MELO3C015378.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015378.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	sec-independent protein translocase protein TATA, chloroplastic
Location	chr02 : 1199589 .. 1203234 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCCCACGTGAAAAAGATTGATACAAAAAATTTCAAAGCCCCCAAATAAAATTAATCAAAATGAGATGAGAAGCATTCCCTAAACCGATAAAGATTCCCAAATTTCCAATCAAAGATTTTTCTCCTCAACGACGAAGGCGACCATGGTGATTTCAACTCCAACTCTATCCTTTACTTCTTCCATTCCAAAGCTTCCTCCATCTCTTTCTCCTTCATTTTCCTCTTCTAAATCCGCCTTCTTCGCCAACAATGCCACCGTCAGTTTCTTCACCAACGGTGACCATAACCATTCTTCGCTACTGCGTTTGACCAGCTTCAGAACTACCACCAAAACAACTCATAAGGGTCTCACTTGTAATGCTTTGTTTGGTCTTGGAGTGCCTGAACTTGTTGTAATCGCTGGTGTTGCAGCTTTGGTTTTTGGGCCTAAGAAGTTGCCTGAAGTTGGGAAGAGTATTGGGAAAACAGTCAAGAGCTTCCAACAGGTATGTTTGTGGTTTTAGTTGATTGGGTCAGATTGGATGCTCTGGAATTGTGTAATTGTTTGGGATTTGAAATGGGGATTCGGGGAAATGAAGTTTTTTTTTTTTTTTAACTGAATTTGGATTGTGTGCGCGATGTTTGAGTTTCACTTGGCTTGTCCACTAATACAGAAAAGTAATTGATAATTGTTGTTTTGGGTTTATTTTGACTAACTAGTTAGCAAAATTAACCCTTCTTTTCGTGGCTACATGAGAAGCAACAATCTTGAATTAGTTGAGTTGTCGATTTATTAGCTTTGTCCAAAGTATTACTGAAAGTATTCCCTAAGATTGAGCTGTCTATGAATTTATTTTTCTGGCTGGGCGACTGTGTGGGAGAATGAGCTTTATTAAAGTTCAAATTTTAGAATTTTACGTCATTCTAATATGTAAAATCTTCCAGCCTTGCGAGTTCTGTTCTTTGTCCTTGATCCTTTGTTGTAGTTTTCTTCAACTAATGCATTCTGAAAGTACTTTTGTTAATTGAAGTTTTGCGAAGTTTTGGATGTTTTGCTTTTGGATCATGAATAATCCGATCTAGTCATCAGTCATGTTAGACTAAATGGTATATGTAATATTTCCAGGATCCTTACTGGATATCTCTCTGTTGAATATTGTTTCTTATGTTTTTACGAATGCTTTTCAATTCATTTATTCTTAGTAGGTGGTGTTTTTAATGGACGTGAAATCTTGTTTCCTTTTCCTTTGTCTTTAAACTACGCGGGAGTCTTTTGCTGATATTTCCAGAGTGGAAAAATGGGATATGCATTCTCCAATTAAGAAACGTCAACAAACTCTTAATCTTGAGAAAATTTCTTTTCTACCTTCACCCTTTCTTTAGTATTGCAAATGGCAGTAGAGATCTTCATAGGGCGGGGCCCCATCCTGTCCTCAGGGAATAGATGCCCTGGATGGAATGCCCCCAAGTCATGATCGTAGTCCCTGCGTCTTCTCATTGATGTCGTTCGAGGGCTTCTCTCTCCAAACTTAGAACTGTAAAGTCAAGCTCATTCTTCTCTGAACGGCTTGTTCGTGACAAAATATCTCTTTACTTGATGTAGCTACCCGATGGGTAATGGGTCTTCTCGTCTTCCCCCTCAAAGATTAGTACCTCAGGTTTCCTCAATTCTATATTGAATAACAGCACCTCACAAGTGCTAGGAGCGTTCTCTGTTTCATTGGTATGCCTTTTCTCTCTCATTGCACTTTTAGCCGGTCGTTTGCCTCTATTCATGTGTGTCTGTTCAAGGGAGCCTGAACTACCTCCATCTCTGGTTTCCCCCTTCCTTCTAGGCTACGCCTTTTATCCTCACATTATTTACTGTTCCAATCTCTAGCCTAACTCTTCCTGGATTCGGGTGAATTCATTTGCTATCATGGCTTCTACTCCATGTTCGATTTGGATAAACTTTTGATCCATCTTTTGAATCTTCGCAATATACCTAGGCCTGGTAGTATGTGTGGTACTTACTACATGAACATTAACGTTCTTTGATTATGCTGTTGTTATGGTATGATTTCCCATCGTATTCAATACAATTTAAAATCTTCGTTAATTTCCATTTTCTTTGATGAGAAATCAAGCTGGATGAAAATATGAAAAAAAATACTGAAAAAGAGAAAAGAAATGGAGTACATAAAAAAGACAACGCAACTAACAAAAGAGGAGCATCAAATCTAGAGTATATAGAATGGGCTTGAGCCCGACTAAAGGTTATTGTGAATTTCATTAATTCATCTATGTTTAGGAATGACAAACTTTTTTATCTTTCTAATTGAACAGTGTTTGGGGCCTTGGGGTAAGAGATTTGAACTTCTGATCTCTCAATCAAGTGTAAATATCTAAACTAGTTGATAAGTTGGCGACGGCCACTTTTGTCATAGAAAAAATACCTCCTACGTAATAGTATCATGCTTGGGAGCATGTAAAAATGTTCTTAGAAAAAAGCAAAGCACCTTGAAGTAGGTTGTTATAGAGTGTGTTTAGTCTAAACGGCTGAATGCAAAGTACTTTTAAGAATGTAGAACTAAACATTTAACTGATTTCTTTTAAACAATTTTAAAGTAATGTAGCTAAAACTACTTTAAAAGCACTCTGAAACATAAATTGAGAGTCTAAGACCGTCACATTTGTTAGTGTTGAGTTAGAGAAAGTTATTGTGGAATGAGGATACAGTAATCTTCAGTTCATACTTCATAGTTCGTTGTAGATGATTAATTAATGTATGGGTCTATTTCTAAGAAATCAACAACTCCGTCAATTATACACCCTTAAAACAGCTACCTAGTATTTTGTTGATGAAGCATGTTTTCTGTCTTTTTTCATCAATAGAGTCAAGTATTAGGAAAACTTCAATTGCTCAATTTGTTAGAAAAATCAGCAAAACGACGCTTCAATATTTCAACTTTGGTAGTTGGAGGAATAATGTTGCTAATATTATTGCAGGCAGCTAAGGAGTTCGAGTCCGAGCTGAAGAAAGAACCTGAGCCAACCGAAGAGACTTCAGTAGAAAAGCCTACATCAACGGAAGCAGAGAAGAGACAAGATTTGAAGGTATCAAACCAAAAAGAGACTGTATGAAGCGGTAGGTAGTCCATCATTTCCACATCTACATTTATCATTGTGTTTTATGTATTATGAGAATCAGTTACTGGAATCTGAAGATCACTTAATGAAGAAAATTAGTTTTCCAGTGCTGGACTCTGATGGATACCATAATCCACTCTAATTAGATCAAAAGGAAATATAAGCTATAACCTCAACTAGGCCGATCTGAGAGGGCAACTTCTCTCCCTACCAACAACATAATATCTGAACTTCCCTTTACAACATCCTTTTTACCCTTCATTTTTCTCTTTTTCACGACCGATGCAAATTTCATTTTTCATTACTGCACGTTCTAATATATTACATAGGATACTATCAACAGAGAATTTATATGCTTGTTGAATACTTGAATTCAAAACTCTTCCTCCCTGGTTATTAGCTTTTAGAATTTTCATGCCAAGTCTGAATTCTGCTATCTCTGAGCTATCCTTTTTTGGATGGTGGAGATTATTTGGTTATTGATTTGAATTCCTGACTTGGTTGAAGATTTGGAAAATACCAATTTCATTTCAAAGT

