Carg16487 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16487
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	sec-independent protein translocase protein TATA, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_130 : 934684 .. 940856 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAATCTCATCTGTAACTTTATCCTTCACATCTTCCATTCCCAGGCTTCCATCGTTTTCCCCTCCGTTTTCCTCCTCCAAATCATCCTTCTTCGCCAACAATGTCACCGCCAATTCCTTCAACAAAGGCGACCATAGCCATTCTTCGCTATTGCGAACCACCAGGTCCAGAAAGACGATGGATAGAGCTCATAAGGGTCTCACTTGTAACGCTCTGTTTGGACTTGGAGTGCCTGAGCTTGTTGTAATTGCCGGCGTCGCCGCTCTGGTTTTTGGCCCCAAGAAGTTGCCTGAAGTCGGGAAGAGTATTGGAAAAACGGTCAAGAGCTTCCAACAGGTATGTTTATGTGTGATTTTAATCAATTGGGTCAGTTTGGTTGCTCGGAGATTGTTAATTATTAGGGATTTGATATGGGGAAGATTTTTTTTCCACTGGATTTGGATAGTATGTGGTGTAGATGTTTGGAAATTGAGTATTTGATGATTGTTGTTTCGTATATTCGGATTAGGGAAGATTTTTACTGAATTTGAAATGAGATTGAATTGATGCAAAGTACTTTTTAGCTAACTAGAAAGCTTATCTACTTTTTCATGGGACTTGAACAACAATAGTTTCGAATTAGATGAAGCCTTGGTTTCGTGCCTCTGGATGTAAATAGAAATGCTTCACTTAATAACAGTCCTATCAAAATCTGTCGTCAGTTGTCACGCAGATGTATTGTCATACCTCTCATTTAGTTCATAACCCTTTTAGTTCATATTCCCATTTATTTGGTTCATGTATGAGAATTAGTATTGCTATACCTAGATAAAGGCTTGCTTAGCATTGCTTTGAGGTGTGGAGTCATTGTGTGATGTCCCATATTGGTTGGAGAGGAGAACAAAACACCCTTTATAAGGGTGTGGAAACCTTCCCCTAGTAGACACGTTTTAAAGCCTTGAGGGGAAGCCCAAAAGGGAAAGCTCAAAGAGGACAATATCTGCTCGCAGTGGATCTGGGCTGTTACAAATGGTATCATAGGCAGACACTGGACTATTTGCCGGCTGTTCCCCAAAGGGGGTAGACACGAGGCGGTGTGCCAGTAAGGACGCTGGCCCCAAAGGGGGTGGATTTGGTGGCGGTTCCACATCGATTGAAGAAAGGAACGAGTGTCAGTGAGGACGCTGGGCCCCGAAGGGGGGTAGATTGTGATGTCCCCACACTAGTTGGAGAGGAGAACAAAATACCCTTTATAAGGGTGTGGAAACCTTCTCCTAGCAAACGCGTTTTAAAGCCTTGAGGGGAAGCCTGAAAGGGAGAGCTCAAATAGGACAATATTTGCTAGTAGTGGATCTGGGCTGTTACACATTGTCATTTTGTATTTGCCTAGAGGCAATTGGGAGGAACTTTGTTGTAGTGTGAGAGTGTGAGAGATACACTTGTAAACACTTTGGTTATAGTGTGATTGACTACCACCTGTCGATGTAGGAGAATTTATTCTCTCCAATCCACGTAAATCTTTGTGTCTCTTTGTTTAATTTTCTGTTTGTGAGTGTGAGTGCGACCAATCTTGCTTTCGCTTAGGCTACAACAAATGGGTATCAAAACATTTTGGTTGTGGCGTTTGGGTACAACAAGTGGTATCATAGCATTAAAGGTTGTGGCATTACGGCACAACAAAGTCATTCCGAACATTTAAAATGAATCAAATAATACTTCTGTAACTGTCTACGAATCTGTTGTTCTGGCTCAGCTATCGTAATAAAAATGGACTTAAATAGGTGGGAACTCCACACTCTTTCTTGAGAGGACCTTTAGTATGTTGAATAAGAAAAGAAGAAAAGTTCTTGGAAATCTCAATGGCATGGTCGTAAGCTGTCATACAACCTCCCCTGTGTGCTTCTCACATAGTTTGTGTATTTTGTGCAAAAAAGTTGGAAGACCATACCCATCTGTTCTGTTCCTTCAGTCAGAAGCCTTGATGTTCTTGTGCTGAAGTGTTCAATCTGTTGGAGGGTCTTTTAGTGTCTATCACAGGGAACCTTTGCCAACCCCATCCTTTTAAGCGGAAAGTAAATGTGTTTTGGAATTATATTATCAAAGCGGTATGTGGGAGGTGTGGTTGGACACTGGTTGATGTAGTATGGTAAAGGGTGAAGTATGACAATTAGAATCTATAAAACAAAGGAGTGGGAAATAAAGATTCAACGAGATAGTAAACAAACGGAATCTTTAAGGGTCGGGAATCATAGATTCGACCAGTAAACCGGAGAAACATTATTCTTACTGGGTCGTGTTTCCATGATTTGTTTCTTAAAGAAGCAATTTCATTCATGAAGGAAATTTACAAAAACAGAGGACAAAAGCCTTGATCTGAAGCATTTACAATAAACATTTCCAATTGGACTAATTATTGTTGGTATGATATTCTTGATACATTGAAGAAGACGATTAAGGAGGATTTCATGTTGGATCCTGTCCATGTAGAAATGGGGAGATTTGTGCGTCTACGTTGGATGGTGACTGTAGGTGACTTTGCTATGAACTTCGAAGATTGGAATGAAAAAAAAAAAAATTATTAGCCAGCAGAGATGTTACTTTGTAGGTGAGTAAAAGTGTTACCTTGTTTATGGAGGTTTATTCATTAATAGGTGGATGAAGGAGGTCTCAAACCATTGGAGAATAATGTGCGTATTCTATTTCTCATGCCCGTGCTATGAAAAGAAGAAACAATGCAAAACGTTCACCCTATCTTTTCTCCAATCTTCGGGGGTAGTTGCTGCTGAAAGTCAGGAAGGTTGTTTGATACAATGCCACTACAAGTGTACACACGTTACGCTCATGGCAAAAAGAAGCAGTCATGTATGGAACCCATTAGTTGAATTGTCTTCCACCTTCATTTTGATTTTTTGGTTATTCCCTTGTTTTAGATTAAGAAAATTTCTCAAATATTGGCTAATCCCTACTCTCTCCCACAACAACACTGTTAAGGGCTCAAGTCTGGGATCGAGTTATGGATCTCTCGTAAGTGGAGGTAGACGGTGTTTGTGTGGGGGAAAAAGTAGAATTCTTCTTTCGACCTATTTTGAATAATTGTAAGGCTCAAATAGAGGGAACCTTAAACCTTTGAGTTAAAGTACTCAAGACTAAATTGGAAATTTTAGGTACCATCTTCATTGATGTTTATGACTATTTGTACAAGTTGTATGATAATCATTGCTACATCAATGGAACCATGACTCAATCATGGAGGATCATCCTCCTAGAACAAAGGAAATAACTAAAAATAGAAATGAAAGTGGAGTCCTTGCAACCATTGTTATATTAATAGAGCCATGACTCAATCATGGAGGATCATCTTCTACTAACACCAGTTCTTCAGGAAAGGAGGAGAAAAAGAGGAGGAAAATCAAATGGGGAAGGTTTCTCGTCTAAGACAAGAAATGAATAGGCACAAATTGAGGAATTTCATTCTGCCAAAGCTGAGCATCAAGTAATAGATTATGGGTCAAAACCATCGAATTTAAATTTGAATTTGAATTTGAATCATCAACTACTGTATTTAGTTGAACTTCATCCTCCCAACACTCCATCTTCCATTACTTGGTGAAGAAGAGGTTAATCACTGAATTTGAGAAATTATTCAAGCGTAAGTCACCATAAACAACTCCCAGAGGATCCAAGGAAACTATATCTCCAAGCTTAAAGGAAACGTTGCGACGTTTGTTGTAATAACGTTGAACCACAAAGGTTGCCGGAAAATTTTAAGAGTATCTTAGCAGTTACTCTTAGCTTGAATGTGAGCAGTCGAACATCAATGAAGTTAAGAGTATCTTAGCAGTTACTCTTAGCTTGAATGTGAGCAGTCGAACATCAATGAAGTTAAGAGTATCTTAGCAGTTACTAATTCAACCATCGAAGTAATAATCAAATGCCTCAAGAGTGTTTTTTTCGGTACTTAAACAGTTAGTTTTTAATCGAAATCCATCCCCCATATCCTTTAATTAACTTTTGATGACTATGCTTGTATGAAACCAGTTCTCAATCTTCAGATGTAAATCACCAACCAATTGCCATTTTCCCAACACACATAAATCAATGCTTTATCAGTTATTAAGGAATTGATCTGCACTTAAATTTTAAAGTATGCTTCTGCTGAAGTTTTGATATCCTTCCAAGAAATATGCACAAACAGGTGACTTACCACCAAGAAACTTTCAAAATCCATTCTAACCACTTCATGAGGTTTGTGTAAGACTATTGGATATTTCTGATGTTGTTTGTTAGTTGTTATCTTATTCATCTATTTAATGAATTGTATTGGATGTTCTTTTTATGTTTAAAGGTAGAAATTTACAATAAAGGTATCAAATATTCATAATTTGTCGAAATATATGCATATTTAAGGGGGGGAAATTAACATGTCGTGTCCTACTTTTTTGAAAATCGATGTAATGATATTTCCATGTCGTATAGTATCCAATGTCGTGTATCTATGTCTGTGCTTCTTAGCCCACCAATTAACCCCAACTCAAATGCCAAAAAATGCTGCTCTATAGGATGGAAGTTGGTCATTTCAAGTTATTTTTCGCCAAAATTGATGCTTGAGAGACCATTTTAAAGAATTAAAAAAATGACATTGAAACCGAAGATTCGGAAGTTGTGTCAATCACACATGTTTACACTAACCAATCGAATTTGTTAATTCAGTTTCGTTGTTGTCTTATTTTTTCAAATTTTGGATTAGACCCCTATTGCTCTTAGGCCAACCTTCGGAGCCATTTACGTTTGAGCATAACATTCTTTCTTATCAAATTGTTTATCCCTAAATAACGAATAGCCGGAATCATGGCATCATTTACCCAAAGTACATTGGAGCCCCCATCTCAGAGACAAAACAAACTAGAATTATGCCAATTATGATTATCTGAATTGAAGTCTAGCTTTCTTTCCTTCTTTCTTTCTCTTTTTGTAACATTATCAATTGCTCTGAAGTTTTATATTTCCCAAGGAATTTTCATTTCTTTCTAAACTTAGTAGTGTATATGTTATCGATATATTATGATTACAAAGATGACGTTTTTGTAATACCTTTATTATTTTAGAGTTATGAAAGGGAACTTCATATCTTGGACAAATTGAATATTCAAGCCTTGTAGTTTGTGTGCTACGTACCATATGAACCAACATTTTAAGTTTTCTGTTGTTATGAGTTCCCGCAGGGTTCACTAGTTATTGGAAGTGTCAAATGCACTTTTGACATGGACAAAAGAACTTTTGACTCGAAATGTTTAAGAAAAATCATGTAGGAGAGTAATATAAAATGCTTTTTGAAAAATTGGAAAGTGCCTTGAAATACTTTGTTGTAGAGCGTTATGGTCTATGTGCTTGATTGGGAATTCCTTCCAAAGTACTTTTAAGAATGCATAACCAATTTTACTTTACTTTTTTAAAACCATTTCCAAATACGCTTTTTAAGCATTTGTTAGTGAGTTAGAACATAATATGGGTAACGTAGGAGACATCTCTACTTTTCCCCTCGGGAATCCATAGAATTTACTGTTGCTTAGTTTTCAATTTACCTCTGATCATCAAATGAAATGTGAATAACCTGTCCTCCTCTCTTTGAAACAAGGGACGTTTCTGGTTCTGTCGGTGCTTGAAACAATTTAGTTTTCTCCATATTACTATATCTCTAGAGTCAATAATTTTATATGAGGAACTATTGAAGTCAATCACTTGCTGCCGTTAACTCTTTAGCTTTCTGTTGAGGTCTATTATGTGGAGGTATTCAAATTGGATCAATGATTGATTTCTAGGTTTCGTCGTAAACCTAATTGGTTACTTCTAATAGTTCAAGTGAATCAAGGCTAATAGTTCAAGTGAATCAAGGATAAAGTAGCTTCAAGTTTGTTTATGAAACATTTTTTCAATCTTTCTTATTGATTTTCAAGCTTGAGGAAAACTTCAATTGCTCAACGGTTAAAGAATCAGCTAAACGAAGTTATCTGCTTTTGAGTTTCCTAGTAGGACTTATGTTTCTAGTATCATTGCAGGCGGCTAAGGAGTTCGAGTCCGAGCTGAAGAAAGAGCCCGAGTCAATCGGAGAGACCGCAGTAGAAAAGCCTACATCAGTAGATGATGAGGAGAAGCAAGATTTGAAGGTATCAAACCAAAAGGAGAGTGTATGA

