Carg16487-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16487-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	sec-independent protein translocase protein TATA, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_130 : 934684 .. 940856 (+)
Sequence length	474

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAATCTCATCTGTAACTTTATCCTTCACATCTTCCATTCCCAGGCTTCCATCGTTTTCCCCTCCGTTTTCCTCCTCCAAATCATCCTTCTTCGCCAACAATGTCACCGCCAATTCCTTCAACAAAGGCGACCATAGCCATTCTTCGCTATTGCGAACCACCAGGTCCAGAAAGACGATGGATAGAGCTCATAAGGGTCTCACTTGTAACGCTCTGTTTGGACTTGGAGTGCCTGAGCTTGTTGTAATTGCCGGCGTCGCCGCTCTGGTTTTTGGCCCCAAGAAGTTGCCTGAAGTCGGGAAGAGTATTGGAAAAACGGTCAAGAGCTTCCAACAGGTATGTTTATGTGTGATTTTAATCAATTGGGTCAGTTTGGTTGCTCGGAGATTGTTAATTATTAGGGATTTGATATGGGGAAGATTTTTTTTCCACTGGATTTGGATAGTATGTGGTGTAGATGTTTGGAAATTGAGTATTTGATGATTGTTGTTTCGTATATTCGGATTAGGGAAGATTTTTACTGAATTTGAAATGAGATTGAATTGATGCAAAGTACTTTTTAGCTAACTAGAAAGCTTATCTACTTTTTCATGGGACTTGAACAACAATAGTTTCGAATTAGATGAAGCCTTGGTTTCGTGCCTCTGGATGTAAATAGAAATGCTTCACTTAATAACAGTCCTATCAAAATCTGTCGTCAGTTGTCACGCAGATGTATTGTCATACCTCTCATTTAGTTCATAACCCTTTTAGTTCATATTCCCATTTATTTGGTTCATGTATGAGAATTAGTATTGCTATACCTAGATAAAGGCTTGCTTAGCATTGCTTTGAGGTGTGGAGTCATTGTGTGATGTCCCATATTGGTTGGAGAGGAGAACAAAACACCCTTTATAAGGGTGTGGAAACCTTCCCCTAGTAGACACGTTTTAAAGCCTTGAGGGGAAGCCCAAAAGGGAAAGCTCAAAGAGGACAATATCTGCTCGCAGTGGATCTGGGCTGTTACAAATGGTATCATAGGCAGACACTGGACTATTTGCCGGCTGTTCCCCAAAGGGGGTAGACACGAGGCGGTGTGCCAGTAAGGACGCTGGCCCCAAAGGGGGTGGATTTGGTGGCGGTTCCACATCGATTGAAGAAAGGAACGAGTGTCAGTGAGGACGCTGGGCCCCGAAGGGGGGTAGATTGTGATGTCCCCACACTAGTTGGAGAGGAGAACAAAATACCCTTTATAAGGGTGTGGAAACCTTCTCCTAGCAAACGCGTTTTAAAGCCTTGAGGGGAAGCCTGAAAGGGAGAGCTCAAATAGGACAATATTTGCTAGTAGTGGATCTGGGCTGTTACACATTGTCATTTTGTATTTGCCTAGAGGCAATTGGGAGGAACTTTGTTGTAGTGTGAGAGTGTGAGAGATACACTTGTAAACACTTTGGTTATAGTGTGATTGACTACCACCTGTCGATGTAGGAGAATTTATTCTCTCCAATCCACGTAAATCTTTGTGTCTCTTTGTTTAATTTTCTGTTTGTGAGTGTGAGTGCGACCAATCTTGCTTTCGCTTAGGCTACAACAAATGGGTATCAAAACATTTTGGTTGTGGCGTTTGGGTACAACAAGTGGTATCATAGCATTAAAGGTTGTGGCATTACGGCACAACAAAGTCATTCCGAACATTTAAAATGAATCAAATAATACTTCTGTAACTGTCTACGAATCTGTTGTTCTGGCTCAGCTATCGTAATAAAAATGGACTTAAATAGGTGGGAACTCCACACTCTTTCTTGAGAGGACCTTTAGTATGTTGAATAAGAAAAGAAGAAAAGTTCTTGGAAATCTCAATGGCATGGTCGTAAGCTGTCATACAACCTCCCCTGTGTGCTTCTCACATAGTTTGTGTATTTTGTGCAAAAAAGTTGGAAGACCATACCCATCTGTTCTGTTCCTTCAGTCAGAAGCCTTGATGTTCTTGTGCTGAAGTGTTCAATCTGTTGGAGGGTCTTTTAGTGTCTATCACAGGGAACCTTTGCCAACCCCATCCTTTTAAGCGGAAAGTAAATGTGTTTTGGAATTATATTATCAAAGCGGTATGTGGGAGGTGTGGTTGGACACTGGTTGATGTAGTATGGTAAAGGGTGAAGTATGACAATTAGAATCTATAAAACAAAGGAGTGGGAAATAAAGATTCAACGAGATAGTAAACAAACGGAATCTTTAAGGGTCGGGAATCATAGATTCGACCAGTAAACCGGAGAAACATTATTCTTACTGGGTCGTGTTTCCATGATTTGTTTCTTAAAGAAGCAATTTCATTCATGAAGGAAATTTACAAAAACAGAGGACAAAAGCCTTGATCTGAAGCATTTACAATAAACATTTCCAATTGGACTAATTATTGTTGGTATGATATTCTTGATACATTGAAGAAGACGATTAAGGAGGATTTCATGTTGGATCCTGTCCATGTAGAAATGGGGAGATTTGTGCGTCTACGTTGGATGGTGACTGTAGGTGACTTTGCTATGAACTTCGAAGATTGGAATGAAAAAAAAAAAAATTATTAGCCAGCAGAGATGTTACTTTGTAGGTGAGTAAAAGTGTTACCTTGTTTATGGAGGTTTATTCATTAATAGGTGGATGAAGGAGGTCTCAAACCATTGGAGAATAATGTGCGTATTCTATTTCTCATGCCCGTGCTATGAAAAGAAGAAACAATGCAAAACGTTCACCCTATCTTTTCTCCAATCTTCGGGGGTAGTTGCTGCTGAAAGTCAGGAAGGTTGTTTGATACAATGCCACTACAAGTGTACACACGTTACGCTCATGGCAAAAAGAAGCAGTCATGTATGGAACCCATTAGTTGAATTGTCTTCCACCTTCATTTTGATTTTTTGGTTATTCCCTTGTTTTAGATTAAGAAAATTTCTCAAATATTGGCTAATCCCTACTCTCTCCCACAACAACACTGTTAAGGGCTCAAGTCTGGGATCGAGTTATGGATCTCTCGTAAGTGGAGGTAGACGGTGTTTGTGTGGGGGAAAAAGTAGAATTCTTCTTTCGACCTATTTTGAATAATTGTAAGGCTCAAATAGAGGGAACCTTAAACCTTTGAGTTAAAGTACTCAAGACTAAATTGGAAATTTTAGGTACCATCTTCATTGATGTTTATGACTATTTGTACAAGTTGTATGATAATCATTGCTACATCAATGGAACCATGACTCAATCATGGAGGATCATCCTCCTAGAACAAAGGAAATAACTAAAAATAGAAATGAAAGTGGAGTCCTTGCAACCATTGTTATATTAATAGAGCCATGACTCAATCATGGAGGATCATCTTCTACTAACACCAGTTCTTCAGGAAAGGAGGAGAAAAAGAGGAGGAAAATCAAATGGGGAAGGTTTCTCGTCTAAGACAAGAAATGAATAGGCACAAATTGAGGAATTTCATTCTGCCAAAGCTGAGCATCAAGTAATAGATTATGGGTCAAAACCATCGAATTTAAATTTGAATTTGAATTTGAATCATCAACTACTGTATTTAGTTGAACTTCATCCTCCCAACACTCCATCTTCCATTACTTGGTGAAGAAGAGGTTAATCACTGAATTTGAGAAATTATTCAAGCGTAAGTCACCATAAACAACTCCCAGAGGATCCAAGGAAACTATATCTCCAAGCTTAAAGGAAACGTTGCGACGTTTGTTGTAATAACGTTGAACCACAAAGGTTGCCGGAAAATTTTAAGAGTATCTTAGCAGTTACTCTTAGCTTGAATGTGAGCAGTCGAACATCAATGAAGTTAAGAGTATCTTAGCAGTTACTCTTAGCTTGAATGTGAGCAGTCGAACATCAATGAAGTTAAGAGTATCTTAGCAGTTACTAATTCAACCATCGAAGTAATAATCAAATGCCTCAAGAGTGTTTTTTTCGGTACTTAAACAGTTAGTTTTTAATCGAAATCCATCCCCCATATCCTTTAATTAACTTTTGATGACTATGCTTGTATGAAACCAGTTCTCAATCTTCAGATGTAAATCACCAACCAATTGCCATTTTCCCAACACACATAAATCAATGCTTTATCAGTTATTAAGGAATTGATCTGCACTTAAATTTTAAAGTATGCTTCTGCTGAAGTTTTGATATCCTTCCAAGAAATATGCACAAACAGGTGACTTACCACCAAGAAACTTTCAAAATCCATTCTAACCACTTCATGAGGTTTGTGTAAGACTATTGGATATTTCTGATGTTGTTTGTTAGTTGTTATCTTATTCATCTATTTAATGAATTGTATTGGATGTTCTTTTTATGTTTAAAGGTAGAAATTTACAATAAAGGTATCAAATATTCATAATTTGTCGAAATATATGCATATTTAAGGGGGGGAAATTAACATGTCGTGTCCTACTTTTTTGAAAATCGATGTAATGATATTTCCATGTCGTATAGTATCCAATGTCGTGTATCTATGTCTGTGCTTCTTAGCCCACCAATTAACCCCAACTCAAATGCCAAAAAATGCTGCTCTATAGGATGGAAGTTGGTCATTTCAAGTTATTTTTCGCCAAAATTGATGCTTGAGAGACCATTTTAAAGAATTAAAAAAATGACATTGAAACCGAAGATTCGGAAGTTGTGTCAATCACACATGTTTACACTAACCAATCGAATTTGTTAATTCAGTTTCGTTGTTGTCTTATTTTTTCAAATTTTGGATTAGACCCCTATTGCTCTTAGGCCAACCTTCGGAGCCATTTACGTTTGAGCATAACATTCTTTCTTATCAAATTGTTTATCCCTAAATAACGAATAGCCGGAATCATGGCATCATTTACCCAAAGTACATTGGAGCCCCCATCTCAGAGACAAAACAAACTAGAATTATGCCAATTATGATTATCTGAATTGAAGTCTAGCTTTCTTTCCTTCTTTCTTTCTCTTTTTGTAACATTATCAATTGCTCTGAAGTTTTATATTTCCCAAGGAATTTTCATTTCTTTCTAAACTTAGTAGTGTATATGTTATCGATATATTATGATTACAAAGATGACGTTTTTGTAATACCTTTATTATTTTAGAGTTATGAAAGGGAACTTCATATCTTGGACAAATTGAATATTCAAGCCTTGTAGTTTGTGTGCTACGTACCATATGAACCAACATTTTAAGTTTTCTGTTGTTATGAGTTCCCGCAGGGTTCACTAGTTATTGGAAGTGTCAAATGCACTTTTGACATGGACAAAAGAACTTTTGACTCGAAATGTTTAAGAAAAATCATGTAGGAGAGTAATATAAAATGCTTTTTGAAAAATTGGAAAGTGCCTTGAAATACTTTGTTGTAGAGCGTTATGGTCTATGTGCTTGATTGGGAATTCCTTCCAAAGTACTTTTAAGAATGCATAACCAATTTTACTTTACTTTTTTAAAACCATTTCCAAATACGCTTTTTAAGCATTTGTTAGTGAGTTAGAACATAATATGGGTAACGTAGGAGACATCTCTACTTTTCCCCTCGGGAATCCATAGAATTTACTGTTGCTTAGTTTTCAATTTACCTCTGATCATCAAATGAAATGTGAATAACCTGTCCTCCTCTCTTTGAAACAAGGGACGTTTCTGGTTCTGTCGGTGCTTGAAACAATTTAGTTTTCTCCATATTACTATATCTCTAGAGTCAATAATTTTATATGAGGAACTATTGAAGTCAATCACTTGCTGCCGTTAACTCTTTAGCTTTCTGTTGAGGTCTATTATGTGGAGGTATTCAAATTGGATCAATGATTGATTTCTAGGTTTCGTCGTAAACCTAATTGGTTACTTCTAATAGTTCAAGTGAATCAAGGCTAATAGTTCAAGTGAATCAAGGATAAAGTAGCTTCAAGTTTGTTTATGAAACATTTTTTCAATCTTTCTTATTGATTTTCAAGCTTGAGGAAAACTTCAATTGCTCAACGGTTAAAGAATCAGCTAAACGAAGTTATCTGCTTTTGAGTTTCCTAGTAGGACTTATGTTTCTAGTATCATTGCAGGCGGCTAAGGAGTTCGAGTCCGAGCTGAAGAAAGAGCCCGAGTCAATCGGAGAGACCGCAGTAGAAAAGCCTACATCAGTAGATGATGAGGAGAAGCAAGATTTGAAGGTATCAAACCAAAAGGAGAGTGTATGA

