Carg15437 (gene) Silver-seed gourd

Overview
NameCarg15437
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionDNA-directed RNA polymerases I, II, and III subunit RPABC3
LocationCucurbita_argyrosperma_scaffold_069 : 173847 .. 176001 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTTAGGGTTTTTATTGTTCCATTTTCCTGTTTCATATTCGTTCACTCCTCAGTTATCATCTCCCGTTTGTAAACCCTTTCTAAACCTTCGTAGCGCTCGATTTCAAGTTGCAGACCTCAATTCAGGTATTTTGCTTAATTTCTCCTTGATCTTGCTTGAATATCTGTTCTTTAATTCCTTTTGTTTACTATATCTCGATTAACTTCTTGACCACTACAAATGTCTTCTCGCTCCATTTCGCTATTAGATGCGAACCTGTGAAATCTCCAACCAAGCCCTAACTTAGTCGGCAGTCTCCTCTTTTGAATTTTGTTTTTCGCGAATCTAATGCTTTCAGTTGCTAACTTAACGCATTGTTTTCTGTTTGTTTTCTTTGTTCTTTGCTGATTTTGTTTTGTTATTTGATGGGCATACTCTTATTTATAACTCTGTTTGTTAACTTCCATTATCTCCCTGTTAATTTTCTGGGTTGCTTTAACCTTTGTGAAGCAGGGTTTCTGTTGTAAGGATGGTTGAGCTTCTCTTTGATGATATCTTTAAGATCGAGCGGTTAAACCCCGATGGCAAAAAGTTTGATAAAGGTGCGTTTTTTTTTTTTTGTAAAATAGTTGCTCGCCCTTTTGCATGCAGATTCTTCTTTTACCTCTTTGATGTGCATAGAAGTTGTGGAGTTTTCATTTCCCCTAGGTTGTCATCCGGAATAGTATAAATGTTCTAAGAACTTTTCAACACAGTTAGGCAAATGACATTGGTGTTTTCACAATCTGTCCAACAGTTACTCGAATCGAGGCAAAGAGCGAGAAGTTTGACATGTTCATGCATCTGGACATCAATACAGAAATATACAACTTGAAAGAAGGTGAGAAGTTTTCGATGGCGCTGGCTCCAACTCTGAATCTTGACGGAACCCCTGACACAGGCTATTTTCTTCAGGTAACTTGTTCTTCCAGTGATTTATAGTCTGTAACAGGAAACTTTCAATCAATTAGGGAATATTGGGTTTCCATAGTTTTTGCATATGTCTATTCATTGTCATGACTGGTTTGGTTGTTGTCTGACGACTATATTTGTGTCTTCCTCTGTTCAATTATTAGTTTGGTCTGAGGCTTGAATTGTTATTCTGTGTTACAGGGCAATAGGAAGTCGCTTGCTGACAGATATGAATATGTCATGCACGGGAAGCTGTTTAGAATATCAGAAAGTTCTGGGCATGGCGGTAAAGCGTACGTGTTATAACTTCTCTAAACAATTTTGTTCTCAAATACTACAATTCTATTGCATACCATGAACGAAGCAAGAGCTTGACGTTCCATCATTTATATTTTATCTATGTTTGAGCAAGAATGTGTCATAGAGCATCTTCTCCTGTCTGTAATGGCTACCATAAATGGCTATTATGGTGATAAATCCATTTTAGTTTCTTTTTCTGAACAGTTTACGAACGTACATAATGCATATTTTCCAGTTGAATTTTTATCTTGAATAGAGTATTTCATCTGAATCCAGGGAAATAGATGCTTCTTTTGGTGGGCTCCTGATGATGCTGAAGGGTGATCCCTCACATTGCAGCAAGTTTGAACTTGACCAGAGGCTGTTTCTTCTCATCAGGAAGGTGTGAAGCCCTGTCATTTGAATTGAACTCTGATGACTTTTACTATGAATGCTCCCGACATTGCCTGTCTCTCTAGAACATATAAGAACTGCGAACGTGTAGAAATCTATGTATTCTGAGCGTCGAATTGAGATCTGTATTTGATGAAAGATTAGGCGTGTGATCTTATCTTTTGAACGTTTTGATCATCGCTTCGATCTTGCCAATAATGTCATGAACCATGATCACAATATCACTCTCGTTTTCCATGCCTTTTGGTAGTTGAATTATCATAATCGAGTTCTTATTACACGCCTGAGGGAGAGCTAGGGATGGTCATTGTTGTGGTGCCTTCTTGAGGTTCGTGTGAACGACTAGTAGCACAAAGGTTTTTTATTTCAAAGAGAGAACTAAGAAAGATAGGGATCAAGCATGGTAGTTGTTTTGAGAATGTTGTGTAGGTTGTTGAGTTGGGTCGGTTGATATCAACTTAGGCTTTGCTTTCAGTATGACGATGACGATGAGTTTGATATCAAATAACATGATGACGATGAGTTTGATA

