MELO3C015378.2.1 (mRNA) Melon (DHL92) v3.6.1
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATCCCACGTGAAAAAGATTGATACAAAAAATTTCAAAGCCCCCAAATAAAATTAATCAAAATGAGATGAGAAGCATTCCCTAAACCGATAAAGATTCCCAAATTTCCAATCAAAGATTTTTCTCCTCAACGACGAAGGCGACCATGGTGATTTCAACTCCAACTCTATCCTTTACTTCTTCCATTCCAAAGCTTCCTCCATCTCTTTCTCCTTCATTTTCCTCTTCTAAATCCGCCTTCTTCGCCAACAATGCCACCGTCAGTTTCTTCACCAACGGTGACCATAACCATTCTTCGCTACTGCGTTTGACCAGCTTCAGAACTACCACCAAAACAACTCATAAGGGTCTCACTTGTAATGCTTTGTTTGGTCTTGGAGTGCCTGAACTTGTTGTAATCGCTGGTGTTGCAGCTTTGGTTTTTGGGCCTAAGAAGTTGCCTGAAGTTGGGAAGAGTATTGGGAAAACAGTCAAGAGCTTCCAACAGGTATGTTTGTGGTTTTAGTTGATTGGGTCAGATTGGATGCTCTGGAATTGTGTAATTGTTTGGGATTTGAAATGGGGATTCGGGGAAATGAAGTTTTTTTTTTTTTTTAACTGAATTTGGATTGTGTGCGCGATGTTTGAGTTTCACTTGGCTTGTCCACTAATACAGAAAAGTAATTGATAATTGTTGTTTTGGGTTTATTTTGACTAACTAGTTAGCAAAATTAACCCTTCTTTTCGTGGCTACATGAGAAGCAACAATCTTGAATTAGTTGAGTTGTCGATTTATTAGCTTTGTCCAAAGTATTACTGAAAGTATTCCCTAAGATTGAGCTGTCTATGAATTTATTTTTCTGGCTGGGCGACTGTGTGGGAGAATGAGCTTTATTAAAGTTCAAATTTTAGAATTTTACGTCATTCTAATATGTAAAATCTTCCAGCCTTGCGAGTTCTGTTCTTTGTCCTTGATCCTTTGTTGTAGTTTTCTTCAACTAATGCATTCTGAAAGTACTTTTGTTAATTGAAGTTTTGCGAAGTTTTGGATGTTTTGCTTTTGGATCATGAATAATCCGATCTAGTCATCAGTCATGTTAGACTAAATGGTATATGTAATATTTCCAGGATCCTTACTGGATATCTCTCTGTTGAATATTGTTTCTTATGTTTTTACGAATGCTTTTCAATTCATTTATTCTTAGTAGGTGGTGTTTTTAATGGACGTGAAATCTTGTTTCCTTTTCCTTTGTCTTTAAACTACGCGGGAGTCTTTTGCTGATATTTCCAGAGTGGAAAAATGGGATATGCATTCTCCAATTAAGAAACGTCAACAAACTCTTAATCTTGAGAAAATTTCTTTTCTACCTTCACCCTTTCTTTAGTATTGCAAATGGCAGTAGAGATCTTCATAGGGCGGGGCCCCATCCTGTCCTCAGGGAATAGATGCCCTGGATGGAATGCCCCCAAGTCATGATCGTAGTCCCTGCGTCTTCTCATTGATGTCGTTCGAGGGCTTCTCTCTCCAAACTTAGAACTGTAAAGTCAAGCTCATTCTTCTCTGAACGGCTTGTTCGTGACAAAATATCTCTTTACTTGATGTAGCTACCCGATGGGTAATGGGTCTTCTCGTCTTCCCCCTCAAAGATTAGTACCTCAGGTTTCCTCAATTCTATATTGAATAACAGCACCTCACAAGTGCTAGGAGCGTTCTCTGTTTCATTGGTATGCCTTTTCTCTCTCATTGCACTTTTAGCCGGTCGTTTGCCTCTATTCATGTGTGTCTGTTCAAGGGAGCCTGAACTACCTCCATCTCTGGTTTCCCCCTTCCTTCTAGGCTACGCCTTTTATCCTCACATTATTTACTGTTCCAATCTCTAGCCTAACTCTTCCTGGATTCGGGTGAATTCATTTGCTATCATGGCTTCTACTCCATGTTCGATTTGGATAAACTTTTGATCCATCTTTTGAATCTTCGCAATATACCTAGGCCTGGTAGTATGTGTGGTACTTACTACATGAACATTAACGTTCTTTGATTATGCTGTTGTTATGGTATGATTTCCCATCGTATTCAATACAATTTAAAATCTTCGTTAATTTCCATTTTCTTTGATGAGAAATCAAGCTGGATGAAAATATGAAAAAAAATACTGAAAAAGAGAAAAGAAATGGAGTACATAAAAAAGACAACGCAACTAACAAAAGAGGAGCATCAAATCTAGAGTATATAGAATGGGCTTGAGCCCGACTAAAGGTTATTGTGAATTTCATTAATTCATCTATGTTTAGGAATGACAAACTTTTTTATCTTTCTAATTGAACAGTGTTTGGGGCCTTGGGGTAAGAGATTTGAACTTCTGATCTCTCAATCAAGTGTAAATATCTAAACTAGTTGATAAGTTGGCGACGGCCACTTTTGTCATAGAAAAAATACCTCCTACGTAATAGTATCATGCTTGGGAGCATGTAAAAATGTTCTTAGAAAAAAGCAAAGCACCTTGAAGTAGGTTGTTATAGAGTGTGTTTAGTCTAAACGGCTGAATGCAAAGTACTTTTAAGAATGTAGAACTAAACATTTAACTGATTTCTTTTAAACAATTTTAAAGTAATGTAGCTAAAACTACTTTAAAAGCACTCTGAAACATAAATTGAGAGTCTAAGACCGTCACATTTGTTAGTGTTGAGTTAGAGAAAGTTATTGTGGAATGAGGATACAGTAATCTTCAGTTCATACTTCATAGTTCGTTGTAGATGATTAATTAATGTATGGGTCTATTTCTAAGAAATCAACAACTCCGTCAATTATACACCCTTAAAACAGCTACCTAGTATTTTGTTGATGAAGCATGTTTTCTGTCTTTTTTCATCAATAGAGTCAAGTATTAGGAAAACTTCAATTGCTCAATTTGTTAGAAAAATCAGCAAAACGACGCTTCAATATTTCAACTTTGGTAGTTGGAGGAATAATGTTGCTAATATTATTGCAGGCAGCTAAGGAGTTCGAGTCCGAGCTGAAGAAAGAACCTGAGCCAACCGAAGAGACTTCAGTAGAAAAGCCTACATCAACGGAAGCAGAGAAGAGACAAGATTTGAAGGTATCAAACCAAAAAGAGACTGTATGAAGCGGTAGGTAGTCCATCATTTCCACATCTACATTTATCATTGTGTTTTATGTATTATGAGAATCAGTTACTGGAATCTGAAGATCACTTAATGAAGAAAATTAGTTTTCCAGTGCTGGACTCTGATGGATACCATAATCCACTCTAATTAGATCAAAAGGAAATATAAGCTATAACCTCAACTAGGCCGATCTGAGAGGGCAACTTCTCTCCCTACCAACAACATAATATCTGAACTTCCCTTTACAACATCCTTTTTACCCTTCATTTTTCTCTTTTTCACGACCGATGCAAATTTCATTTTTCATTACTGCACGTTCTAATATATTACATAGGATACTATCAACAGAGAATTTATATGCTTGTTGAATACTTGAATTCAAAACTCTTCCTCCCTGGTTATTAGCTTTTAGAATTTTCATGCCAAGTCTGAATTCTGCTATCTCTGAGCTATCCTTTTTTGGATGGTGGAGATTATTTGGTTATTGATTTGAATTCCTGACTTGGTTGAAGATTTGGAAAATACCAATTTCATTTCAAAGT AATCCCACGTGAAAAAGATTGATACAAAAAATTTCAAAGCCCCCAAATAAAATTAATCAAAATGAGATGAGAAGCATTCCCTAAACCGATAAAGATTCCCAAATTTCCAATCAAAGATTTTTCTCCTCAACGACGAAGGCGACCATGGTGATTTCAACTCCAACTCTATCCTTTACTTCTTCCATTCCAAAGCTTCCTCCATCTCTTTCTCCTTCATTTTCCTCTTCTAAATCCGCCTTCTTCGCCAACAATGCCACCGTCAGTTTCTTCACCAACGGTGACCATAACCATTCTTCGCTACTGCGTTTGACCAGCTTCAGAACTACCACCAAAACAACTCATAAGGGTCTCACTTGTAATGCTTTGTTTGGTCTTGGAGTGCCTGAACTTGTTGTAATCGCTGGTGTTGCAGCTTTGGTTTTTGGGCCTAAGAAGTTGCCTGAAGTTGGGAAGAGTATTGGGAAAACAGTCAAGAGCTTCCAACAGGCAGCTAAGGAGTTCGAGTCCGAGCTGAAGAAAGAACCTGAGCCAACCGAAGAGACTTCAGTAGAAAAGCCTACATCAACGGAAGCAGAGAAGAGACAAGATTTGAAGGTATCAAACCAAAAAGAGACTGTATGAAGCGGTAGGTAGTCCATCATTTCCACATCTACATTTATCATTGTGTTTTATGTATTATGAGAATCAGTTACTGGAATCTGAAGATCACTTAATGAAGAAAATTAGTTTTCCAGTGCTGGACTCTGATGGATACCATAATCCACTCTAATTAGATCAAAAGGAAATATAAGCTATAACCTCAACTAGGCCGATCTGAGAGGGCAACTTCTCTCCCTACCAACAACATAATATCTGAACTTCCCTTTACAACATCCTTTTTACCCTTCATTTTTCTCTTTTTCACGACCGATGCAAATTTCATTTTTCATTACTGCACGTTCTAATATATTACATAGGATACTATCAACAGAGAATTTATATGCTTGTTGAATACTTGAATTCAAAACTCTTCCTCCCTGGTTATTAGCTTTTAGAATTTTCATGCCAAGTCTGAATTCTGCTATCTCTGAGCTATCCTTTTTTGGATGGTGGAGATTATTTGGTTATTGATTTGAATTCCTGACTTGGTTGAAGATTTGGAAAATACCAATTTCATTTCAAAGT ATGGTGATTTCAACTCCAACTCTATCCTTTACTTCTTCCATTCCAAAGCTTCCTCCATCTCTTTCTCCTTCATTTTCCTCTTCTAAATCCGCCTTCTTCGCCAACAATGCCACCGTCAGTTTCTTCACCAACGGTGACCATAACCATTCTTCGCTACTGCGTTTGACCAGCTTCAGAACTACCACCAAAACAACTCATAAGGGTCTCACTTGTAATGCTTTGTTTGGTCTTGGAGTGCCTGAACTTGTTGTAATCGCTGGTGTTGCAGCTTTGGTTTTTGGGCCTAAGAAGTTGCCTGAAGTTGGGAAGAGTATTGGGAAAACAGTCAAGAGCTTCCAACAGGCAGCTAAGGAGTTCGAGTCCGAGCTGAAGAAAGAACCTGAGCCAACCGAAGAGACTTCAGTAGAAAAGCCTACATCAACGGAAGCAGAGAAGAGACAAGATTTGAAGGTATCAAACCAAAAAGAGACTGTATGA MVISTPTLSFTSSIPKLPPSLSPSFSSSKSAFFANNATVSFFTNGDHNHSSLLRLTSFRTTTKTTHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPEPTEETSVEKPTSTEAEKRQDLKVSNQKETV