mRNA sequence

AATCCCACGTGAAAAAGATTGATACAAAAAATTTCAAAGCCCCCAAATAAAATTAATCAAAATGAGATGAGAAGCATTCCCTAAACCGATAAAGATTCCCAAATTTCCAATCAAAGATTTTTCTCCTCAACGACGAAGGCGACCATGGTGATTTCAACTCCAACTCTATCCTTTACTTCTTCCATTCCAAAGCTTCCTCCATCTCTTTCTCCTTCATTTTCCTCTTCTAAATCCGCCTTCTTCGCCAACAATGCCACCGTCAGTTTCTTCACCAACGGTGACCATAACCATTCTTCGCTACTGCGTTTGACCAGCTTCAGAACTACCACCAAAACAACTCATAAGGGTCTCACTTGTAATGCTTTGTTTGGTCTTGGAGTGCCTGAACTTGTTGTAATCGCTGGTGTTGCAGCTTTGGTTTTTGGGCCTAAGAAGTTGCCTGAAGTTGGGAAGAGTATTGGGAAAACAGTCAAGAGCTTCCAACAGGCAGCTAAGGAGTTCGAGTCCGAGCTGAAGAAAGAACCTGAGCCAACCGAAGAGACTTCAGTAGAAAAGCCTACATCAACGGAAGCAGAGAAGAGACAAGATTTGAAGGTATCAAACCAAAAAGAGACTGTATGAAGCGGTAGGTAGTCCATCATTTCCACATCTACATTTATCATTGTGTTTTATGTATTATGAGAATCAGTTACTGGAATCTGAAGATCACTTAATGAAGAAAATTAGTTTTCCAGTGCTGGACTCTGATGGATACCATAATCCACTCTAATTAGATCAAAAGGAAATATAAGCTATAACCTCAACTAGGCCGATCTGAGAGGGCAACTTCTCTCCCTACCAACAACATAATATCTGAACTTCCCTTTACAACATCCTTTTTACCCTTCATTTTTCTCTTTTTCACGACCGATGCAAATTTCATTTTTCATTACTGCACGTTCTAATATATTACATAGGATACTATCAACAGAGAATTTATATGCTTGTTGAATACTTGAATTCAAAACTCTTCCTCCCTGGTTATTAGCTTTTAGAATTTTCATGCCAAGTCTGAATTCTGCTATCTCTGAGCTATCCTTTTTTGGATGGTGGAGATTATTTGGTTATTGATTTGAATTCCTGACTTGGTTGAAGATTTGGAAAATACCAATTTCATTTCAAAGT