mRNA sequence

AATTTAGGGTTTTTATTGTTCCATTTTCCTGTTTCATATTCGTTCACTCCTCAGTTATCATCTCCCGTTTGTAAACCCTTTCTAAACCTTCGTAGCGCTCGATTTCAAGTTGCAGACCTCAATTCAGGGTTTCTGTTGTAAGGATGGTTGAGCTTCTCTTTGATGATATCTTTAAGATCGAGCGGTTAAACCCCGATGGCAAAAAGTTTGATAAAGTTACTCGAATCGAGGCAAAGAGCGAGAAGTTTGACATGTTCATGCATCTGGACATCAATACAGAAATATACAACTTGAAAGAAGGTGAGAAGTTTTCGATGGCGCTGGCTCCAACTCTGAATCTTGACGGAACCCCTGACACAGGCTATTTTCTTCAGGGCAATAGGAAGTCGCTTGCTGACAGATATGAATATGTCATGCACGGGAAGCTGTTTAGAATATCAGAAAGTTCTGGGCATGGCGGTAAAGCGTACGTGGAAATAGATGCTTCTTTTGGTGGGCTCCTGATGATGCTGAAGGGTGATCCCTCACATTGCAGCAAGTTTGAACTTGACCAGAGGCTGTTTCTTCTCATCAGGAAGGTGTGAAGCCCTGTCATTTGAATTGAACTCTGATGACTTTTACTATGAATGCTCCCGACATTGCCTGTCTCTCTAGAACATATAAGAACTGCGAACGTGTAGAAATCTATGTATTCTGAGCGTCGAATTGAGATCTGTATTTGATGAAAGATTAGGCGTGTGATCTTATCTTTTGAACGTTTTGATCATCGCTTCGATCTTGCCAATAATGTCATGAACCATGATCACAATATCACTCTCGTTTTCCATGCCTTTTGGTAGTTGAATTATCATAATCGAGTTCTTATTACACGCCTGAGGGAGAGCTAGGGATGGTCATTGTTGTGGTGCCTTCTTGAGGTTCGTGTGAACGACTAGTAGCACAAAGGTTTTTTATTTCAAAGAGAGAACTAAGAAAGATAGGGATCAAGCATGGTAGTTGTTTTGAGAATGTTGTGTAGGTTGTTGAGTTGGGTCGGTTGATATCAACTTAGGCTTTGCTTTCAGTATGACGATGACGATGAGTTTGATATCAAATAACATGATGACGATGAGTTTGATA

Coding sequence (CDS)

ATGGTTGAGCTTCTCTTTGATGATATCTTTAAGATCGAGCGGTTAAACCCCGATGGCAAAAAGTTTGATAAAGTTACTCGAATCGAGGCAAAGAGCGAGAAGTTTGACATGTTCATGCATCTGGACATCAATACAGAAATATACAACTTGAAAGAAGGTGAGAAGTTTTCGATGGCGCTGGCTCCAACTCTGAATCTTGACGGAACCCCTGACACAGGCTATTTTCTTCAGGGCAATAGGAAGTCGCTTGCTGACAGATATGAATATGTCATGCACGGGAAGCTGTTTAGAATATCAGAAAGTTCTGGGCATGGCGGTAAAGCGTACGTGGAAATAGATGCTTCTTTTGGTGGGCTCCTGATGATGCTGAAGGGTGATCCCTCACATTGCAGCAAGTTTGAACTTGACCAGAGGCTGTTTCTTCTCATCAGGAAGGTGTGA

Protein sequence

MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINTEIYNLKEGEKFSMALAPTLNLDGTPDTGYFLQGNRKSLADRYEYVMHGKLFRISESSGHGGKAYVEIDASFGGLLMMLKGDPSHCSKFELDQRLFLLIRKV
Homology
[Close]
BLAST of Carg15437 vs. NCBI nr
Match: XP_022932746.1 (DNA-directed RNA polymerases II and V subunit 8A-like [Cucurbita moschata] >XP_022932747.1 DNA-directed RNA polymerases II and V subunit 8A-like [Cucurbita moschata] >XP_023538873.1 DNA-directed RNA polymerases II and V subunit 8A-like [Cucurbita pepo subsp. pepo] >XP_023538874.1 DNA-directed RNA polymerases II and V subunit 8A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 260.8 bits (665), Expect = 2.8e-66
Identity = 144/146 (98.63%), Postives = 144/146 (98.63%), Query Frame = 0 

Query: 1   MVELLFDDIFKIERLNPDGKKFDKVTXXXXXXXXXXXXXHLDINTEIYNLKEGEKFSMAL 60
           MVELLFDDIFKIERLNPDGKKFDKVTXXXXXXXXXXXXXHLDINTEIYNLKEGEKFSMAL
Sbjct: 1   MVELLFDDIFKIERLNPDGKKFDKVTXXXXXXXXXXXXXHLDINTEIYNLKEGEKFSMAL 60