mRNA sequence

ATGGTAATCTCATCTGTAACTTTATCCTTCACATCTTCCATTCCCAGGCTTCCATCGTTTTCCCCTCCGTTTTCCTCCTCCAAATCATCCTTCTTCGCCAACAATGTCACCGCCAATTCCTTCAACAAAGGCGACCATAGCCATTCTTCGCTATTGCGAACCACCAGGTCCAGAAAGACGATGGATAGAGCTCATAAGGGTCTCACTTGTAACGCTCTGTTTGGACTTGGAGTGCCTGAGCTTGTTGTAATTGCCGGCGTCGCCGCTCTGGTTTTTGGCCCCAAGAAGTTGCCTGAAGTCGGGAAGAGTATTGGAAAAACGGTCAAGAGCTTCCAACAGGCGGCTAAGGAGTTCGAGTCCGAGCTGAAGAAAGAGCCCGAGTCAATCGGAGAGACCGCAGTAGAAAAGCCTACATCAGTAGATGATGAGGAGAAGCAAGATTTGAAGGTATCAAACCAAAAGGAGAGTGTATGA

Coding sequence (CDS)

ATGGTAATCTCATCTGTAACTTTATCCTTCACATCTTCCATTCCCAGGCTTCCATCGTTTTCCCCTCCGTTTTCCTCCTCCAAATCATCCTTCTTCGCCAACAATGTCACCGCCAATTCCTTCAACAAAGGCGACCATAGCCATTCTTCGCTATTGCGAACCACCAGGTCCAGAAAGACGATGGATAGAGCTCATAAGGGTCTCACTTGTAACGCTCTGTTTGGACTTGGAGTGCCTGAGCTTGTTGTAATTGCCGGCGTCGCCGCTCTGGTTTTTGGCCCCAAGAAGTTGCCTGAAGTCGGGAAGAGTATTGGAAAAACGGTCAAGAGCTTCCAACAGGCGGCTAAGGAGTTCGAGTCCGAGCTGAAGAAAGAGCCCGAGTCAATCGGAGAGACCGCAGTAGAAAAGCCTACATCAGTAGATGATGAGGAGAAGCAAGATTTGAAGGTATCAAACCAAAAGGAGAGTGTATGA

Protein sequence

MVISSVTLSFTSSIPRLPSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRKTMDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV

Homology

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BLAST of Carg16487-RA vs. NCBI nr
Match: XP_023529222.1 (sec-independent protein translocase protein TATA, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 282.0 bits (720), Expect = 1.3e-72
Identity = 154/157 (98.09%), Postives = 154/157 (98.09%), Query Frame = 0


Query: 1   MVISSVTLSFTSSIPRLPSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRKT 60
           MVISS TLSFTSSIPRLPSFSPPFSSSKSSFFANN TANSFNKGDHSHS LLRTTRSRKT
Sbjct: 1   MVISSATLSFTSSIPRLPSFSPPFSSSKSSFFANNATANSFNKGDHSHSLLLRTTRSRKT 60

Query: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120
           MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES
Sbjct: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120

Query: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV
Sbjct: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 157

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BLAST of Carg16487-RA vs. NCBI nr
Match: XP_022969040.1 (sec-independent protein translocase protein TATA, chloroplastic [Cucurbita maxima])

HSP 1 Score: 280.4 bits (716), Expect = 3.7e-72
Identity = 153/157 (97.45%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 1   MVISSVTLSFTSSIPRLPSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRKT 60
           MVISS TLSFTSSIPRLPSFSPP SSSKSSFFANN TANSFNKGDHSHSSLLRTTRSRKT
Sbjct: 1   MVISSATLSFTSSIPRLPSFSPPLSSSKSSFFANNATANSFNKGDHSHSSLLRTTRSRKT 60

Query: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120
           MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES
Sbjct: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120

Query: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           ELKKEPESIGETAVEKPTSVDDEEKQDLK SNQKESV
Sbjct: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKASNQKESV 157

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BLAST of Carg16487-RA vs. NCBI nr
Match: XP_022932561.1 (sec-independent protein translocase protein TATA, chloroplastic [Cucurbita moschata])

HSP 1 Score: 279.6 bits (714), Expect = 6.3e-72
Identity = 152/157 (96.82%), Postives = 153/157 (97.45%), Query Frame = 0


Query: 1   MVISSVTLSFTSSIPRLPSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRKT 60
           MVISS TLSFTSSIPRLPSFSPPFSSSKSSFFANN TANSFNKGDHSHS LLRTTRSRKT
Sbjct: 1   MVISSATLSFTSSIPRLPSFSPPFSSSKSSFFANNATANSFNKGDHSHSLLLRTTRSRKT 60

Query: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120
           MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES
Sbjct: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120

Query: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           ELKKEPESIGETAVEKP S+DDEEKQDLKVSNQKESV
Sbjct: 121 ELKKEPESIGETAVEKPASIDDEEKQDLKVSNQKESV 157