BLAST of MELO3C015378.2.1 vs. NCBI nr
Match: XP_008450744.1 (PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Cucumis melo] >XP_008450746.1 PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Cucumis melo]) HSP 1 Score: 287.3 bits (734), Expect = 3.1e-74 Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0
BLAST of MELO3C015378.2.1 vs. NCBI nr
Match: XP_004135654.1 (PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Cucumis sativus] >KGN66148.1 hypothetical protein Csa_1G573670 [Cucumis sativus]) HSP 1 Score: 268.5 bits (685), Expect = 1.5e-68 Identity = 149/158 (94.30%), Postives = 151/158 (95.57%), Query Frame = 0
BLAST of MELO3C015378.2.1 vs. NCBI nr
Match: XP_023529222.1 (sec-independent protein translocase protein TATA, chloroplastic [Cucurbita pepo subsp. pepo]) HSP 1 Score: 218.4 bits (555), Expect = 1.7e-53 Identity = 126/158 (79.75%), Postives = 136/158 (86.08%), Query Frame = 0
BLAST of MELO3C015378.2.1 vs. NCBI nr
Match: XP_022969040.1 (sec-independent protein translocase protein TATA, chloroplastic [Cucurbita maxima]) HSP 1 Score: 216.9 bits (551), Expect = 5.1e-53 Identity = 125/158 (79.11%), Postives = 135/158 (85.44%), Query Frame = 0
BLAST of MELO3C015378.2.1 vs. NCBI nr
Match: XP_022932561.1 (sec-independent protein translocase protein TATA, chloroplastic [Cucurbita moschata]) HSP 1 Score: 216.1 bits (549), Expect = 8.7e-53 Identity = 125/158 (79.11%), Postives = 135/158 (85.44%), Query Frame = 0
BLAST of MELO3C015378.2.1 vs. TAIR10
Match: AT5G28750.1 (Bacterial sec-independent translocation protein mttA/Hcf106) HSP 1 Score: 112.8 bits (281), Expect = 1.9e-25 Identity = 78/141 (55.32%), Postives = 89/141 (63.12%), Query Frame = 0
BLAST of MELO3C015378.2.1 vs. TAIR10
Match: AT5G52440.1 (Bacterial sec-independent translocation protein mttA/Hcf106) HSP 1 Score: 43.5 bits (101), Expect = 1.4e-04 Identity = 44/145 (30.34%), Postives = 72/145 (49.66%), Query Frame = 0
BLAST of MELO3C015378.2.1 vs. Swiss-Prot
Match: sp|Q9XH46|TATA_PEA (Sec-independent protein translocase protein TATA, chloroplastic OS=Pisum sativum OX=3888 GN=TATA PE=1 SV=1) HSP 1 Score: 127.1 bits (318), Expect = 1.7e-28 Identity = 92/152 (60.53%), Postives = 108/152 (71.05%), Query Frame = 0
BLAST of MELO3C015378.2.1 vs. Swiss-Prot