Coding sequence (CDS)

ATGGTGATTTCAACTCCAACTCTATCCTTTACTTCTTCCATTCCAAAGCTTCCTCCATCTCTTTCTCCTTCATTTTCCTCTTCTAAATCCGCCTTCTTCGCCAACAATGCCACCGTCAGTTTCTTCACCAACGGTGACCATAACCATTCTTCGCTACTGCGTTTGACCAGCTTCAGAACTACCACCAAAACAACTCATAAGGGTCTCACTTGTAATGCTTTGTTTGGTCTTGGAGTGCCTGAACTTGTTGTAATCGCTGGTGTTGCAGCTTTGGTTTTTGGGCCTAAGAAGTTGCCTGAAGTTGGGAAGAGTATTGGGAAAACAGTCAAGAGCTTCCAACAGGCAGCTAAGGAGTTCGAGTCCGAGCTGAAGAAAGAACCTGAGCCAACCGAAGAGACTTCAGTAGAAAAGCCTACATCAACGGAAGCAGAGAAGAGACAAGATTTGAAGGTATCAAACCAAAAAGAGACTGTATGA

Protein sequence

MVISTPTLSFTSSIPKLPPSLSPSFSSSKSAFFANNATVSFFTNGDHNHSSLLRLTSFRTTTKTTHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPEPTEETSVEKPTSTEAEKRQDLKVSNQKETV

Homology

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BLAST of MELO3C015378.2 vs. NCBI nr
Match: XP_008450744.1 (PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Cucumis melo] >XP_008450746.1 PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Cucumis melo])

HSP 1 Score: 287.3 bits (734), Expect = 3.1e-74
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MVISTPTLSFTSSIPKLPPSLSPSFSSSKSAFFANNATVSFFTNGDHNHSSLLRLTSFRT 60
           MVISTPTLSFTSSIPKLPPSLSPSFSSSKSAFFANNATVSFFTNGDHNHSSLLRLTSFRT
Sbjct: 1   MVISTPTLSFTSSIPKLPPSLSPSFSSSKSAFFANNATVSFFTNGDHNHSSLLRLTSFRT 60

Query: 61  TTKTTHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120
           TTKTTHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE
Sbjct: 61  TTKTTHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120

Query: 121 SELKKEPEPTEETSVEKPTSTEAEKRQDLKVSNQKETV 159
           SELKKEPEPTEETSVEKPTSTEAEKRQDLKVSNQKETV
Sbjct: 121 SELKKEPEPTEETSVEKPTSTEAEKRQDLKVSNQKETV 158

[Close]

BLAST of MELO3C015378.2 vs. NCBI nr
Match: XP_004135654.1 (PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Cucumis sativus] >KGN66148.1 hypothetical protein Csa_1G573670 [Cucumis sativus])

HSP 1 Score: 268.5 bits (685), Expect = 1.5e-68
Identity = 149/158 (94.30%), Postives = 151/158 (95.57%), Query Frame = 0


Query: 1   MVISTPTLSFTSSIPKLPPSLSPSFSSSKSAFFANNATVSFFTNGDHNHSSLLRLTSFRT 60
           MVIS+PTLSFTSSIPKLPPSLS    SSKSAFFANNAT SFFT GDHNHSSLLRLTSFRT
Sbjct: 1   MVISSPTLSFTSSIPKLPPSLSXXXXSSKSAFFANNATTSFFTYGDHNHSSLLRLTSFRT 60

Query: 61  TTKTTHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120
           TTKTTHKG TCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE
Sbjct: 61  TTKTTHKGFTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120

