Cla010901 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla010901
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	DNA-directed RNA polymerases I II and III subunit RPABC3 (AHRD V1 **** B9EM78_SALSA); contains Interpro domain(s) IPR005570 RNA polymerase, Rpb8
Location	Chr7 : 30974906 .. 30976726 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGAGCTTCTCTTTGATGATATTTTTAAGATTGAGCGATTAAACCCAGATGGTAAAAAGTTTGATAAAGGTACGTTTTTGTGTAGTAGTCACTCTCTTTTCCTTTATATAATATTTCCAGGGAGGCTTAGTTTGTCTCCATGATGGAGTTATAGACTTATAGCCTTGCAACTCTTCAAATAAAATGAAAAAAGTTTCTTTGTGAAAAAATAAATAAACTATGATGATGTAACTGCATTGAATCATTAATCTGATAGATTAAAGTCTTGAAGTCTAAAACGTTGAAAATGGCGTCTGAAGTCTTGTATTTCTCTTGGAAGATGCGAGAATTGGAAACATCTATATGAAATGGTTTTCTTTTGTATTTTTGGATATCTTCGGATATTTCATTTATCAATGAAATTGTCTCTTATCTAAAAAAAGAAAAAAAGAAAAATCTGAAATACCTCTCTAAACGTGCTGATTGTTTTTAATATTTACTTGAGCCTTTTACAAACTTGCTGTGCTATTACTGTATCATGAACCTTTTTTCTTTTGTATCTCCGTCCCTTGTCGACTCACCAATTTGCATACATATTCTTCTTTTACCCATTGATGTGAGTAGAATCTTCTCGTTCATTATTTATTGATCTTGTAGAGGTTTCCTTTCACCCAGTTAGGGATGTCATCTGGAATATAATAATTTCTTTATTACAAGTCATGTAAAATATGTTTAAAAAAAGTTTTCAACAAATTTAGGCAGATGCCATTTATGTTTCCTCAATCTGTCTAACAGTTACTCGAATAGAGGCGAAGAGCGAGAAGTTTGACATGTTCATGCATCTAGATATAAATTCAGAAATTTATAACTTGAAAGAAGGTGAGAAGTTCTCGATGGCACTAGCTCCAACTCTGAATCTCGATGGAACCCCTGACACGGGTTATTTTCTTCAGGTAACCTGTTCTTCCATTGATTATATAGTCTGTTGCACACTAGACGGAGTGTGGTATTGGTAAGAAAATAATTTCCTGGTATAGCAGTTACTGATCGAATGAAGAATTTAGTAGTCCATTTCGTCATAAACTCTACTAGTTTTGAAATATCACTTCGAACATTAATAGGTAGCTAGAAACTTTCAATCTACTAGGAAATATATGCTTTTCATGGTTAATGCATATGTCTATTTACTGTCATGACTGGTCTTCATTGTTTTCTGACAACTATATTTGTTTCTTGCATCTGTTCAAATACTAATTTGGTCTTAAGCATTCTCAATACTTGAATATGTTTGTTTAAGAATCGTTAGGTTGCATAACAGGGCAATCGGAAGTCACTTGCAGACAGATATGAATATGTCATGCAAGGGAAGCTGTTCAGAATATCGGAAAGTTCTGGTCATGGTGGTAAAGCGTATGTGCTATAACTTCTCGAAACAATTTTGATGCGACACTTTAATTCTACTGTATGAGCATTAGAGAACCGAGAGCTTGACATTTCACAGTGCATTCTCCTGTCTCTGTAATGGCTACATAATTATGTGGTTAAAATTCATTTTAGTTTCTTTTTCTGAACTTCTTGAACATACATATATTCTAGTTGAATTATTATCTTAAAAAAATATATTCCATCTGAATCCAGTGAAATAGATGCTTCTTTTGGTGGGCTTCTGATGATGCTGAAGGGGGATCCCTCACATTGCAGCAAGTTTGAACTTGACCAGAGGCTGTTTCTTCTCATCAGGAAGGTGTGAAGCGCTTTCATTTGATTTGAACTCTAATGACTTGCTACTAGAAAAGCTTCGAACATCGCCTATCGCTATTAGAAATGTGTATTGTTAG