Query: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMHGKLFRISESSGHGGKAYVEIDASFGGLL 120
           APTLNLDGTPDTGYFLQGNRKSLADRYEYVMHGKLFRISESSGHGGKA  EIDASFGGLL
Sbjct: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMHGKLFRISESSGHGGKA--EIDASFGGLL 120

Query: 121 MMLKGDPSHCSKFELDQRLFLLIRKV 147
           MMLKGDPSHCSKFELDQRLFLLIRKV
Sbjct: 121 MMLKGDPSHCSKFELDQRLFLLIRKV 144

[Close]
BLAST of Carg15437 vs. NCBI nr
Match: XP_022972118.1 (DNA-directed RNA polymerases II and V subunit 8A-like [Cucurbita maxima] >XP_022972119.1 DNA-directed RNA polymerases II and V subunit 8A-like [Cucurbita maxima])

HSP 1 Score: 257.3 bits (656), Expect = 3.1e-65
Identity = 143/146 (97.95%), Postives = 143/146 (97.95%), Query Frame = 0 

Query: 1   MVELLFDDIFKIERLNPDGKKFDKVTXXXXXXXXXXXXXHLDINTEIYNLKEGEKFSMAL 60
           MVELLFDDIFKIERLNPDGKKFDKVTXXXXXXXXXXXXXHLDINTEIYNLKEGEKFSMAL
Sbjct: 1   MVELLFDDIFKIERLNPDGKKFDKVTXXXXXXXXXXXXXHLDINTEIYNLKEGEKFSMAL 60

Query: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMHGKLFRISESSGHGGKAYVEIDASFGGLL 120
           APTLNLDGTPDTGYFLQGNRKSLADRYEYVMHGKLFRISESSGH GKA  EIDASFGGLL
Sbjct: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMHGKLFRISESSGHVGKA--EIDASFGGLL 120

Query: 121 MMLKGDPSHCSKFELDQRLFLLIRKV 147
           MMLKGDPSHCSKFELDQRLFLLIRKV
Sbjct: 121 MMLKGDPSHCSKFELDQRLFLLIRKV 144

[Close]
BLAST of Carg15437 vs. NCBI nr
Match: XP_022145813.1 (DNA-directed RNA polymerases II and V subunit 8A-like isoform X2 [Momordica charantia] >XP_022145814.1 DNA-directed RNA polymerases II and V subunit 8A-like isoform X2 [Momordica charantia] >XP_022145815.1 DNA-directed RNA polymerases II and V subunit 8A-like isoform X2 [Momordica charantia])

HSP 1 Score: 255.0 bits (650), Expect = 1.6e-64
Identity = 140/146 (95.89%), Postives = 143/146 (97.95%), Query Frame = 0 

Query: 1   MVELLFDDIFKIERLNPDGKKFDKVTXXXXXXXXXXXXXHLDINTEIYNLKEGEKFSMAL 60
           MVELLFDDIFKIERLNPDGKKFDKVTXXXXXXXXXXXXXHLDINTEIYNLKEGEKFSMAL
Sbjct: 1   MVELLFDDIFKIERLNPDGKKFDKVTXXXXXXXXXXXXXHLDINTEIYNLKEGEKFSMAL 60

Query: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMHGKLFRISESSGHGGKAYVEIDASFGGLL 120
           APTLNLDGTPDTGY+LQGNRKSLADRYEY+M GKLFRISESSGHGG+A  EIDASFGGLL
Sbjct: 61  APTLNLDGTPDTGYYLQGNRKSLADRYEYIMQGKLFRISESSGHGGRA--EIDASFGGLL 120

Query: 121 MMLKGDPSHCSKFELDQRLFLLIRKV 147
           MMLKGDPSHCSKFELDQRLFLLIRKV
Sbjct: 121 MMLKGDPSHCSKFELDQRLFLLIRKV 144

[Close]
BLAST of Carg15437 vs. NCBI nr
Match: XP_004152137.1 (PREDICTED: DNA-directed RNA polymerases II and V subunit 8A [Cucumis sativus] >KGN53006.1 hypothetical protein Csa_4G011050 [Cucumis sativus])

HSP 1 Score: 233.0 bits (593), Expect = 6.3e-58
Identity = 133/146 (91.10%), Postives = 133/146 (91.10%), Query Frame = 0 

Query: 1   MVELLFDDIFKIERLNPDGKKFDKVTXXXXXXXXXXXXXHLDINTEIYNLKEGEKFSMAL 60
           MVELLFDDIFKIERLNPDGKKFDK  XXXXXXXXXXXXX       IY LKEGEKFSMAL
Sbjct: 1   MVELLFDDIFKIERLNPDGKKFDKXXXXXXXXXXXXXXXXXXXXXXIYPLKEGEKFSMAL 60