Query: 121 SELKKEPEPTEETSVEKPTSTEAEKRQDLKVSNQKETV 159
           SELKKEPEPTEETSVEKPTSTEAE+RQDLKVSNQKETV
Sbjct: 121 SELKKEPEPTEETSVEKPTSTEAEERQDLKVSNQKETV 158

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BLAST of MELO3C015378.2 vs. NCBI nr
Match: XP_023529222.1 (sec-independent protein translocase protein TATA, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 218.4 bits (555), Expect = 1.7e-53
Identity = 126/158 (79.75%), Postives = 136/158 (86.08%), Query Frame = 0


Query: 1   MVISTPTLSFTSSIPKLPPSLSPSFSSSKSAFFANNATVSFFTNGDHNHSSLLRLTSFRT 60
           MVIS+ TLSFTSSIP+L PS SP FSSSKS+FFANNAT + F  GDH+HS LLR T  R 
Sbjct: 1   MVISSATLSFTSSIPRL-PSFSPPFSSSKSSFFANNATANSFNKGDHSHSLLLRTTRSRK 60

Query: 61  TTKTTHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120
           T    HKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE
Sbjct: 61  TMDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120

Query: 121 SELKKEPEPTEETSVEKPTSTEAEKRQDLKVSNQKETV 159
           SELKKEPE   ET+VEKPTS + E++QDLKVSNQKE+V
Sbjct: 121 SELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 157

[Close]

BLAST of MELO3C015378.2 vs. NCBI nr
Match: XP_022969040.1 (sec-independent protein translocase protein TATA, chloroplastic [Cucurbita maxima])

HSP 1 Score: 216.9 bits (551), Expect = 5.1e-53
Identity = 125/158 (79.11%), Postives = 135/158 (85.44%), Query Frame = 0


Query: 1   MVISTPTLSFTSSIPKLPPSLSPSFSSSKSAFFANNATVSFFTNGDHNHSSLLRLTSFRT 60
           MVIS+ TLSFTSSIP+L PS SP  SSSKS+FFANNAT + F  GDH+HSSLLR T  R 
Sbjct: 1   MVISSATLSFTSSIPRL-PSFSPPLSSSKSSFFANNATANSFNKGDHSHSSLLRTTRSRK 60

Query: 61  TTKTTHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120
           T    HKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE
Sbjct: 61  TMDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120

Query: 121 SELKKEPEPTEETSVEKPTSTEAEKRQDLKVSNQKETV 159
           SELKKEPE   ET+VEKPTS + E++QDLK SNQKE+V
Sbjct: 121 SELKKEPESIGETAVEKPTSVDDEEKQDLKASNQKESV 157

[Close]

BLAST of MELO3C015378.2 vs. NCBI nr
Match: XP_022932561.1 (sec-independent protein translocase protein TATA, chloroplastic [Cucurbita moschata])

HSP 1 Score: 216.1 bits (549), Expect = 8.7e-53
Identity = 125/158 (79.11%), Postives = 135/158 (85.44%), Query Frame = 0


Query: 1   MVISTPTLSFTSSIPKLPPSLSPSFSSSKSAFFANNATVSFFTNGDHNHSSLLRLTSFRT 60
           MVIS+ TLSFTSSIP+L PS SP FSSSKS+FFANNAT + F  GDH+HS LLR T  R 
Sbjct: 1   MVISSATLSFTSSIPRL-PSFSPPFSSSKSSFFANNATANSFNKGDHSHSLLLRTTRSRK 60

Query: 61  TTKTTHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120
           T    HKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE
Sbjct: 61  TMDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120

Query: 121 SELKKEPEPTEETSVEKPTSTEAEKRQDLKVSNQKETV 159
           SELKKEPE   ET+VEKP S + E++QDLKVSNQKE+V
Sbjct: 121 SELKKEPESIGETAVEKPASIDDEEKQDLKVSNQKESV 157

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BLAST of MELO3C015378.2 vs. TAIR10
Match: AT5G28750.1 (Bacterial sec-independent translocation protein mttA/Hcf106)

HSP 1 Score: 112.8 bits (281), Expect = 1.9e-25
Identity = 78/141 (55.32%), Postives = 89/141 (63.12%), Query Frame = 0


Query: 18  PPSLSPSFSSSKSAFFANNATVSFFTNGDHNHSSLLRLTSFRTTTKTTHKGLTCNALFGL 77
           PP   P  SSS+S+FF+N  TV+   N     +  L     R   + T K LTCNALFGL
Sbjct: 12  PPVSLPLLSSSRSSFFSNCFTVTTRPN-----TRSLVAIGRRIRQEPTRKPLTCNALFGL 71

Query: 78  GVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPEPTEETSVEK 137
           GVPEL VIAGVAAL+FGPKKLPE+GKSIGKTVKSFQQAAKEFESELK EPE +   S + 
Sbjct: 72  GVPELAVIAGVAALLFGPKKLPEIGKSIGKTVKSFQQAAKEFESELKTEPEESVAESSQV 131