mRNA sequence

ATGGTAATCTCATCTGTAACTTTATCCTTCACATCTTCCATTCCCAGGCTTCCATCGTTTTCCCCTCCGTTTTCCTCCTCCAAATCATCCTTCTTCGCCAACAATGTCACCGCCAATTCCTTCAACAAAGGCGACCATAGCCATTCTTCGCTATTGCGAACCACCAGGTCCAGAAAGACGATGGATAGAGCTCATAAGGGTCTCACTTGTAACGCTCTGTTTGGACTTGGAGTGCCTGAGCTTGTTGTAATTGCCGGCGTCGCCGCTCTGGTTTTTGGCCCCAAGAAGTTGCCTGAAGTCGGGAAGAGTATTGGAAAAACGGTCAAGAGCTTCCAACAGGCGGCTAAGGAGTTCGAGTCCGAGCTGAAGAAAGAGCCCGAGTCAATCGGAGAGACCGCAGTAGAAAAGCCTACATCAGTAGATGATGAGGAGAAGCAAGATTTGAAGGTATCAAACCAAAAGGAGAGTGTATGA

Coding sequence (CDS)

ATGGTAATCTCATCTGTAACTTTATCCTTCACATCTTCCATTCCCAGGCTTCCATCGTTTTCCCCTCCGTTTTCCTCCTCCAAATCATCCTTCTTCGCCAACAATGTCACCGCCAATTCCTTCAACAAAGGCGACCATAGCCATTCTTCGCTATTGCGAACCACCAGGTCCAGAAAGACGATGGATAGAGCTCATAAGGGTCTCACTTGTAACGCTCTGTTTGGACTTGGAGTGCCTGAGCTTGTTGTAATTGCCGGCGTCGCCGCTCTGGTTTTTGGCCCCAAGAAGTTGCCTGAAGTCGGGAAGAGTATTGGAAAAACGGTCAAGAGCTTCCAACAGGCGGCTAAGGAGTTCGAGTCCGAGCTGAAGAAAGAGCCCGAGTCAATCGGAGAGACCGCAGTAGAAAAGCCTACATCAGTAGATGATGAGGAGAAGCAAGATTTGAAGGTATCAAACCAAAAGGAGAGTGTATGA

Protein sequence

MVISSVTLSFTSSIPRLPSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRKTMDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV

Homology

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BLAST of Carg16487 vs. NCBI nr
Match: XP_023529222.1 (sec-independent protein translocase protein TATA, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 282.0 bits (720), Expect = 1.3e-72
Identity = 154/157 (98.09%), Postives = 154/157 (98.09%), Query Frame = 0


Query: 1   MVISSVTLSFTSSIPRLPSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRKT 60
           MVISS TLSFTSSIPRLPSFSPPFSSSKSSFFANN TANSFNKGDHSHS LLRTTRSRKT
Sbjct: 1   MVISSATLSFTSSIPRLPSFSPPFSSSKSSFFANNATANSFNKGDHSHSLLLRTTRSRKT 60

Query: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120
           MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES
Sbjct: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120

Query: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV
Sbjct: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 157

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BLAST of Carg16487 vs. NCBI nr
Match: XP_022969040.1 (sec-independent protein translocase protein TATA, chloroplastic [Cucurbita maxima])

HSP 1 Score: 280.4 bits (716), Expect = 3.7e-72
Identity = 153/157 (97.45%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 1   MVISSVTLSFTSSIPRLPSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRKT 60
           MVISS TLSFTSSIPRLPSFSPP SSSKSSFFANN TANSFNKGDHSHSSLLRTTRSRKT
Sbjct: 1   MVISSATLSFTSSIPRLPSFSPPLSSSKSSFFANNATANSFNKGDHSHSSLLRTTRSRKT 60

Query: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120
           MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES
Sbjct: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120

Query: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           ELKKEPESIGETAVEKPTSVDDEEKQDLK SNQKESV
Sbjct: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKASNQKESV 157

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BLAST of Carg16487 vs. NCBI nr
Match: XP_022932561.1 (sec-independent protein translocase protein TATA, chloroplastic [Cucurbita moschata])

HSP 1 Score: 279.6 bits (714), Expect = 6.3e-72
Identity = 152/157 (96.82%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 1   MVISSVTLSFTSSIPRLPSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRKT 60
           MVISS TLSFTSSIPRLPSFSPPFSSSKSSFFANN TANSFNKGDHSHS LLRTTRSRKT
Sbjct: 1   MVISSATLSFTSSIPRLPSFSPPFSSSKSSFFANNATANSFNKGDHSHSLLLRTTRSRKT 60

Query: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120
           MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES
Sbjct: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120

Query: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           ELKKEPESIGETAVEKP S+DDEEKQDLKVSNQKESV
Sbjct: 121 ELKKEPESIGETAVEKPASIDDEEKQDLKVSNQKESV 157

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BLAST of Carg16487 vs. NCBI nr
Match: XP_008450744.1 (PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Cucumis melo] >XP_008450746.1 PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Cucumis melo])

HSP 1 Score: 222.6 bits (566), Expect = 9.2e-55
Identity = 126/158 (79.75%), Postives = 136/158 (86.08%), Query Frame = 0


Query: 1   MVISSVTLSFTSSIPRL-PSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRK 60
           MVIS+ TLSFTSSIP+L PS SP FSSSKS+FFANN T + F  GDH+HSSLLR T  R 
Sbjct: 1   MVISTPTLSFTSSIPKLPPSLSPSFSSSKSAFFANNATVSFFTNGDHNHSSLLRLTSFRT 60