Query: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMHGKLFRISESSGHGGKAYVEIDASFGGLL 120
           APTLNLDGTPDTGYFLQGNRKSLADRYEYVM GKLFRISESSGHGGKA  EIDASFGGLL
Sbjct: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKA--EIDASFGGLL 120

Query: 121 MMLKGDPSHCSKFELDQRLFLLIRKV 147
           MMLKGDPSHCSKFELDQRLFLLIRKV
Sbjct: 121 MMLKGDPSHCSKFELDQRLFLLIRKV 144

[Close]
BLAST of Carg15437 vs. NCBI nr
Match: XP_008454076.1 (PREDICTED: DNA-directed RNA polymerases II and V subunit 8A-like [Cucumis melo])

HSP 1 Score: 230.7 bits (587), Expect = 3.1e-57
Identity = 132/146 (90.41%), Postives = 132/146 (90.41%), Query Frame = 0 

Query: 1   MVELLFDDIFKIERLNPDGKKFDKVTXXXXXXXXXXXXXHLDINTEIYNLKEGEKFSMAL 60
           MVELLFDDIFKIERLNPDGKKFD   XXXXXXXXXXXXX       IY LKEGEKFSMAL
Sbjct: 1   MVELLFDDIFKIERLNPDGKKFDXXXXXXXXXXXXXXXXXXXXXXXIYPLKEGEKFSMAL 60

Query: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMHGKLFRISESSGHGGKAYVEIDASFGGLL 120
           APTLNLDGTPDTGYFLQGNRKSLADRYEYVM GKLFRISESSGHGGKA  EIDASFGGLL
Sbjct: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKA--EIDASFGGLL 120

Query: 121 MMLKGDPSHCSKFELDQRLFLLIRKV 147
           MMLKGDPSHCSKFELDQRLFLLIRKV
Sbjct: 121 MMLKGDPSHCSKFELDQRLFLLIRKV 144

[Close]
BLAST of Carg15437 vs. TAIR10
Match: AT1G54250.1 (RNA polymerase Rpb8)

HSP 1 Score: 189.9 bits (481), Expect = 1.1e-48
Identity = 90/143 (62.94%), Postives = 112/143 (78.32%), Query Frame = 0 

Query: 4   LLFDDIFKIERLNPDGKKFDKVTXXXXXXXXXXXXXHLDINTEIYNLKEGEKFSMALAPT 63
           +LF+DIF +++L+PDGKKFDKVT             HLD+NTE+Y L  G+KF++ALAPT
Sbjct: 6   ILFEDIFVVDQLDPDGKKFDKVTRVQATSHNLEMFMHLDVNTEVYPLAVGDKFTLALAPT 65

Query: 64  LNLDGTPDTGYFLQGNRKSLADRYEYVMHGKLFRISESSGHGGKAYVEIDASFGGLLMML 123
           LNLDGTPDTGYF  G +K+LAD+YEY+MHGKL++ISE  G   KA  E+  SFGGLLM+L
Sbjct: 66  LNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKISERDGKTPKA--ELYVSFGGLLMLL 125

Query: 124 KGDPSHCSKFELDQRLFLLIRKV 147
           KGDP+H S FELDQRLFLL+RK+
Sbjct: 126 KGDPAHISHFELDQRLFLLMRKL 146

[Close]
BLAST of Carg15437 vs. TAIR10
Match: AT3G59600.1 (RNA polymerase Rpb8)

HSP 1 Score: 187.2 bits (474), Expect = 7.2e-48
Identity = 87/143 (60.84%), Postives = 112/143 (78.32%), Query Frame = 0 

Query: 4   LLFDDIFKIERLNPDGKKFDKVTXXXXXXXXXXXXXHLDINTEIYNLKEGEKFSMALAPT 63
           ++F+DIF +++L+PDGKKFDKVT             HLD+NTE+Y L  G+KF++A+APT
Sbjct: 6   IMFEDIFVVDKLDPDGKKFDKVTRVEARSHNLEMFMHLDVNTEVYPLAVGDKFTLAMAPT 65

Query: 64  LNLDGTPDTGYFLQGNRKSLADRYEYVMHGKLFRISESSGHGGKAYVEIDASFGGLLMML 123
           LNLDGTPDTGYF  G +K+LAD+YEY+MHGKL++ISE  G   KA  E+  SFGGLLM+L
Sbjct: 66  LNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKISERDGKTPKA--ELYVSFGGLLMLL 125

Query: 124 KGDPSHCSKFELDQRLFLLIRKV 147
           +GDP+H S FELDQRLFLL+RK+
Sbjct: 126 QGDPAHISHFELDQRLFLLMRKL 146

[Close]
BLAST of Carg15437 vs. Swiss-Prot
Match: sp|O81097|RPB8A_ARATH (DNA-directed RNA polymerases II and V subunit 8A OS=Arabidopsis thaliana OX=3702 GN=NRPB8A PE=1 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.0e-47
Identity = 90/143 (62.94%), Postives = 112/143 (78.32%), Query Frame = 0 