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BLAST of Carg16487-RA vs. NCBI nr
Match: XP_008450744.1 (PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Cucumis melo] >XP_008450746.1 PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Cucumis melo])

HSP 1 Score: 222.6 bits (566), Expect = 9.2e-55
Identity = 126/158 (79.75%), Postives = 136/158 (86.08%), Query Frame = 0


Query: 1   MVISSVTLSFTSSIPRL-PSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRK 60
           MVIS+ TLSFTSSIP+L PS SP FSSSKS+FFANN T + F  GDH+HSSLLR T  R 
Sbjct: 1   MVISTPTLSFTSSIPKLPPSLSPSFSSSKSAFFANNATVSFFTNGDHNHSSLLRLTSFRT 60

Query: 61  TMDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120
           T    HKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE
Sbjct: 61  TTKTTHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120

Query: 121 SELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           SELKKEPE   ET+VEKPTS + E++QDLKVSNQKE+V
Sbjct: 121 SELKKEPEPTEETSVEKPTSTEAEKRQDLKVSNQKETV 158

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BLAST of Carg16487-RA vs. NCBI nr
Match: XP_004135654.1 (PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Cucumis sativus] >KGN66148.1 hypothetical protein Csa_1G573670 [Cucumis sativus])

HSP 1 Score: 215.3 bits (547), Expect = 1.5e-52
Identity = 124/158 (78.48%), Postives = 132/158 (83.54%), Query Frame = 0


Query: 1   MVISSVTLSFTSSIPRL-PSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRK 60
           MVISS TLSFTSSIP+L PS S    SSKS+FFANN T + F  GDH+HSSLLR T  R 
Sbjct: 1   MVISSPTLSFTSSIPKLPPSLSXXXXSSKSAFFANNATTSFFTYGDHNHSSLLRLTSFRT 60

Query: 61  TMDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120
           T    HKG TCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE
Sbjct: 61  TTKTTHKGFTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120

Query: 121 SELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           SELKKEPE   ET+VEKPTS + EE+QDLKVSNQKE+V
Sbjct: 121 SELKKEPEPTEETSVEKPTSTEAEERQDLKVSNQKETV 158

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BLAST of Carg16487-RA vs. TAIR10
Match: AT5G28750.1 (Bacterial sec-independent translocation protein mttA/Hcf106)

HSP 1 Score: 116.3 bits (290), Expect = 1.7e-26
Identity = 74/117 (63.25%), Postives = 84/117 (71.79%), Query Frame = 0


Query: 18  PSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRKTMDRAHKGLTCNALFGLG 77
           P   P  SSS+SSFF+N  T  +      S  ++ R  R   T     K LTCNALFGLG
Sbjct: 13  PVSLPLLSSSRSSFFSNCFTVTT-RPNTRSLVAIGRRIRQEPT----RKPLTCNALFGLG 72

Query: 78  VPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEP-ESIGETA 134
           VPEL VIAGVAAL+FGPKKLPE+GKSIGKTVKSFQQAAKEFESELK EP ES+ E++
Sbjct: 73  VPELAVIAGVAALLFGPKKLPEIGKSIGKTVKSFQQAAKEFESELKTEPEESVAESS 124

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BLAST of Carg16487-RA vs. TAIR10
Match: AT5G52440.1 (Bacterial sec-independent translocation protein mttA/Hcf106)

HSP 1 Score: 52.8 bits (125), Expect = 2.3e-07
Identity = 28/61 (45.90%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 72  ALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSF-------QQAAKEFESELKK 126
           +LFG+G PE +VI  VA LVFGPK L EV +++GKT+++F       Q  +++F+S L++
Sbjct: 85  SLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRTFQPTIRELQDVSRDFKSTLER 144

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BLAST of Carg16487-RA vs. Swiss-Prot
Match: sp|Q9XH46|TATA_PEA (Sec-independent protein translocase protein TATA, chloroplastic OS=Pisum sativum OX=3888 GN=TATA PE=1 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.5e-27
Identity = 88/155 (56.77%), Postives = 106/155 (68.39%), Query Frame = 0


Query: 6   VTLSFTSS--IP-RLPSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRKTMD 65
           +TLS +SS  IP RLP+         SS ++N     SF   + + SSLL      KT  
Sbjct: 3   ITLSISSSSVIPTRLPN---------SSCYSN----LSFLSSNSNTSSLLLKKARIKT-- 62

Query: 66  RAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESEL 125
           R  KG TCNA FGLGVPELVVIAGVAALVFGPKKLPEVG+SIG+TVKSFQQAAKEFE+EL
Sbjct: 63  RTTKGFTCNAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFETEL 122