mRNA sequence

ATGGTTGAGCTTCTCTTTGATGATATTTTTAAGATTGAGCGATTAAACCCAGATGGTAAAAAGTTTGATAAAGTTACTCGAATAGAGGCGAAGAGCGAGAAGTTTGACATGTTCATGCATCTAGATATAAATTCAGAAATTTATAACTTGAAAGAAGGTGAGAAGTTCTCGATGGCACTAGCTCCAACTCTGAATCTCGATGGAACCCCTGACACGGGTTATTTTCTTCAGGGCAATCGGAAGTCACTTGCAGACAGATATGAATATGTCATGCAAGGGAAGCTGTTCAGAATATCGGAAAGTTCTGGTCATGGTGGTAAAGCGGGGATCCCTCACATTGCAGCAAGTTTGAACTTGACCAGAGGCTGTTTCTTCTCATCAGGAAGGTGTGAAGCGCTTTCATTTGATTTGAACTCTAATGACTTGCTACTAGAAAAGCTTCGAACATCGCCTATCGCTATTAGAAATGTGTATTGTTAG

Coding sequence (CDS)

ATGGTTGAGCTTCTCTTTGATGATATTTTTAAGATTGAGCGATTAAACCCAGATGGTAAAAAGTTTGATAAAGTTACTCGAATAGAGGCGAAGAGCGAGAAGTTTGACATGTTCATGCATCTAGATATAAATTCAGAAATTTATAACTTGAAAGAAGGTGAGAAGTTCTCGATGGCACTAGCTCCAACTCTGAATCTCGATGGAACCCCTGACACGGGTTATTTTCTTCAGGGCAATCGGAAGTCACTTGCAGACAGATATGAATATGTCATGCAAGGGAAGCTGTTCAGAATATCGGAAAGTTCTGGTCATGGTGGTAAAGCGGGGATCCCTCACATTGCAGCAAGTTTGAACTTGACCAGAGGCTGTTTCTTCTCATCAGGAAGGTGTGAAGCGCTTTCATTTGATTTGAACTCTAATGACTTGCTACTAGAAAAGCTTCGAACATCGCCTATCGCTATTAGAAATGTGTATTGTTAG

Protein sequence

MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMALAPTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKAGIPHIAASLNLTRGCFFSSGRCEALSFDLNSNDLLLEKLRTSPIAIRNVYC

Homology

[Close]

BLAST of Cla010901 vs. Swiss-Prot
Match: RPB8B_ARATH (DNA-directed RNA polymerases II, IV and V subunit 8B OS=Arabidopsis thaliana GN=NRPB8B PE=1 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 5.0e-36
Identity = 66/105 (62.86%), Postives = 87/105 (82.86%), Query Frame = 1


Query: 4   LLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMALAPT 63
           ++F+DIF +++L+PDGKKFDKVTR+EA+S   +MFMHLD+N+E+Y L  G+KF++A+APT
Sbjct: 6   IMFEDIFVVDKLDPDGKKFDKVTRVEARSHNLEMFMHLDVNTEVYPLAVGDKFTLAMAPT 65

Query: 64  LNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKA 109
           LNLDGTPDTGYF  G +K+LAD+YEY+M GKL++ISE  G   KA
Sbjct: 66  LNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKISERDGKTPKA 110

[Close]

BLAST of Cla010901 vs. Swiss-Prot
Match: RPB8A_ARATH (DNA-directed RNA polymerases II and V subunit 8A OS=Arabidopsis thaliana GN=NRPB8A PE=1 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.1e-35
Identity = 67/105 (63.81%), Postives = 86/105 (81.90%), Query Frame = 1


Query: 4   LLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMALAPT 63
           +LF+DIF +++L+PDGKKFDKVTR++A S   +MFMHLD+N+E+Y L  G+KF++ALAPT
Sbjct: 6   ILFEDIFVVDQLDPDGKKFDKVTRVQATSHNLEMFMHLDVNTEVYPLAVGDKFTLALAPT 65