Query: 4   LLFDDIFKIERLNPDGKKFDKVTXXXXXXXXXXXXXHLDINTEIYNLKEGEKFSMALAPT 63
           +LF+DIF +++L+PDGKKFDKVT             HLD+NTE+Y L  G+KF++ALAPT
Sbjct: 6   ILFEDIFVVDQLDPDGKKFDKVTRVQATSHNLEMFMHLDVNTEVYPLAVGDKFTLALAPT 65

Query: 64  LNLDGTPDTGYFLQGNRKSLADRYEYVMHGKLFRISESSGHGGKAYVEIDASFGGLLMML 123
           LNLDGTPDTGYF  G +K+LAD+YEY+MHGKL++ISE  G   KA  E+  SFGGLLM+L
Sbjct: 66  LNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKISERDGKTPKA--ELYVSFGGLLMLL 125

Query: 124 KGDPSHCSKFELDQRLFLLIRKV 147
           KGDP+H S FELDQRLFLL+RK+
Sbjct: 126 KGDPAHISHFELDQRLFLLMRKL 146

[Close]
BLAST of Carg15437 vs. Swiss-Prot
Match: sp|Q9M1A8|RPB8B_ARATH (DNA-directed RNA polymerases II, IV and V subunit 8B OS=Arabidopsis thaliana OX=3702 GN=NRPB8B PE=1 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.3e-46
Identity = 87/143 (60.84%), Postives = 112/143 (78.32%), Query Frame = 0 

Query: 4   LLFDDIFKIERLNPDGKKFDKVTXXXXXXXXXXXXXHLDINTEIYNLKEGEKFSMALAPT 63
           ++F+DIF +++L+PDGKKFDKVT             HLD+NTE+Y L  G+KF++A+APT
Sbjct: 6   IMFEDIFVVDKLDPDGKKFDKVTRVEARSHNLEMFMHLDVNTEVYPLAVGDKFTLAMAPT 65

Query: 64  LNLDGTPDTGYFLQGNRKSLADRYEYVMHGKLFRISESSGHGGKAYVEIDASFGGLLMML 123
           LNLDGTPDTGYF  G +K+LAD+YEY+MHGKL++ISE  G   KA  E+  SFGGLLM+L
Sbjct: 66  LNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKISERDGKTPKA--ELYVSFGGLLMLL 125

Query: 124 KGDPSHCSKFELDQRLFLLIRKV 147
           +GDP+H S FELDQRLFLL+RK+
Sbjct: 126 QGDPAHISHFELDQRLFLLMRKL 146

[Close]
BLAST of Carg15437 vs. Swiss-Prot
Match: sp|Q54YW8|RPAB3_DICDI (DNA-directed RNA polymerases I, II, and III subunit rpabc3 OS=Dictyostelium discoideum OX=44689 GN=polr2h PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 6.1e-28
Identity = 62/145 (42.76%), Postives = 92/145 (63.45%), Query Frame = 0 

Query: 1   MVELLFDDIFKIERLNPDGKKFDKVTXXXXXXXXXXXXXHLDINTEIYNLKEGEKFSMAL 60
           M  +LF+D F+++ ++PDGKKFD+V+              +DI T IY L   E+F M L
Sbjct: 1   MTSILFEDTFEVKEIDPDGKKFDRVSRFVCYSENYEMDLQIDIATHIYPLGH-ERFKMVL 60

Query: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMHGKLFRISESSGHGGKAYVEIDASFGGLL 120
           A +LNLDG+ D       N+ SLAD+Y+YVM+GK+F+  + +     + V + ASFGGLL
Sbjct: 61  ASSLNLDGSSDNSGSYDTNKPSLADKYDYVMYGKIFKYQKEN---SSSKVSVFASFGGLL 120

Query: 121 MMLKGDPSHCSKFELDQRLFLLIRK 146
           ++L+GDP +    ELD R++LLI+K
Sbjct: 121 VLLQGDPRYLPGIELDARIYLLIKK 141

[Close]
BLAST of Carg15437 vs. Swiss-Prot
Match: sp|A8XT81|RPAB3_CAEBR (Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Caenorhabditis briggsae OX=6238 GN=rpb-8 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-24
Identity = 56/145 (38.62%), Postives = 85/145 (58.62%), Query Frame = 0 

Query: 1   MVELLFDDIFKIERLNPDGKKFDKVTXXXXXXXXXXXXXHLDINTEIYNLKEGEKFSMAL 60
           M  ++FDD+F ++ ++PDGKKFD+V+              +DIN++IY LK+ +KF + L
Sbjct: 1   MAGIIFDDMFSVKSVDPDGKKFDRVSRYFCDAESFKMELIIDINSQIYPLKQNDKFRLVL 60