Query: 126 KKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           KKEP    E +V       ++EKQ++KVS+ K++V
Sbjct: 123 KKEPNPTEEISV-----ASEQEKQEIKVSSTKDNV 137

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BLAST of Carg16487-RA vs. Swiss-Prot
Match: sp|Q9LKU2|TATA_ARATH (Sec-independent protein translocase protein TATA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TATA PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.0e-25
Identity = 74/117 (63.25%), Postives = 84/117 (71.79%), Query Frame = 0


Query: 18  PSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRKTMDRAHKGLTCNALFGLG 77
           P   P  SSS+SSFF+N  T  +      S  ++ R  R   T     K LTCNALFGLG
Sbjct: 13  PVSLPLLSSSRSSFFSNCFTVTT-RPNTRSLVAIGRRIRQEPT----RKPLTCNALFGLG 72

Query: 78  VPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEP-ESIGETA 134
           VPEL VIAGVAAL+FGPKKLPE+GKSIGKTVKSFQQAAKEFESELK EP ES+ E++
Sbjct: 73  VPELAVIAGVAALLFGPKKLPEIGKSIGKTVKSFQQAAKEFESELKTEPEESVAESS 124

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BLAST of Carg16487-RA vs. Swiss-Prot
Match: sp|Q9XFJ8|TATA_MAIZE (Sec-independent protein translocase protein TATA, chloroplastic OS=Zea mays OX=4577 GN=TATA PE=1 SV=2)

HSP 1 Score: 106.3 bits (264), Expect = 3.1e-22
Identity = 61/90 (67.78%), Postives = 71/90 (78.89%), Query Frame = 0


Query: 68  LTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEP- 127
           L C  LFGLGVPEL VIAGVAALVFGPK+LPE+G+SIGKTVKSFQQAAKEFE+ELKKEP 
Sbjct: 80  LGCKCLFGLGVPELAVIAGVAALVFGPKQLPEIGRSIGKTVKSFQQAAKEFETELKKEPG 139

Query: 128 ESIGETAVEKPTSVDDEEKQDLKVSNQKES 157
           E   +     PT+V   E++ L+ S+ KES
Sbjct: 140 EGGDQPPPATPTAVSGGEEKGLEASSSKES 169

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BLAST of Carg16487-RA vs. Swiss-Prot
Match: sp|Q75GK3|TATA_ORYSJ (Sec-independent protein translocase protein TATA, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=TATA PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.3e-19
Identity = 48/54 (88.89%), Postives = 52/54 (96.30%), Query Frame = 0


Query: 70  CNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELK 124
           C  LFGLGVPELVVIAGVAALVFGPK+LPE+G+SIGKTVKSFQQAAKEFE+ELK
Sbjct: 81  CKCLFGLGVPELVVIAGVAALVFGPKQLPEIGRSIGKTVKSFQQAAKEFETELK 134

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BLAST of Carg16487-RA vs. Swiss-Prot
Match: sp|Q31RR1|TATA_SYNE7 (Sec-independent protein translocase protein TatA OS=Synechococcus elongatus (strain PCC 7942) OX=1140 GN=tatA PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-12
Identity = 41/87 (47.13%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 74  FGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKE----PESI 133
           FG+G+PE++VI  +A LVFGPKKLPE+G+S+GK ++ FQ A++EFESE+K+E    P + 
Sbjct: 4   FGIGLPEMLVILAIALLVFGPKKLPEIGRSLGKALRGFQDASREFESEIKREIDRTPATP 63

Query: 134 GETAVEKPTSVDDEEKQDLKVSNQKES 157
            E  VE P  +D    + + V  Q E+
Sbjct: 64  AEATVEPPV-LDSAPTEAVTVEKQTET 89

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BLAST of Carg16487-RA vs. TrEMBL
Match: tr|A0A1S3BPB0|A0A1S3BPB0_CUCME (sec-independent protein translocase protein TATA, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492233 PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 6.1e-55
Identity = 126/158 (79.75%), Postives = 136/158 (86.08%), Query Frame = 0


Query: 1   MVISSVTLSFTSSIPRL-PSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRK 60
           MVIS+ TLSFTSSIP+L PS SP FSSSKS+FFANN T + F  GDH+HSSLLR T  R 
Sbjct: 1   MVISTPTLSFTSSIPKLPPSLSPSFSSSKSAFFANNATVSFFTNGDHNHSSLLRLTSFRT 60

Query: 61  TMDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120
           T    HKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE
Sbjct: 61  TTKTTHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120

Query: 121 SELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           SELKKEPE   ET+VEKPTS + E++QDLKVSNQKE+V
Sbjct: 121 SELKKEPEPTEETSVEKPTSTEAEKRQDLKVSNQKETV 158

