEDRFIYLILTLKKIPP 60

Query: 61  KGRTNPYKIPLPHPLRSE-SSELCLIIDDRTKSNLTKDDARKKIQSENIPISKVIKLSKL 120
           KGRTNP+KIPLPHPL +  +SELCLI+DDR  S+LT   A+ K++SENIP+SKV+ LSKL
Sbjct: 61  KGRTNPHKIPLPHPLHTPPNSELCLIVDDRPNSHLTSQAAKTKVKSENIPVSKVLSLSKL 120

Query: 121 KSDYRPFEAKRKLCDSYDMFFADDRVIPMLPSLLGKHFFKKKKIPVPLNLRHKNWKEQIE 180
           KS++RPFEAKRKLCDSYD F AD R++P+LP LLGKHFFKK+KIPV ++L HKNWKEQI+
Sbjct: 121 KSNFRPFEAKRKLCDSYDFFLADKRIVPLLPKLLGKHFFKKRKIPVAVDLGHKNWKEQID 180

Query: 181 KSCSSGLLYLRRGTCSVVKVAKTSMEVEEIVNNVIAAIDGIAEIVPKKWSNVQSFHLKVL 240
           ++C S LLYLR GTCSVV+V K SME E+IV NV+AAIDG+ E+VPKK + V+S HLK+L
Sbjct: 181 RACGSALLYLRTGTCSVVRVGKLSMEKEQIVENVVAAIDGVVELVPKKLAGVRSLHLKLL 240

Query: 241 ESIALPLYQTVPELKMKIEAAVRGKEEETNKEIADAGKSPTPVKVNNKKEKKLGKKKGRI 300
           ES+ALP+YQ VP++++KIE  +  KE E  KE  ++G      +V   ++KK+G KKGRI
Sbjct: 241 ESLALPVYQAVPDMRLKIEGVLE-KESEEVKEEEESG------RVEKGEKKKVG-KKGRI 300

Query: 301 HEVRYMDSNGLKLSEEEDEQDSDVDEVSENIEK------------GKKWSRVKKTKEELQ 360
           HEVRYMD +   L  EEDE D D DE  +  +K            GKK  + K  KE+  
Sbjct: 301 HEVRYMDGDVGGLL-EEDELDGDGDEDDDEGDKSADDELGGGEIVGKKRKKEKTKKEQAL 360

Query: 361 SELNVEKTSKKKKKKNGDEESSGKKVKKTKKLK 377
           S+LN EK  KK KK   ++E   KK K    +K
Sbjct: 361 SDLNGEKPLKKSKKVKKEDEEKQKKKKDRLNVK 378

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g03380 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL1D1_PONAB	2.0e-30	29.17	Ribosomal L1 domain-containing protein 1 OS=Pongo abelii GN=RSL1D1 PE=2 SV=2	[more]
RL1D1_HUMAN	2.0e-30	29.17	Ribosomal L1 domain-containing protein 1 OS=Homo sapiens GN=RSL1D1 PE=1 SV=3	[more]
RL1D1_BOVIN	5.7e-30	30.13	Ribosomal L1 domain-containing protein 1 OS=Bos taurus GN=RSL1D1 PE=2 SV=1	[more]
RL1D1_MOUSE	1.8e-28	30.22	Ribosomal L1 domain-containing protein 1 OS=Mus musculus GN=Rsl1d1 PE=1 SV=1	[more]
RL1DB_SCHPO	3.6e-24	31.77	Putative ribosome biogenesis protein C8F11.04 OS=Schizosaccharomyces pombe (stra...	[more]

BLAST of Cp4.1LG05g03380 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KML2_CUCSA	6.4e-145	77.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G154220 PE=4 SV=1	[more]
W9RT08_9ROSA	2.1e-100	58.89	Ribosomal L1 domain-containing protein 1 OS=Morus notabilis GN=L484_021401 PE=4 ...	[more]
F6HNZ4_VITVI	1.3e-97	55.73	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0142g00200 PE=4 SV=...	[more]
A0A067L5R8_JATCU	1.7e-97	56.49	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22354 PE=4 SV=1	[more]
A5BSP3_VITVI	4.9e-97	55.47	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020727 PE=4 SV=1	[more]

BLAST of Cp4.1LG05g03380 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G58660.1	3.5e-94	54.45	Ribosomal protein L1p/L10e family	[more]
AT2G42650.1	1.0e-85	49.73	Ribosomal protein L1p/L10e family	[more]
AT1G06380.1	8.1e-67	53.72	Ribosomal protein L1p/L10e family	[more]