Query: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMHGKLFRISESSGHGGKAYVEIDASFGGLL 120
           A TL  DG  D G +          +YEYVM+GK++R+ +         +   ASFGGLL
Sbjct: 61  ATTLREDGLADEGEYDPKAEYPRIKQYEYVMYGKVYRLEDDDSGTDGGQLAAYASFGGLL 120

Query: 121 MMLKGDPSHCSKFELDQRLFLLIRK 146
           M LKG+  +   FE+D  L+LL++K
Sbjct: 121 MRLKGEAINLHGFEVDMNLYLLMKK 145

[Close]
BLAST of Carg15437 vs. Swiss-Prot
Match: sp|P52434|RPAB3_HUMAN (DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Homo sapiens OX=9606 GN=POLR2H PE=1 SV=4)

HSP 1 Score: 112.8 bits (281), Expect = 3.1e-24
Identity = 61/149 (40.94%), Postives = 94/149 (63.09%), Query Frame = 0 

Query: 1   MVELLFDDIFKIERLNPDGKKFDKVTXXXXXXXXXXXXXHLDINTEIYNLKEGEKFSMAL 60
           M  +LF+DIF ++ ++P+GKKFD+V+              LD+N +IY +  G+KF + +
Sbjct: 1   MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI 60

Query: 61  APTLNLDGTPDTG-YFLQGNRKSLADRYEYVMHGKLFRISESSGHGGKAYVEIDA--SFG 120
           A TL  DGT D G Y    +R S AD++EYVM+GK++RI E      +A   + A  S+G
Sbjct: 61  ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRI-EGDETSTEAATRLSAYVSYG 120

Query: 121 GLLMMLKGDPSHCSKFELDQRLFLLIRKV 147
           GLLM L+GD ++   FE+D R++LL++K+
Sbjct: 121 GLLMRLQGDANNLHGFEVDSRVYLLMKKL 148

[Close]
BLAST of Carg15437 vs. TrEMBL
Match: tr|A0A0A0KYV5|A0A0A0KYV5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011050 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 4.2e-58
Identity = 133/146 (91.10%), Postives = 133/146 (91.10%), Query Frame = 0 

Query: 1   MVELLFDDIFKIERLNPDGKKFDKVTXXXXXXXXXXXXXHLDINTEIYNLKEGEKFSMAL 60
           MVELLFDDIFKIERLNPDGKKFDK  XXXXXXXXXXXXX       IY LKEGEKFSMAL
Sbjct: 1   MVELLFDDIFKIERLNPDGKKFDKXXXXXXXXXXXXXXXXXXXXXXIYPLKEGEKFSMAL 60

Query: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMHGKLFRISESSGHGGKAYVEIDASFGGLL 120
           APTLNLDGTPDTGYFLQGNRKSLADRYEYVM GKLFRISESSGHGGKA  EIDASFGGLL
Sbjct: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKA--EIDASFGGLL 120

Query: 121 MMLKGDPSHCSKFELDQRLFLLIRKV 147
           MMLKGDPSHCSKFELDQRLFLLIRKV
Sbjct: 121 MMLKGDPSHCSKFELDQRLFLLIRKV 144

[Close]
BLAST of Carg15437 vs. TrEMBL
Match: tr|A0A1S3BXS2|A0A1S3BXS2_CUCME (DNA-directed RNA polymerases II and V subunit 8A-like OS=Cucumis melo OX=3656 GN=LOC103494598 PE=3 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 2.1e-57
Identity = 132/146 (90.41%), Postives = 132/146 (90.41%), Query Frame = 0 

Query: 1   MVELLFDDIFKIERLNPDGKKFDKVTXXXXXXXXXXXXXHLDINTEIYNLKEGEKFSMAL 60
           MVELLFDDIFKIERLNPDGKKFD   XXXXXXXXXXXXX       IY LKEGEKFSMAL
Sbjct: 1   MVELLFDDIFKIERLNPDGKKFDXXXXXXXXXXXXXXXXXXXXXXXIYPLKEGEKFSMAL 60

Query: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMHGKLFRISESSGHGGKAYVEIDASFGGLL 120
           APTLNLDGTPDTGYFLQGNRKSLADRYEYVM GKLFRISESSGHGGKA  EIDASFGGLL
Sbjct: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKA--EIDASFGGLL 120

Query: 121 MMLKGDPSHCSKFELDQRLFLLIRKV 147
           MMLKGDPSHCSKFELDQRLFLLIRKV
Sbjct: 121 MMLKGDPSHCSKFELDQRLFLLIRKV 144

[Close]
BLAST of Carg15437 vs. TrEMBL
Match: tr|W9RPZ0|W9RPZ0_9ROSA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Morus notabilis OX=981085 GN=L484_007786 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 2.9e-51
Identity = 103/146 (70.55%), Postives = 116/146 (79.45%), Query Frame = 0 