Query: 61  TMDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120
           T    HKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE
Sbjct: 61  TTKTTHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120

Query: 121 SELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           SELKKEPE   ET+VEKPTS + E++QDLKVSNQKE+V
Sbjct: 121 SELKKEPEPTEETSVEKPTSTEAEKRQDLKVSNQKETV 158

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BLAST of Carg16487 vs. NCBI nr
Match: XP_004135654.1 (PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Cucumis sativus] >KGN66148.1 hypothetical protein Csa_1G573670 [Cucumis sativus])

HSP 1 Score: 215.3 bits (547), Expect = 1.5e-52
Identity = 124/158 (78.48%), Postives = 132/158 (83.54%), Query Frame = 0


Query: 1   MVISSVTLSFTSSIPRL-PSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRK 60
           MVISS TLSFTSSIP+L PS S    SSKS+FFANN T + F  GDH+HSSLLR T  R 
Sbjct: 1   MVISSPTLSFTSSIPKLPPSLSXXXXSSKSAFFANNATTSFFTYGDHNHSSLLRLTSFRT 60

Query: 61  TMDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120
           T    HKG TCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE
Sbjct: 61  TTKTTHKGFTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120

Query: 121 SELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           SELKKEPE   ET+VEKPTS + EE+QDLKVSNQKE+V
Sbjct: 121 SELKKEPEPTEETSVEKPTSTEAEERQDLKVSNQKETV 158

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BLAST of Carg16487 vs. TAIR10
Match: AT5G28750.1 (Bacterial sec-independent translocation protein mttA/Hcf106)

HSP 1 Score: 116.3 bits (290), Expect = 1.7e-26
Identity = 74/117 (63.25%), Postives = 84/117 (71.79%), Query Frame = 0


Query: 18  PSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRKTMDRAHKGLTCNALFGLG 77
           P   P  SSS+SSFF+N  T  +      S  ++ R  R   T     K LTCNALFGLG
Sbjct: 13  PVSLPLLSSSRSSFFSNCFTVTT-RPNTRSLVAIGRRIRQEPT----RKPLTCNALFGLG 72

Query: 78  VPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEP-ESIGETA 134
           VPEL VIAGVAAL+FGPKKLPE+GKSIGKTVKSFQQAAKEFESELK EP ES+ E++
Sbjct: 73  VPELAVIAGVAALLFGPKKLPEIGKSIGKTVKSFQQAAKEFESELKTEPEESVAESS 124

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BLAST of Carg16487 vs. TAIR10
Match: AT5G52440.1 (Bacterial sec-independent translocation protein mttA/Hcf106)

HSP 1 Score: 52.8 bits (125), Expect = 2.3e-07
Identity = 28/61 (45.90%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 72  ALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSF-------QQAAKEFESELKK 126
           +LFG+G PE +VI  VA LVFGPK L EV +++GKT+++F       Q  +++F+S L++
Sbjct: 85  SLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRTFQPTIRELQDVSRDFKSTLER 144

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BLAST of Carg16487 vs. Swiss-Prot
Match: sp|Q9XH46|TATA_PEA (Sec-independent protein translocase protein TATA, chloroplastic OS=Pisum sativum OX=3888 GN=TATA PE=1 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.5e-27
Identity = 88/155 (56.77%), Postives = 106/155 (68.39%), Query Frame = 0


Query: 6   VTLSFTSS--IP-RLPSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRKTMD 65
           +TLS +SS  IP RLP+         SS ++N     SF   + + SSLL      KT  
Sbjct: 3   ITLSISSSSVIPTRLPN---------SSCYSN----LSFLSSNSNTSSLLLKKARIKT-- 62

Query: 66  RAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESEL 125
           R  KG TCNA FGLGVPELVVIAGVAALVFGPKKLPEVG+SIG+TVKSFQQAAKEFE+EL
Sbjct: 63  RTTKGFTCNAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFETEL 122

Query: 126 KKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           KKEP    E +V       ++EKQ++KVS+ K++V
Sbjct: 123 KKEPNPTEEISV-----ASEQEKQEIKVSSTKDNV 137

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BLAST of Carg16487 vs. Swiss-Prot
Match: sp|Q9LKU2|TATA_ARATH (Sec-independent protein translocase protein TATA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TATA PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.0e-25
Identity = 74/117 (63.25%), Postives = 84/117 (71.79%), Query Frame = 0


Query: 18  PSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRKTMDRAHKGLTCNALFGLG 77
           P   P  SSS+SSFF+N  T  +      S  ++ R  R   T     K LTCNALFGLG
Sbjct: 13  PVSLPLLSSSRSSFFSNCFTVTT-RPNTRSLVAIGRRIRQEPT----RKPLTCNALFGLG 72