Query: 138 PTSTEAEKRQDLKVSNQKETV 159
                         S+ KE V
Sbjct: 132 AXXXXXXXXXXXXSSSSKENV 147

[Close]

BLAST of MELO3C015378.2 vs. TAIR10
Match: AT5G52440.1 (Bacterial sec-independent translocation protein mttA/Hcf106)

HSP 1 Score: 43.5 bits (101), Expect = 1.4e-04
Identity = 44/145 (30.34%), Postives = 72/145 (49.66%), Query Frame = 0


Query: 1   MVISTPTLSFTSSIPKLPPSLSPSFSSSKSAFFANNATVS--FFTNGDHNHSSLLRL--- 60
           M ++   ++ +SS P +  S   S+   +S + A+   +S  F   G    S  + L   
Sbjct: 1   MAMALQIIASSSSSPTITKSHLFSYPPLQSRYKASKPNLSSWFSLLGSSRFSPYIGLKHL 60

Query: 61  -TSFRTTTKTTHKGLTCN------ALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKT 120
             S    +    K   C       +LFG+G PE +VI  VA LVFGPK L EV +++GKT
Sbjct: 61  GISISPKSSNPEKKRRCKSMMIRASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKT 120

Query: 121 VKSF-------QQAAKEFESELKKE 127
           +++F       Q  +++F+S L++E
Sbjct: 121 LRTFQPTIRELQDVSRDFKSTLERE 145

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BLAST of MELO3C015378.2 vs. Swiss-Prot
Match: sp|Q9XH46|TATA_PEA (Sec-independent protein translocase protein TATA, chloroplastic OS=Pisum sativum OX=3888 GN=TATA PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.7e-28
Identity = 92/152 (60.53%), Postives = 108/152 (71.05%), Query Frame = 0


Query: 7   TLSFTSSIPKLPPSLSPSFSSSKSAFFANNATVSFFTNGDHNHSSLLRLTSFRTTTKTTH 66
           TLS +SS   +P  L  S   S  +F ++N+          N SSLL L   R  T+TT 
Sbjct: 4   TLSISSS-SVIPTRLPNSSCYSNLSFLSSNS----------NTSSLL-LKKARIKTRTT- 63

Query: 67  KGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKE 126
           KG TCNA FGLGVPELVVIAGVAALVFGPKKLPEVG+SIG+TVKSFQQAAKEFE+ELKKE
Sbjct: 64  KGFTCNAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFETELKKE 123

Query: 127 PEPTEETSVEKPTSTEAEKRQDLKVSNQKETV 159
           P PTEE SV    ++E EK Q++KVS+ K+ V
Sbjct: 124 PNPTEEISV----ASEQEK-QEIKVSSTKDNV 137

[Close]

BLAST of MELO3C015378.2 vs. Swiss-Prot
Match: sp|Q9LKU2|TATA_ARATH (Sec-independent protein translocase protein TATA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TATA PE=1 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.4e-24
Identity = 78/141 (55.32%), Postives = 89/141 (63.12%), Query Frame = 0


Query: 18  PPSLSPSFSSSKSAFFANNATVSFFTNGDHNHSSLLRLTSFRTTTKTTHKGLTCNALFGL 77
           PP   P  SSS+S+FF+N  TV+   N     +  L     R   + T K LTCNALFGL
Sbjct: 12  PPVSLPLLSSSRSSFFSNCFTVTTRPN-----TRSLVAIGRRIRQEPTRKPLTCNALFGL 71

Query: 78  GVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPEPTEETSVEK 137
           GVPEL VIAGVAAL+FGPKKLPE+GKSIGKTVKSFQQAAKEFESELK EPE +   S + 
Sbjct: 72  GVPELAVIAGVAALLFGPKKLPEIGKSIGKTVKSFQQAAKEFESELKTEPEESVAESSQV 131

Query: 138 PTSTEAEKRQDLKVSNQKETV 159
                         S+ KE V
Sbjct: 132 AXXXXXXXXXXXXSSSSKENV 147

[Close]

BLAST of MELO3C015378.2 vs. Swiss-Prot
Match: sp|Q9XFJ8|TATA_MAIZE (Sec-independent protein translocase protein TATA, chloroplastic OS=Zea mays OX=4577 GN=TATA PE=1 SV=2)

HSP 1 Score: 99.8 bits (247), Expect = 3.0e-20
Identity = 58/90 (64.44%), Postives = 70/90 (77.78%), Query Frame = 0


Query: 69  LTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEP- 128
           L C  LFGLGVPEL VIAGVAALVFGPK+LPE+G+SIGKTVKSFQQAAKEFE+ELKKEP 
Sbjct: 80  LGCKCLFGLGVPELAVIAGVAALVFGPKQLPEIGRSIGKTVKSFQQAAKEFETELKKEPG 139