Query: 64  LNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKA 109
           LNLDGTPDTGYF  G +K+LAD+YEY+M GKL++ISE  G   KA
Sbjct: 66  LNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKISERDGKTPKA 110

[Close]

BLAST of Cla010901 vs. Swiss-Prot
Match: RPAB3_DICDI (DNA-directed RNA polymerases I, II, and III subunit rpabc3 OS=Dictyostelium discoideum GN=polr2h PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.2e-19
Identity = 45/102 (44.12%), Postives = 68/102 (66.67%), Query Frame = 1


Query: 1   MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMAL 60
           M  +LF+D F+++ ++PDGKKFD+V+R    SE ++M + +DI + IY L   E+F M L
Sbjct: 1   MTSILFEDTFEVKEIDPDGKKFDRVSRFVCYSENYEMDLQIDIATHIYPLGH-ERFKMVL 60

Query: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESS 103
           A +LNLDG+ D       N+ SLAD+Y+YVM GK+F+  + +
Sbjct: 61  ASSLNLDGSSDNSGSYDTNKPSLADKYDYVMYGKIFKYQKEN 101

[Close]

BLAST of Cla010901 vs. Swiss-Prot
Match: RPAB3_HUMAN (DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Homo sapiens GN=POLR2H PE=1 SV=4)

HSP 1 Score: 95.1 bits (235), Expect = 7.2e-19
Identity = 47/99 (47.47%), Postives = 68/99 (68.69%), Query Frame = 1


Query: 1  MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMAL 60
          M  +LF+DIF ++ ++P+GKKFD+V+R+  +SE F M + LD+N +IY +  G+KF + +
Sbjct: 1  MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI 60

Query: 61 APTLNLDGTPDTG-YFLQGNRKSLADRYEYVMQGKLFRI 99
          A TL  DGT D G Y    +R S AD++EYVM GK++RI
Sbjct: 61 ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRI 99

[Close]

BLAST of Cla010901 vs. Swiss-Prot
Match: RPAB3_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Mus musculus GN=Polr2h PE=1 SV=3)

HSP 1 Score: 95.1 bits (235), Expect = 7.2e-19
Identity = 47/99 (47.47%), Postives = 68/99 (68.69%), Query Frame = 1


Query: 1  MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMAL 60
          M  +LF+DIF ++ ++P+GKKFD+V+R+  +SE F M + LD+N +IY +  G+KF + +
Sbjct: 1  MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI 60

Query: 61 APTLNLDGTPDTG-YFLQGNRKSLADRYEYVMQGKLFRI 99
          A TL  DGT D G Y    +R S AD++EYVM GK++RI
Sbjct: 61 ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRI 99

[Close]

BLAST of Cla010901 vs. TrEMBL
Match: A0A0A0KYV5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G011050 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.1e-53
Identity = 108/110 (98.18%), Postives = 108/110 (98.18%), Query Frame = 1


Query: 1   MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMAL 60
           MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIY LKEGEKFSMAL
Sbjct: 1   MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYPLKEGEKFSMAL 60

Query: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKAGI 111
           APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKA I
Sbjct: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKAEI 110

[Close]

BLAST of Cla010901 vs. TrEMBL
Match: W9RPZ0_9ROSA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Morus notabilis GN=L484_007786 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 8.5e-43
Identity = 85/110 (77.27%), Postives = 97/110 (88.18%), Query Frame = 1


Query: 1   MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMAL 60
           M E LF+DIFKI+RLNPDGKKFDKVTRIEAKSEKFDMFMHLD+ +++Y + EGEKFSMAL
Sbjct: 1   MAEFLFEDIFKIDRLNPDGKKFDKVTRIEAKSEKFDMFMHLDVGTDVYPMNEGEKFSMAL 60

Query: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKAGI 111
           + TLN DGTPDTGY+  GNRK+LAD YEYVMQGKL+RI+E SGH GKA I
Sbjct: 61  SSTLNEDGTPDTGYYTPGNRKTLADNYEYVMQGKLYRIAEGSGHHGKAEI 110

[Close]