Query: 78  VPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEP-ESIGETA 134
           VPEL VIAGVAAL+FGPKKLPE+GKSIGKTVKSFQQAAKEFESELK EP ES+ E++
Sbjct: 73  VPELAVIAGVAALLFGPKKLPEIGKSIGKTVKSFQQAAKEFESELKTEPEESVAESS 124

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BLAST of Carg16487 vs. Swiss-Prot
Match: sp|Q9XFJ8|TATA_MAIZE (Sec-independent protein translocase protein TATA, chloroplastic OS=Zea mays OX=4577 GN=TATA PE=1 SV=2)

HSP 1 Score: 106.3 bits (264), Expect = 3.1e-22
Identity = 61/90 (67.78%), Postives = 71/90 (78.89%), Query Frame = 0


Query: 68  LTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEP- 127
           L C  LFGLGVPEL VIAGVAALVFGPK+LPE+G+SIGKTVKSFQQAAKEFE+ELKKEP 
Sbjct: 80  LGCKCLFGLGVPELAVIAGVAALVFGPKQLPEIGRSIGKTVKSFQQAAKEFETELKKEPG 139

Query: 128 ESIGETAVEKPTSVDDEEKQDLKVSNQKES 157
           E   +     PT+V   E++ L+ S+ KES
Sbjct: 140 EGGDQPPPATPTAVSGGEEKGLEASSSKES 169

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BLAST of Carg16487 vs. Swiss-Prot
Match: sp|Q75GK3|TATA_ORYSJ (Sec-independent protein translocase protein TATA, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=TATA PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.3e-19
Identity = 48/54 (88.89%), Postives = 52/54 (96.30%), Query Frame = 0


Query: 70  CNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELK 124
           C  LFGLGVPELVVIAGVAALVFGPK+LPE+G+SIGKTVKSFQQAAKEFE+ELK
Sbjct: 81  CKCLFGLGVPELVVIAGVAALVFGPKQLPEIGRSIGKTVKSFQQAAKEFETELK 134

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BLAST of Carg16487 vs. Swiss-Prot
Match: sp|Q31RR1|TATA_SYNE7 (Sec-independent protein translocase protein TatA OS=Synechococcus elongatus (strain PCC 7942) OX=1140 GN=tatA PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-12
Identity = 41/87 (47.13%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 74  FGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKE----PESI 133
           FG+G+PE++VI  +A LVFGPKKLPE+G+S+GK ++ FQ A++EFESE+K+E    P + 
Sbjct: 4   FGIGLPEMLVILAIALLVFGPKKLPEIGRSLGKALRGFQDASREFESEIKREIDRTPATP 63

Query: 134 GETAVEKPTSVDDEEKQDLKVSNQKES 157
            E  VE P  +D    + + V  Q E+
Sbjct: 64  AEATVEPPV-LDSAPTEAVTVEKQTET 89

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BLAST of Carg16487 vs. TrEMBL
Match: tr|A0A1S3BPB0|A0A1S3BPB0_CUCME (sec-independent protein translocase protein TATA, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492233 PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 6.1e-55
Identity = 126/158 (79.75%), Postives = 136/158 (86.08%), Query Frame = 0


Query: 1   MVISSVTLSFTSSIPRL-PSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRK 60
           MVIS+ TLSFTSSIP+L PS SP FSSSKS+FFANN T + F  GDH+HSSLLR T  R 
Sbjct: 1   MVISTPTLSFTSSIPKLPPSLSPSFSSSKSAFFANNATVSFFTNGDHNHSSLLRLTSFRT 60

Query: 61  TMDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120
           T    HKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE
Sbjct: 61  TTKTTHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120

Query: 121 SELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           SELKKEPE   ET+VEKPTS + E++QDLKVSNQKE+V
Sbjct: 121 SELKKEPEPTEETSVEKPTSTEAEKRQDLKVSNQKETV 158

[Close]

BLAST of Carg16487 vs. TrEMBL
Match: tr|A0A0A0LWL1|A0A0A0LWL1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573670 PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 9.7e-53
Identity = 124/158 (78.48%), Postives = 132/158 (83.54%), Query Frame = 0


Query: 1   MVISSVTLSFTSSIPRL-PSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRK 60
           MVISS TLSFTSSIP+L PS S    SSKS+FFANN T + F  GDH+HSSLLR T  R 
Sbjct: 1   MVISSPTLSFTSSIPKLPPSLSXXXXSSKSAFFANNATTSFFTYGDHNHSSLLRLTSFRT 60

Query: 61  TMDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120
           T    HKG TCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE
Sbjct: 61  TTKTTHKGFTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120

Query: 121 SELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           SELKKEPE   ET+VEKPTS + EE+QDLKVSNQKE+V
Sbjct: 121 SELKKEPEPTEETSVEKPTSTEAEERQDLKVSNQKETV 158

[Close]