Query: 129 EPTEETSVEKPTSTEAEKRQDLKVSNQKET 158
           E  ++     PT+    + + L+ S+ KE+
Sbjct: 140 EGGDQPPPATPTAVSGGEEKGLEASSSKES 169

[Close]

BLAST of MELO3C015378.2 vs. Swiss-Prot
Match: sp|Q75GK3|TATA_ORYSJ (Sec-independent protein translocase protein TATA, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=TATA PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.3e-19
Identity = 48/54 (88.89%), Postives = 52/54 (96.30%), Query Frame = 0


Query: 71  CNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELK 125
           C  LFGLGVPELVVIAGVAALVFGPK+LPE+G+SIGKTVKSFQQAAKEFE+ELK
Sbjct: 81  CKCLFGLGVPELVVIAGVAALVFGPKQLPEIGRSIGKTVKSFQQAAKEFETELK 134

[Close]

BLAST of MELO3C015378.2 vs. Swiss-Prot
Match: sp|Q31RR1|TATA_SYNE7 (Sec-independent protein translocase protein TatA OS=Synechococcus elongatus (strain PCC 7942) OX=1140 GN=tatA PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.6e-12
Identity = 40/86 (46.51%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 75  FGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPEPTEETS 134
           FG+G+PE++VI  +A LVFGPKKLPE+G+S+GK ++ FQ A++EFESE+K+E + T  T 
Sbjct: 4   FGIGLPEMLVILAIALLVFGPKKLPEIGRSLGKALRGFQDASREFESEIKREIDRTPATP 63

Query: 135 VE---KPTSTEAEKRQDLKVSNQKET 158
            E   +P   ++   + + V  Q ET
Sbjct: 64  AEATVEPPVLDSAPTEAVTVEKQTET 89

[Close]

BLAST of MELO3C015378.2 vs. TrEMBL
Match: tr|A0A1S3BPB0|A0A1S3BPB0_CUCME (sec-independent protein translocase protein TATA, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492233 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 2.0e-74
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MVISTPTLSFTSSIPKLPPSLSPSFSSSKSAFFANNATVSFFTNGDHNHSSLLRLTSFRT 60
           MVISTPTLSFTSSIPKLPPSLSPSFSSSKSAFFANNATVSFFTNGDHNHSSLLRLTSFRT
Sbjct: 1   MVISTPTLSFTSSIPKLPPSLSPSFSSSKSAFFANNATVSFFTNGDHNHSSLLRLTSFRT 60

Query: 61  TTKTTHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120
           TTKTTHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE
Sbjct: 61  TTKTTHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120

Query: 121 SELKKEPEPTEETSVEKPTSTEAEKRQDLKVSNQKETV 159
           SELKKEPEPTEETSVEKPTSTEAEKRQDLKVSNQKETV
Sbjct: 121 SELKKEPEPTEETSVEKPTSTEAEKRQDLKVSNQKETV 158

[Close]

BLAST of MELO3C015378.2 vs. TrEMBL
Match: tr|A0A0A0LWL1|A0A0A0LWL1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573670 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 9.7e-69
Identity = 149/158 (94.30%), Postives = 151/158 (95.57%), Query Frame = 0


Query: 1   MVISTPTLSFTSSIPKLPPSLSPSFSSSKSAFFANNATVSFFTNGDHNHSSLLRLTSFRT 60
           MVIS+PTLSFTSSIPKLPPSLS    SSKSAFFANNAT SFFT GDHNHSSLLRLTSFRT
Sbjct: 1   MVISSPTLSFTSSIPKLPPSLSXXXXSSKSAFFANNATTSFFTYGDHNHSSLLRLTSFRT 60

Query: 61  TTKTTHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120
           TTKTTHKG TCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE
Sbjct: 61  TTKTTHKGFTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120

Query: 121 SELKKEPEPTEETSVEKPTSTEAEKRQDLKVSNQKETV 159
           SELKKEPEPTEETSVEKPTSTEAE+RQDLKVSNQKETV
Sbjct: 121 SELKKEPEPTEETSVEKPTSTEAEERQDLKVSNQKETV 158

[Close]

BLAST of MELO3C015378.2 vs. TrEMBL
Match: tr|A0A2P4NCQ6|A0A2P4NCQ6_QUESU (Sec-independent protein translocase protein tata, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_61474 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.4e-36
Identity = 104/161 (64.60%), Postives = 123/161 (76.40%), Query Frame = 0


Query: 1   MVISTPTLS-FTSSIPKL-PPSLSPSFSSSKSAFFANNATVSFFTNGDHNHSSL-LRLTS 60
           M IS+  LS  ++SIP++ PPSL   FSSSKS FF +NAT++ F     N ++L L   +
Sbjct: 1   MEISSICLSPVSTSIPRVTPPSL--PFSSSKSTFFTSNATLTLFNKTKANSNTLVLGGAA 60