Query: 1   MVELLFDDIFKIERLNPDGKKFDKVTXXXXXXXXXXXXXHLDINTEIYNLKEGEKFSMAL 60
           M E LF+DIFKI+RLNPDGKKFDKVT             HLD+ T++Y + EGEKFSMAL
Sbjct: 1   MAEFLFEDIFKIDRLNPDGKKFDKVTRIEAKSEKFDMFMHLDVGTDVYPMNEGEKFSMAL 60

Query: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMHGKLFRISESSGHGGKAYVEIDASFGGLL 120
           + TLN DGTPDTGY+  GNRK+LAD YEYVM GKL+RI+E SGH GKA  EIDASFGGLL
Sbjct: 61  SSTLNEDGTPDTGYYTPGNRKTLADNYEYVMQGKLYRIAEGSGHHGKA--EIDASFGGLL 120

Query: 121 MMLKGDPSHCSKFELDQRLFLLIRKV 147
           MMLKGDPS+  K+ELDQRLFLLIRKV
Sbjct: 121 MMLKGDPSYFKKYELDQRLFLLIRKV 144

[Close]
BLAST of Carg15437 vs. TrEMBL
Match: tr|A0A2P5AWG8|A0A2P5AWG8_9ROSA (RNA polymerase, Rpb OS=Trema orientalis OX=63057 GN=TorRG33x02_339420 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 3.2e-50
Identity = 102/146 (69.86%), Postives = 115/146 (78.77%), Query Frame = 0 

Query: 1   MVELLFDDIFKIERLNPDGKKFDKVTXXXXXXXXXXXXXHLDINTEIYNLKEGEKFSMAL 60
           M E LF+D+FKI++LNPDGKKFDKVT             HLD+NTE+Y L+EGEKFSMAL
Sbjct: 1   MAEFLFEDVFKIDQLNPDGKKFDKVTRIEAKSEKFDMFMHLDVNTEVYPLREGEKFSMAL 60

Query: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMHGKLFRISESSGHGGKAYVEIDASFGGLL 120
           + TLN DGTPDTGYF  GNRK+LAD YEYVM GKL+RISE SG G     EI+ASFGGLL
Sbjct: 61  SSTLNEDGTPDTGYFTPGNRKTLADNYEYVMQGKLYRISEGSGQG---KAEINASFGGLL 120

Query: 121 MMLKGDPSHCSKFELDQRLFLLIRKV 147
           MMLKGDPS+  K+ELDQRLFLLIRKV
Sbjct: 121 MMLKGDPSYFKKYELDQRLFLLIRKV 143

[Close]
BLAST of Carg15437 vs. TrEMBL
Match: tr|A0A199UUU1|A0A199UUU1_ANACO (DNA-directed RNA polymerases II, IV and V subunit 8B OS=Ananas comosus OX=4615 GN=ACMD2_04423 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 5.5e-50
Identity = 101/146 (69.18%), Postives = 117/146 (80.14%), Query Frame = 0 

Query: 1   MVELLFDDIFKIERLNPDGKKFDKVTXXXXXXXXXXXXXHLDINTEIYNLKEGEKFSMAL 60
           MVELLF+DIF + RL+PDGKKFDKV+              LDINTEIY +  G+KF+M L
Sbjct: 1   MVELLFEDIFVLMRLDPDGKKFDKVSRIEARSEQFDMFMQLDINTEIYPMHVGDKFTMVL 60

Query: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMHGKLFRISESSGHGGKAYVEIDASFGGLL 120
           APTLNLDGTPD+GYF+QGNRKSLAD++EYVMHGKL++ISE S  G  A VEI ASFGGLL
Sbjct: 61  APTLNLDGTPDSGYFVQGNRKSLADKFEYVMHGKLYKISEDSSSGKNAKVEIYASFGGLL 120

Query: 121 MMLKGDPSHCSKFELDQRLFLLIRKV 147
           MMLKGDPS+ + FELDQR+FLLIRKV
Sbjct: 121 MMLKGDPSNAANFELDQRIFLLIRKV 146