Match: sp|Q9LKU2|TATA_ARATH (Sec-independent protein translocase protein TATA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TATA PE=1 SV=1) HSP 1 Score: 112.8 bits (281), Expect = 3.4e-24 Identity = 78/141 (55.32%), Postives = 89/141 (63.12%), Query Frame = 0
BLAST of MELO3C015378.2.1 vs. Swiss-Prot
Match: sp|Q9XFJ8|TATA_MAIZE (Sec-independent protein translocase protein TATA, chloroplastic OS=Zea mays OX=4577 GN=TATA PE=1 SV=2) HSP 1 Score: 99.8 bits (247), Expect = 3.0e-20 Identity = 58/90 (64.44%), Postives = 70/90 (77.78%), Query Frame = 0
BLAST of MELO3C015378.2.1 vs. Swiss-Prot
Match: sp|Q75GK3|TATA_ORYSJ (Sec-independent protein translocase protein TATA, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=TATA PE=2 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 4.3e-19 Identity = 48/54 (88.89%), Postives = 52/54 (96.30%), Query Frame = 0
BLAST of MELO3C015378.2.1 vs. Swiss-Prot
Match: sp|Q31RR1|TATA_SYNE7 (Sec-independent protein translocase protein TatA OS=Synechococcus elongatus (strain PCC 7942) OX=1140 GN=tatA PE=3 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 6.6e-12 Identity = 40/86 (46.51%), Postives = 60/86 (69.77%), Query Frame = 0
BLAST of MELO3C015378.2.1 vs. TrEMBL
Match: tr|A0A1S3BPB0|A0A1S3BPB0_CUCME (sec-independent protein translocase protein TATA, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492233 PE=3 SV=1) HSP 1 Score: 287.3 bits (734), Expect = 2.0e-74 Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0
BLAST of MELO3C015378.2.1 vs. TrEMBL
Match: tr|A0A0A0LWL1|A0A0A0LWL1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573670 PE=3 SV=1) HSP 1 Score: 268.5 bits (685), Expect = 9.7e-69 Identity = 149/158 (94.30%), Postives = 151/158 (95.57%), Query Frame = 0
BLAST of MELO3C015378.2.1 vs. TrEMBL
Match: tr|A0A2P4NCQ6|A0A2P4NCQ6_QUESU (Sec-independent protein translocase protein tata, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_61474 PE=3 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 6.4e-36 Identity = 104/161 (64.60%), Postives = 123/161 (76.40%), Query Frame = 0
BLAST of MELO3C015378.2.1 vs. TrEMBL
Match: tr|A0A2I4FF25|A0A2I4FF25_9ROSI (sec-independent protein translocase protein TATA, chloroplastic OS=Juglans regia OX=51240 GN=LOC108998206 PE=3 SV=1) HSP 1 Score: 158.7 bits (400), Expect = 1.1e-35 Identity = 100/158 (63.29%), Postives = 114/158 (72.15%), Query Frame = 0
BLAST of MELO3C015378.2.1 vs. TrEMBL
Match: tr|A9P9F0|A9P9F0_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 PE=2 SV=1) HSP 1 Score: 147.5 bits (371), Expect = 2.5e-32 Identity = 96/158 (60.76%), Postives = 117/158 (74.05%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
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