Query: 61  FRTTTKTTHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAK 120
            R   +   KGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAK
Sbjct: 61  TRIRVERARKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAK 120

Query: 121 EFESELKKEPEPTEETSVEKPTSTEAEKRQDLKVSNQKETV 159
           EFESELKKEP+   E  VEKPT+   E++QD+KVS+ KE+V
Sbjct: 121 EFESELKKEPDSITENPVEKPTAVSEEEKQDIKVSSTKESV 159

[Close]

BLAST of MELO3C015378.2 vs. TrEMBL
Match: tr|A0A2I4FF25|A0A2I4FF25_9ROSI (sec-independent protein translocase protein TATA, chloroplastic OS=Juglans regia OX=51240 GN=LOC108998206 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.1e-35
Identity = 100/158 (63.29%), Postives = 114/158 (72.15%), Query Frame = 0


Query: 1   MVISTPTLSFTSSIPKLPPSLSPSFSSSKSAFFANNATVSFFTNGDHNHSSLLRLTSFRT 60
           M +S+ TL F+S+    PPSL   FSSS S F  N AT +F     H  ++L+  +  RT
Sbjct: 1   MEVSSVTLCFSSTSRMPPPSL--PFSSSNSTFLTNFATSTFLNKTKHKSNALV-ASRTRT 60

Query: 61  TTKTTHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120
            T    KGLTCNALFGLGVPELVVIAGV ALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE
Sbjct: 61  RTDPAKKGLTCNALFGLGVPELVVIAGVVALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120

Query: 121 SELKKEPEPTEETSVEKPTSTEAEKRQDLKVSNQKETV 159
           SELKKEP+ T E   EKP S   E++QD+KVS+ KE V
Sbjct: 121 SELKKEPDSTIEAPTEKPASLSEEEKQDIKVSSSKENV 155

[Close]

BLAST of MELO3C015378.2 vs. TrEMBL
Match: tr|A9P9F0|A9P9F0_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.5e-32
Identity = 96/158 (60.76%), Postives = 117/158 (74.05%), Query Frame = 0


Query: 1   MVISTPTLSFTSSIPKLPPSLSPSFSSSKSAFFANNATVSFFTNGDHNHSSLLRLTSFRT 60
           M IS+ TLSF    PK PP L   FSSS+S FF    T +FF     +++SL+ L   R+
Sbjct: 1   MEISSITLSF----PKPPPCL--PFSSSQSTFF---NTTAFFNKSSKSYNSLV-LGKTRS 60

Query: 61  TTKTTHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120
            ++   KGLTCNALFGLGVPELVVIAGVA L+FGPK+LPEVG+SIGKTVKSFQQAAKEFE
Sbjct: 61  RSQRAKKGLTCNALFGLGVPELVVIAGVATLLFGPKQLPEVGRSIGKTVKSFQQAAKEFE 120

Query: 121 SELKKEPEPTEETSVEKPTSTEAEKRQDLKVSNQKETV 159
           SELKKEP+ T +T  E+PT+   EK+ D +VS+ KE+V
Sbjct: 121 SELKKEPDSTSDTPGEQPTTISEEKKHDSEVSSSKESV 148

The following BLAST results are available for this feature:

BLAST of MELO3C015378.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450744.1	3.1e-74	100.00	PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Cucu...	[more]
XP_004135654.1	1.5e-68	94.30	PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Cucu...	[more]
XP_023529222.1	1.7e-53	79.75	sec-independent protein translocase protein TATA, chloroplastic [Cucurbita pepo ...	[more]
XP_022969040.1	5.1e-53	79.11	sec-independent protein translocase protein TATA, chloroplastic [Cucurbita maxim...	[more]
XP_022932561.1	8.7e-53	79.11	sec-independent protein translocase protein TATA, chloroplastic [Cucurbita mosch...	[more]

BLAST of MELO3C015378.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G28750.1	1.9e-25	55.32	Bacterial sec-independent translocation protein mttA/Hcf106	[more]
AT5G52440.1	1.4e-04	30.34	Bacterial sec-independent translocation protein mttA/Hcf106	[more]

BLAST of MELO3C015378.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9XH46\|TATA_PEA	1.7e-28	60.53	Sec-independent protein translocase protein TATA, chloroplastic OS=Pisum sativum...	[more]
sp\|Q9LKU2\|TATA_ARATH	3.4e-24	55.32	Sec-independent protein translocase protein TATA, chloroplastic OS=Arabidopsis t...	[more]
sp\|Q9XFJ8\|TATA_MAIZE	3.0e-20	64.44	Sec-independent protein translocase protein TATA, chloroplastic OS=Zea mays OX=4...	[more]
sp\|Q75GK3\|TATA_ORYSJ	4.3e-19	88.89	Sec-independent protein translocase protein TATA, chloroplastic OS=Oryza sativa ...	[more]
sp\|Q31RR1\|TATA_SYNE7	6.6e-12	46.51	Sec-independent protein translocase protein TatA OS=Synechococcus elongatus (str...	[more]