[Close]

BLAST of Carg16487-RA vs. TrEMBL
Match: tr|A0A0A0LWL1|A0A0A0LWL1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573670 PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 9.7e-53
Identity = 124/158 (78.48%), Postives = 132/158 (83.54%), Query Frame = 0


Query: 1   MVISSVTLSFTSSIPRL-PSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRK 60
           MVISS TLSFTSSIP+L PS S    SSKS+FFANN T + F  GDH+HSSLLR T  R 
Sbjct: 1   MVISSPTLSFTSSIPKLPPSLSXXXXSSKSAFFANNATTSFFTYGDHNHSSLLRLTSFRT 60

Query: 61  TMDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120
           T    HKG TCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE
Sbjct: 61  TTKTTHKGFTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120

Query: 121 SELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           SELKKEPE   ET+VEKPTS + EE+QDLKVSNQKE+V
Sbjct: 121 SELKKEPEPTEETSVEKPTSTEAEERQDLKVSNQKETV 158

[Close]

BLAST of Carg16487-RA vs. TrEMBL
Match: tr|A0A2P4NCQ6|A0A2P4NCQ6_QUESU (Sec-independent protein translocase protein tata, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_61474 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.4e-43
Identity = 112/159 (70.44%), Postives = 130/159 (81.76%), Query Frame = 0


Query: 1   MVISSVTLS-FTSSIPRLPSFSPPFSSSKSSFFANNVTANSFNKGD-HSHSSLLRTTRSR 60
           M ISS+ LS  ++SIPR+   S PFSSSKS+FF +N T   FNK   +S++ +L    +R
Sbjct: 1   MEISSICLSPVSTSIPRVTPPSLPFSSSKSTFFTSNATLTLFNKTKANSNTLVLGGAATR 60

Query: 61  KTMDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEF 120
             ++RA KGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEF
Sbjct: 61  IRVERARKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEF 120

Query: 121 ESELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           ESELKKEP+SI E  VEKPT+V +EEKQD+KVS+ KESV
Sbjct: 121 ESELKKEPDSITENPVEKPTAVSEEEKQDIKVSSTKESV 159

[Close]

BLAST of Carg16487-RA vs. TrEMBL
Match: tr|A0A2I4FF25|A0A2I4FF25_9ROSI (sec-independent protein translocase protein TATA, chloroplastic OS=Juglans regia OX=51240 GN=LOC108998206 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 6.5e-41
Identity = 106/157 (67.52%), Postives = 121/157 (77.07%), Query Frame = 0


Query: 1   MVISSVTLSFTSSIPRLPSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSLLRTTRSRKT 60
           M +SSVTL F SS  R+P  S PFSSS S+F  N  T+   NK  H  ++L+  +R+R  
Sbjct: 1   MEVSSVTLCF-SSTSRMPPPSLPFSSSNSTFLTNFATSTFLNKTKHKSNALV-ASRTRTR 60

Query: 61  MDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120
            D A KGLTCNALFGLGVPELVVIAGV ALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES
Sbjct: 61  TDPAKKGLTCNALFGLGVPELVVIAGVVALVFGPKKLPEVGKSIGKTVKSFQQAAKEFES 120

Query: 121 ELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           ELKKEP+S  E   EKP S+ +EEKQD+KVS+ KE+V
Sbjct: 121 ELKKEPDSTIEAPTEKPASLSEEEKQDIKVSSSKENV 155

[Close]

BLAST of Carg16487-RA vs. TrEMBL
Match: tr|A9P9F0|A9P9F0_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 PE=2 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 5.7e-37
Identity = 105/158 (66.46%), Postives = 122/158 (77.22%), Query Frame = 0


Query: 1   MVISSVTLSFTSSIPRLPSFSPPFSSSKSSFFANNVTANSFNKGDHSHSSL-LRTTRSRK 60
           M ISS+TLSF    P L     PFSSS+S+FF  N TA  FNK   S++SL L  TRSR 
Sbjct: 1   MEISSITLSFPKPPPCL-----PFSSSQSTFF--NTTA-FFNKSSKSYNSLVLGKTRSRS 60

Query: 61  TMDRAHKGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFE 120
              RA KGLTCNALFGLGVPELVVIAGVA L+FGPK+LPEVG+SIGKTVKSFQQAAKEFE
Sbjct: 61  --QRAKKGLTCNALFGLGVPELVVIAGVATLLFGPKQLPEVGRSIGKTVKSFQQAAKEFE 120