BLAST of Carg16487 vs. TrEMBL
Match: tr|A0A2P4NCQ6|A0A2P4NCQ6_QUESU (Sec-independent protein translocase protein tata, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_61474 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.4e-43
Identity = 112/159 (70.44%), Postives = 130/159 (81.76%), Query Frame = 0


Query: 1   MVISSVTLS-FTSSIPRLPSFSPPFSSSKSSFFANNVTANSFNKGD-HSHSSLLRTTRSR 60
           M ISS+ LS  ++SIPR+   S PFSSSKS+FF +N T   FNK   +S++ +L    +R
Sbjct: 1   MEISSICLSPVSTSIPRVTPPSLPFSSSKSTFFTSNATLTLFNKTKANSNTLVLGGAATR 60

Query: 61  KTMDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEF 120
             ++RA KGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEF
Sbjct: 61  IRVERARKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEF 120

Query: 121 ESELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           ESELKKEP+SI E  VEKPT+V +EEKQD+KVS+ KESV
Sbjct: 121 ESELKKEPDSITENPVEKPTAVSEEEKQDIKVSSTKESV 159

[Close]

BLAST of Carg16487 vs. TrEMBL
Match: tr|A0A2I4FF25|A0A2I4FF25_9ROSI (sec-independent protein translocase protein TATA, chloroplastic OS=Juglans regia OX=51240 GN=LOC108998206 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 6.5e-41
Identity = 106/157 (67.52%), Postives = 121/157 (77.07%), Query Frame = 0


Query: 1   MVISSVTLSFTSSIPRLPSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRKT 60
           M +SSVTL F SS  R+P  S PFSSS S+F  N  T+   NK  H  ++L+  +R+R  
Sbjct: 1   MEVSSVTLCF-SSTSRMPPPSLPFSSSNSTFLTNFATSTFLNKTKHKSNALV-ASRTRTR 60

Query: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120
            D A KGLTCNALFGLGVPELVVIAGV ALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES
Sbjct: 61  TDPAKKGLTCNALFGLGVPELVVIAGVVALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120

Query: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           ELKKEP+S  E   EKP S+ +EEKQD+KVS+ KE+V
Sbjct: 121 ELKKEPDSTIEAPTEKPASLSEEEKQDIKVSSSKENV 155

[Close]

BLAST of Carg16487 vs. TrEMBL
Match: tr|A9P9F0|A9P9F0_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 PE=2 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 5.7e-37
Identity = 105/158 (66.46%), Postives = 122/158 (77.22%), Query Frame = 0


Query: 1   MVISSVTLSFTSSIPRLPSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSL-LRTTRSRK 60
           M ISS+TLSF    P L     PFSSS+S+FF  N TA  FNK   S++SL L  TRSR 
Sbjct: 1   MEISSITLSFPKPPPCL-----PFSSSQSTFF--NTTA-FFNKSSKSYNSLVLGKTRSRS 60

Query: 61  TMDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120
              RA KGLTCNALFGLGVPELVVIAGVA L+FGPK+LPEVG+SIGKTVKSFQQAAKEFE
Sbjct: 61  --QRAKKGLTCNALFGLGVPELVVIAGVATLLFGPKQLPEVGRSIGKTVKSFQQAAKEFE 120

Query: 121 SELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           SELKKEP+S  +T  E+PT++ +E+K D +VS+ KESV
Sbjct: 121 SELKKEPDSTSDTPGEQPTTISEEKKHDSEVSSSKESV 148

The following BLAST results are available for this feature:

BLAST of Carg16487 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023529222.1	1.3e-72	98.09	sec-independent protein translocase protein TATA, chloroplastic [Cucurbita pepo ...	[more]
XP_022969040.1	3.7e-72	97.45	sec-independent protein translocase protein TATA, chloroplastic [Cucurbita maxim...	[more]
XP_022932561.1	6.3e-72	96.82	sec-independent protein translocase protein TATA, chloroplastic [Cucurbita mosch...	[more]
XP_008450744.1	9.2e-55	79.75	PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Cucu...	[more]
XP_004135654.1	1.5e-52	78.48	PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Cucu...	[more]

BLAST of Carg16487 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G28750.1	1.7e-26	63.25	Bacterial sec-independent translocation protein mttA/Hcf106	[more]
AT5G52440.1	2.3e-07	45.90	Bacterial sec-independent translocation protein mttA/Hcf106	[more]