BLAST of Cp4.1LG05g03380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449452340\|ref\|XP_004143917.1\|	9.1e-145	77.60	PREDICTED: ribosomal L1 domain-containing protein 1-like [Cucumis sativus]	[more]
gi\|659073785\|ref\|XP_008437252.1\|	1.7e-135	75.56	PREDICTED: ribosomal L1 domain-containing protein 1-like isoform X2 [Cucumis mel...	[more]
gi\|659073783\|ref\|XP_008437251.1\|	8.6e-135	73.78	PREDICTED: ribosomal L1 domain-containing protein 1-like isoform X1 [Cucumis mel...	[more]
gi\|703120740\|ref\|XP_010102167.1\|	3.1e-100	58.89	Ribosomal L1 domain-containing protein 1 [Morus notabilis]	[more]
gi\|225446867\|ref\|XP_002283850.1\|	1.9e-97	55.73	PREDICTED: ribosomal L1 domain-containing protein 1-like [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR023674	Ribosomal_L1-like
IPR016095	Ribosomal_L1_3-a/b-sand
IPR016094	Ribosomal protein L1, 2-layer alpha/beta-sandwich

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009165	nucleotide biosynthetic process
biological_process	GO:1901566	organonitrogen compound biosynthetic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG05g03380.1	Cp4.1LG05g03380.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016094	Ribosomal protein L1, 2-layer alpha/beta-sandwich	GENE3D	G3DSA:3.30.190.20		coord: 192..234 score: 4.
IPR016095	Ribosomal protein L1, 3-layer alpha/beta-sandwich	GENE3D	G3DSA:3.40.50.790		coord: 97..176 score: 6.5
IPR023674	Ribosomal protein L1-like	unknown	SSF56808	Ribosomal protein L1	coord: 14..243 score: 5.89
None	No IPR available	unknown	Coil	Coil	coord: 339..359 scor
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 9..263 score: 6.8
None	No IPR available	PANTHER	PTHR23105:SF31	RIBOSOMAL L1 DOMAIN-CONTAINING PROTEIN 1	coord: 9..263 score: 6.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG05g03380	Cucsa.303030	Cucumber (Gy14) v1	cgycpeB0792
Cp4.1LG05g03380	CmaCh02G014630	Cucurbita maxima (Rimu)	cmacpeB647
Cp4.1LG05g03380	CmoCh15G012850	Cucurbita moschata (Rifu)	cmocpeB292
Cp4.1LG05g03380	CmoCh02G014980	Cucurbita moschata (Rifu)	cmocpeB596
Cp4.1LG05g03380	Cla011459	Watermelon (97103) v1	cpewmB717
Cp4.1LG05g03380	Csa5G154220	Cucumber (Chinese Long) v2	cpecuB736
Cp4.1LG05g03380	MELO3C005664	Melon (DHL92) v3.5.1	cpemeB647
Cp4.1LG05g03380	ClCG01G002830	Watermelon (Charleston Gray)	cpewcgB639
Cp4.1LG05g03380	CSPI05G05540	Wild cucumber (PI 183967)	cpecpiB738
Cp4.1LG05g03380	Lsi09G002710	Bottle gourd (USVL1VR-Ls)	cpelsiB582
Cp4.1LG05g03380	MELO3C005664.2	Melon (DHL92) v3.6.1	cpemedB774
Cp4.1LG05g03380	CsaV3_5G002920	Cucumber (Chinese Long) v3	cpecucB0915
Cp4.1LG05g03380	Bhi12G000234	Wax gourd	cpewgoB0910
Cp4.1LG05g03380	CsGy5G002780	Cucumber (Gy14) v2	cgybcpeB691
Cp4.1LG05g03380	Carg16642	Silver-seed gourd	carcpeB1298
Cp4.1LG05g03380	Carg02520	Silver-seed gourd	carcpeB1282

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG05g03380	Cp4.1LG13g01600	Cucurbita pepo (Zucchini)	cpecpeB226

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG05g03380	Cucurbita maxima (Rimu)	cmacpeB329
Cp4.1LG05g03380	Watermelon (Charleston Gray)	cpewcgB680
Cp4.1LG05g03380	Cucumber (Gy14) v2	cgybcpeB427
Cp4.1LG05g03380	Melon (DHL92) v3.6.1	cpemedB831
Cp4.1LG05g03380	Cucumber (Chinese Long) v3	cpecucB0896
Cp4.1LG05g03380	Wax gourd	cpewgoB0929