The following BLAST results are available for this feature:
BLAST of Carg15437 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022932746.12.8e-6698.63DNA-directed RNA polymerases II and V subunit 8A-like [Cucurbita moschata] >XP_0... [more]
XP_022972118.13.1e-6597.95DNA-directed RNA polymerases II and V subunit 8A-like [Cucurbita maxima] >XP_022... [more]
XP_022145813.11.6e-6495.89DNA-directed RNA polymerases II and V subunit 8A-like isoform X2 [Momordica char... [more]
XP_004152137.16.3e-5891.10PREDICTED: DNA-directed RNA polymerases II and V subunit 8A [Cucumis sativus] >K... [more]
XP_008454076.13.1e-5790.41PREDICTED: DNA-directed RNA polymerases II and V subunit 8A-like [Cucumis melo][more]
BLAST of Carg15437 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G54250.11.1e-4862.94RNA polymerase Rpb8[more]
AT3G59600.17.2e-4860.84RNA polymerase Rpb8[more]
BLAST of Carg15437 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|O81097|RPB8A_ARATH2.0e-4762.94DNA-directed RNA polymerases II and V subunit 8A OS=Arabidopsis thaliana OX=3702... [more]
sp|Q9M1A8|RPB8B_ARATH1.3e-4660.84DNA-directed RNA polymerases II, IV and V subunit 8B OS=Arabidopsis thaliana OX=... [more]
sp|Q54YW8|RPAB3_DICDI6.1e-2842.76DNA-directed RNA polymerases I, II, and III subunit rpabc3 OS=Dictyostelium disc... [more]
sp|A8XT81|RPAB3_CAEBR1.1e-2438.62Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Caenorhab... [more]
sp|P52434|RPAB3_HUMAN3.1e-2440.94DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Homo sapiens OX=96... [more]
BLAST of Carg15437 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KYV5|A0A0A0KYV5_CUCSA4.2e-5891.10Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G011050 PE=3 SV=1[more]
tr|A0A1S3BXS2|A0A1S3BXS2_CUCME2.1e-5790.41DNA-directed RNA polymerases II and V subunit 8A-like OS=Cucumis melo OX=3656 GN... [more]
tr|W9RPZ0|W9RPZ0_9ROSA2.9e-5170.55DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Morus notabilis OX... [more]
tr|A0A2P5AWG8|A0A2P5AWG8_9ROSA3.2e-5069.86RNA polymerase, Rpb OS=Trema orientalis OX=63057 GN=TorRG33x02_339420 PE=3 SV=1[more]
tr|A0A199UUU1|A0A199UUU1_ANACO5.5e-5069.18DNA-directed RNA polymerases II, IV and V subunit 8B OS=Ananas comosus OX=4615 G... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR005570RNA_pol_Rpb8
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15437-RACarg15437-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005570RNA polymerase, Rpb8SMARTSM00658rpol8neucoord: 2..145
e-value: 1.0E-65
score: 234.3
IPR005570RNA polymerase, Rpb8PIRSFPIRSF000779RPB8coord: 1..146
e-value: 1.9E-48
score: 162.1
IPR005570RNA polymerase, Rpb8PFAMPF03870RNA_pol_Rpb8coord: 7..145
e-value: 7.1E-50
score: 168.7
IPR005570RNA polymerase, Rpb8PANTHERPTHR10917DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3coord: 1..146
NoneNo IPR availableGENE3DG3DSA:2.40.50.140coord: 6..146
e-value: 1.2E-52
score: 179.6
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILYSSF50249Nucleic acid-binding proteinscoord: 4..145

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg15437Cla010901Watermelon (97103) v1carwmB0690
Carg15437Csa4G011050Cucumber (Chinese Long) v2carcuB0716
Carg15437MELO3C017775Melon (DHL92) v3.5.1carmeB0694
Carg15437ClCG07G015110Watermelon (Charleston Gray)carwcgB0670
Carg15437CSPI04G02730Wild cucumber (PI 183967)carcpiB0730
Carg15437Cucsa.095410Cucumber (Gy14) v1carcgyB0775
Carg15437CmoCh06G016890Cucurbita moschata (Rifu)carcmoB0947
Carg15437CsGy4G002580Cucumber (Gy14) v2carcgybB0693
Carg15437MELO3C017775.2Melon (DHL92) v3.6.1carmedB0707
Carg15437CsaV3_4G002660Cucumber (Chinese Long) v3carcucB0733
Carg15437Cla97C07G142080Watermelon (97103) v2carwmbB0722
Carg15437Bhi01G002858Wax gourdcarwgoB0818
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg15437Silver-seed gourdcarcarB013
Carg15437Silver-seed gourdcarcarB142
Carg15437Cucumber (Gy14) v1carcgyB0778
Carg15437Cucurbita maxima (Rimu)carcmaB0972
Carg15437Cucurbita maxima (Rimu)carcmaB0973
Carg15437Cucurbita maxima (Rimu)carcmaB0974
Carg15437Cucurbita moschata (Rifu)carcmoB0946
Carg15437Cucurbita pepo (Zucchini)carcpeB0973
Carg15437Cucurbita pepo (Zucchini)carcpeB0974
Carg15437Wild cucumber (PI 183967)carcpiB0731
Carg15437Cucumber (Chinese Long) v3carcucB0734
Carg15437Bottle gourd (USVL1VR-Ls)carlsiB631
Carg15437Bottle gourd (USVL1VR-Ls)carlsiB635
Carg15437Melon (DHL92) v3.5.1carmeB0691
Carg15437Melon (DHL92) v3.6.1carmedB0704
Carg15437Watermelon (Charleston Gray)carwcgB0669
Carg15437Watermelon (97103) v1carwmB0693
Carg15437Watermelon (97103) v2carwmbB0721
Carg15437Wax gourdcarwgoB0813
Carg15437Wax gourdcarwgoB0814