BLAST of Carg16487 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9XH46\|TATA_PEA	5.5e-27	56.77	Sec-independent protein translocase protein TATA, chloroplastic OS=Pisum sativum...	[more]
sp\|Q9LKU2\|TATA_ARATH	3.0e-25	63.25	Sec-independent protein translocase protein TATA, chloroplastic OS=Arabidopsis t...	[more]
sp\|Q9XFJ8\|TATA_MAIZE	3.1e-22	67.78	Sec-independent protein translocase protein TATA, chloroplastic OS=Zea mays OX=4...	[more]
sp\|Q75GK3\|TATA_ORYSJ	3.3e-19	88.89	Sec-independent protein translocase protein TATA, chloroplastic OS=Oryza sativa ...	[more]
sp\|Q31RR1\|TATA_SYNE7	1.7e-12	47.13	Sec-independent protein translocase protein TatA OS=Synechococcus elongatus (str...	[more]

BLAST of Carg16487 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BPB0\|A0A1S3BPB0_CUCME	6.1e-55	79.75	sec-independent protein translocase protein TATA, chloroplastic OS=Cucumis melo ...	[more]
tr\|A0A0A0LWL1\|A0A0A0LWL1_CUCSA	9.7e-53	78.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573670 PE=3 SV=1	[more]
tr\|A0A2P4NCQ6\|A0A2P4NCQ6_QUESU	1.4e-43	70.44	Sec-independent protein translocase protein tata, chloroplastic OS=Quercus suber...	[more]
tr\|A0A2I4FF25\|A0A2I4FF25_9ROSI	6.5e-41	67.52	sec-independent protein translocase protein TATA, chloroplastic OS=Juglans regia...	[more]
tr\|A9P9F0\|A9P9F0_POPTR	5.7e-37	66.46	Uncharacterized protein OS=Populus trichocarpa OX=3694 PE=2 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005886	plasma membrane
GO:0016021	integral component of membrane
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0008565	protein transporter activity

Vocabulary: **Biological Process**
Term	Definition
GO:0015031	protein transport
GO:0009306	protein secretion

Vocabulary: **INTERPRO**
Term	Definition
IPR006312	TatA/E
IPR003369	TatA/B/E
IPR003998	TatB-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009306	protein secretion
biological_process	GO:0015031	protein transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0008565	protein transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16487-RA	Carg16487-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003998	Twin-arginine translocation protein TatB-like	PRINTS	PR01506	TATBPROTEIN	coord: 73..93 score: 35.53 coord: 93..112 score: 27.65
IPR003369	Sec-independent protein translocase protein TatA/B/E	PFAM	PF02416	MttA_Hcf106	coord: 76..125 e-value: 7.5E-19 score: 66.7
IPR006312	Sec-independent protein translocase protein TatA/E	TIGRFAM	TIGR01411	TIGR01411	coord: 75..121 e-value: 5.0E-20 score: 68.8
IPR006312	Sec-independent protein translocase protein TatA/E	HAMAP	MF_00236	TatA_E	coord: 73..156 score: 18.54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..157
None	No IPR available	PANTHER	PTHR33162	FAMILY NOT NAMED	coord: 14..137

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16487	Cla011293	Watermelon (97103) v1	carwmB0911
Carg16487	Csa1G573670	Cucumber (Chinese Long) v2	carcuB0928
Carg16487	MELO3C015378	Melon (DHL92) v3.5.1	carmeB0897
Carg16487	ClCG03G016400	Watermelon (Charleston Gray)	carwcgB0891
Carg16487	CSPI01G27260	Wild cucumber (PI 183967)	carcpiB0950
Carg16487	Cucsa.289100	Cucumber (Gy14) v1	carcgyB1030
Carg16487	CmaCh11G009890	Cucurbita maxima (Rimu)	carcmaB1252
Carg16487	CmoCh11G010070	Cucurbita moschata (Rifu)	carcmoB1222
Carg16487	Lsi06G001900	Bottle gourd (USVL1VR-Ls)	carlsiB831
Carg16487	Cp4.1LG04g01840	Cucurbita pepo (Zucchini)	carcpeB1261
Carg16487	CsGy1G026470	Cucumber (Gy14) v2	carcgybB0900
Carg16487	MELO3C015378.2	Melon (DHL92) v3.6.1	carmedB0905
Carg16487	CsaV3_1G039570	Cucumber (Chinese Long) v3	carcucB0950

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16487	Watermelon (Charleston Gray)	carwcgB0893
Carg16487	Watermelon (97103) v2	carwmbB0957
Carg16487	Watermelon (97103) v2	carwmbB0958
Carg16487	Wax gourd	carwgoB1056
Carg16487	Wax gourd	carwgoB1057
Carg16487	Cucumber (Gy14) v2	carcgybB0899
Carg16487	Wild cucumber (PI 183967)	carcpiB0948
Carg16487	Cucumber (Chinese Long) v2	carcuB0927
Carg16487	Cucumber (Chinese Long) v3	carcucB0949
Carg16487	Bottle gourd (USVL1VR-Ls)	carlsiB830
Carg16487	Melon (DHL92) v3.5.1	carmeB0896
Carg16487	Melon (DHL92) v3.6.1	carmedB0904