BLAST of MELO3C015378.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BPB0\|A0A1S3BPB0_CUCME	2.0e-74	100.00	sec-independent protein translocase protein TATA, chloroplastic OS=Cucumis melo ...	[more]
tr\|A0A0A0LWL1\|A0A0A0LWL1_CUCSA	9.7e-69	94.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573670 PE=3 SV=1	[more]
tr\|A0A2P4NCQ6\|A0A2P4NCQ6_QUESU	6.4e-36	64.60	Sec-independent protein translocase protein tata, chloroplastic OS=Quercus suber...	[more]
tr\|A0A2I4FF25\|A0A2I4FF25_9ROSI	1.1e-35	63.29	sec-independent protein translocase protein TATA, chloroplastic OS=Juglans regia...	[more]
tr\|A9P9F0\|A9P9F0_POPTR	2.5e-32	60.76	Uncharacterized protein OS=Populus trichocarpa OX=3694 PE=2 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane
GO:0005886	plasma membrane
GO:0016020	membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0015031	protein transport
GO:0009306	protein secretion

Vocabulary: **Molecular Function**
Term	Definition
GO:0008565	protein transporter activity

Vocabulary: **INTERPRO**
Term	Definition
IPR006312	TatA/E
IPR003369	TatA/B/E
IPR003998	TatB-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009306	protein secretion
biological_process	GO:0015031	protein transport
biological_process	GO:0045038	protein import into chloroplast thylakoid membrane
biological_process	GO:0043953	protein transport by the Tat complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0033281	TAT protein transport complex
cellular_component	GO:0031361	integral component of thylakoid membrane
molecular_function	GO:0008565	protein transporter activity
molecular_function	GO:0009977	proton motive force dependent protein transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C015378.2.1	MELO3C015378.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003998	Twin-arginine translocation protein TatB-like	PRINTS	PR01506	TATBPROTEIN	coord: 74..94 score: 35.53 coord: 94..113 score: 27.65 coord: 113..131 score: 24.85
IPR003369	Sec-independent protein translocase protein TatA/B/E	PFAM	PF02416	MttA_Hcf106	coord: 77..126 e-value: 1.0E-19 score: 69.5
IPR006312	Sec-independent protein translocase protein TatA/E	TIGRFAM	TIGR01411	TIGR01411	coord: 76..122 e-value: 5.0E-20 score: 68.8
IPR006312	Sec-independent protein translocase protein TatA/E	HAMAP	MF_00236	TatA_E	coord: 74..157 score: 19.04
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..158
None	No IPR available	PANTHER	PTHR33162	FAMILY NOT NAMED	coord: 22..142

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C015378.2	Csa1G573670	Cucumber (Chinese Long) v2	cumedB033
MELO3C015378.2	CSPI01G27260	Wild cucumber (PI 183967)	cpimedB036
MELO3C015378.2	Cucsa.289100	Cucumber (Gy14) v1	cgymedB480
MELO3C015378.2	CmaCh11G009890	Cucurbita maxima (Rimu)	cmamedB125
MELO3C015378.2	CmoCh11G010070	Cucurbita moschata (Rifu)	cmomedB115
MELO3C015378.2	Lsi06G001900	Bottle gourd (USVL1VR-Ls)	lsimedB418
MELO3C015378.2	Cp4.1LG04g01840	Cucurbita pepo (Zucchini)	cpemedB731
MELO3C015378.2	CsGy1G026470	Cucumber (Gy14) v2	cgybmedB032
MELO3C015378.2	Cla011293	Watermelon (97103) v1	medwmB262
MELO3C015378.2	ClCG03G016400	Watermelon (Charleston Gray)	medwcgB237
MELO3C015378.2	Carg16487	Silver-seed gourd	carmedB0905
MELO3C015378.2	CsaV3_1G039570	Cucumber (Chinese Long) v3	cucmedB039

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C015378.2	Cucurbita moschata (Rifu)	cmomedB069
MELO3C015378.2	Cucurbita pepo (Zucchini)	cpemedB391
MELO3C015378.2	Bottle gourd (USVL1VR-Ls)	lsimedB114
MELO3C015378.2	Watermelon (Charleston Gray)	medwcgB229
MELO3C015378.2	Watermelon (97103) v1	medwmB276
MELO3C015378.2	Watermelon (97103) v2	medwmbB235