Query: 121 SELKKEPESIGETAVEKPTSVDDEEKQDLKVSNQKESV 158
           SELKKEP+S  +T  E+PT++ +E+K D +VS+ KESV
Sbjct: 121 SELKKEPDSTSDTPGEQPTTISEEKKHDSEVSSSKESV 148

The following BLAST results are available for this feature:

BLAST of Carg16487-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023529222.1	1.3e-72	98.09	sec-independent protein translocase protein TATA, chloroplastic [Cucurbita pepo ...	[more]
XP_022969040.1	3.7e-72	97.45	sec-independent protein translocase protein TATA, chloroplastic [Cucurbita maxim...	[more]
XP_022932561.1	6.3e-72	96.82	sec-independent protein translocase protein TATA, chloroplastic [Cucurbita mosch...	[more]
XP_008450744.1	9.2e-55	79.75	PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Cucu...	[more]
XP_004135654.1	1.5e-52	78.48	PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Cucu...	[more]

BLAST of Carg16487-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G28750.1	1.7e-26	63.25	Bacterial sec-independent translocation protein mttA/Hcf106	[more]
AT5G52440.1	2.3e-07	45.90	Bacterial sec-independent translocation protein mttA/Hcf106	[more]

BLAST of Carg16487-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9XH46\|TATA_PEA	5.5e-27	56.77	Sec-independent protein translocase protein TATA, chloroplastic OS=Pisum sativum...	[more]
sp\|Q9LKU2\|TATA_ARATH	3.0e-25	63.25	Sec-independent protein translocase protein TATA, chloroplastic OS=Arabidopsis t...	[more]
sp\|Q9XFJ8\|TATA_MAIZE	3.1e-22	67.78	Sec-independent protein translocase protein TATA, chloroplastic OS=Zea mays OX=4...	[more]
sp\|Q75GK3\|TATA_ORYSJ	3.3e-19	88.89	Sec-independent protein translocase protein TATA, chloroplastic OS=Oryza sativa ...	[more]
sp\|Q31RR1\|TATA_SYNE7	1.7e-12	47.13	Sec-independent protein translocase protein TatA OS=Synechococcus elongatus (str...	[more]

BLAST of Carg16487-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BPB0\|A0A1S3BPB0_CUCME	6.1e-55	79.75	sec-independent protein translocase protein TATA, chloroplastic OS=Cucumis melo ...	[more]
tr\|A0A0A0LWL1\|A0A0A0LWL1_CUCSA	9.7e-53	78.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G573670 PE=3 SV=1	[more]
tr\|A0A2P4NCQ6\|A0A2P4NCQ6_QUESU	1.4e-43	70.44	Sec-independent protein translocase protein tata, chloroplastic OS=Quercus suber...	[more]
tr\|A0A2I4FF25\|A0A2I4FF25_9ROSI	6.5e-41	67.52	sec-independent protein translocase protein TATA, chloroplastic OS=Juglans regia...	[more]
tr\|A9P9F0\|A9P9F0_POPTR	5.7e-37	66.46	Uncharacterized protein OS=Populus trichocarpa OX=3694 PE=2 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005886	plasma membrane
GO:0016021	integral component of membrane
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0008565	protein transporter activity

Vocabulary: **Biological Process**
Term	Definition
GO:0015031	protein transport
GO:0009306	protein secretion

Vocabulary: **INTERPRO**
Term	Definition
IPR006312	TatA/E
IPR003369	TatA/B/E
IPR003998	TatB-like

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009306	protein secretion
biological_process	GO:0015031	protein transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0008565	protein transporter activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg16487	Carg16487	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg16487-RA.exon.1	Carg16487-RA.exon.1	exon
Carg16487-RA.exon.2	Carg16487-RA.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg16487-RA.CDS.1	Carg16487-RA.CDS.1	CDS
Carg16487-RA.CDS.2	Carg16487-RA.CDS.2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg16487-RA	Carg16487-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003998	Twin-arginine translocation protein TatB-like	PRINTS	PR01506	TATBPROTEIN	coord: 73..93 score: 35.53 coord: 93..112 score: 27.65
IPR003369	Sec-independent protein translocase protein TatA/B/E	PFAM	PF02416	MttA_Hcf106	coord: 76..125 e-value: 7.5E-19 score: 66.7
IPR006312	Sec-independent protein translocase protein TatA/E	TIGRFAM	TIGR01411	TIGR01411	coord: 75..121 e-value: 5.0E-20 score: 68.8
IPR006312	Sec-independent protein translocase protein TatA/E	HAMAP	MF_00236	TatA_E	coord: 73..156 score: 18.54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..157
None	No IPR available	PANTHER	PTHR33162	FAMILY NOT NAMED	coord: 14..137