BLAST of Cla010901 vs. TrEMBL
Match: M5WHF7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011397mg PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.0e-40
Identity = 83/110 (75.45%), Postives = 95/110 (86.36%), Query Frame = 1


Query: 1   MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMAL 60
           MV+ LF+DIF+I RLNPDGKKFDKVTRIEAKSE  +MFMHLD+NSE+Y ++EGEKFSMAL
Sbjct: 69  MVDRLFEDIFQILRLNPDGKKFDKVTRIEAKSETCEMFMHLDVNSEVYPMREGEKFSMAL 128

Query: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKAGI 111
             T+NLDGTPDTGYF QGNRK+LAD YEYVMQGKLF+ISE S    KA +
Sbjct: 129 TSTINLDGTPDTGYFTQGNRKTLADEYEYVMQGKLFKISEGSKRDPKAEV 178

[Close]

BLAST of Cla010901 vs. TrEMBL
Match: A0A058ZTI5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L01795 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.8e-38
Identity = 80/115 (69.57%), Postives = 97/115 (84.35%), Query Frame = 1


Query: 4   LLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMALAPT 63
           ++ +D+FK+ERL+PDGKKFDKVTRIEA+SE+FDMFMHLD+N+EIY +KEG+KF+MALA T
Sbjct: 2   IILEDVFKVERLDPDGKKFDKVTRIEARSERFDMFMHLDVNTEIYPMKEGQKFTMALAST 61

Query: 64  LNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISE--------SSGHGGKAGI 111
           LN DGTPDTGY+  GNRKSLAD+YEYVM GKL++ISE        SSG G KA I
Sbjct: 62  LNPDGTPDTGYYTPGNRKSLADKYEYVMHGKLYKISEDDPGRASKSSGKGVKAEI 116

[Close]

BLAST of Cla010901 vs. TrEMBL
Match: U5D4P8_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00070p00019820 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 6.3e-38
Identity = 76/103 (73.79%), Postives = 92/103 (89.32%), Query Frame = 1


Query: 1   MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMAL 60
           MVELLF+DIF + +LNPDGKKFDKV+RIEA+SE+FDMFM LD+N+E+Y L  G+KF+M L
Sbjct: 1   MVELLFEDIFTLTKLNPDGKKFDKVSRIEARSEQFDMFMQLDVNTEVYPLNVGDKFTMVL 60

Query: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSG 104
           APTL+LDGTPDTGYF QG RKSLAD++EYVM GKL++ISE SG
Sbjct: 61  APTLSLDGTPDTGYFTQGGRKSLADKFEYVMHGKLYKISEDSG 103

[Close]

BLAST of Cla010901 vs. NCBI nr
Match: gi|449468856|ref|XP_004152137.1| (PREDICTED: DNA-directed RNA polymerases II and V subunit 8A [Cucumis sativus])

HSP 1 Score: 217.6 bits (553), Expect = 1.5e-53
Identity = 108/110 (98.18%), Postives = 108/110 (98.18%), Query Frame = 1


Query: 1   MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMAL 60
           MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIY LKEGEKFSMAL
Sbjct: 1   MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYPLKEGEKFSMAL 60

Query: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKAGI 111
           APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKA I
Sbjct: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKAEI 110

[Close]

BLAST of Cla010901 vs. NCBI nr
Match: gi|659108210|ref|XP_008454076.1| (PREDICTED: DNA-directed RNA polymerases II and V subunit 8A-like [Cucumis melo])

HSP 1 Score: 217.2 bits (552), Expect = 2.0e-53
Identity = 107/110 (97.27%), Postives = 108/110 (98.18%), Query Frame = 1


Query: 1   MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMAL 60
           MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLD+NSEIY LKEGEKFSMAL
Sbjct: 1   MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDVNSEIYPLKEGEKFSMAL 60

Query: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKAGI 111
           APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKA I
Sbjct: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKAEI 110

[Close]

BLAST of Cla010901 vs. NCBI nr
Match: gi|1009112598|ref|XP_015869217.1| (PREDICTED: DNA-directed RNA polymerases II and V subunit 8A-like [Ziziphus jujuba])

HSP 1 Score: 184.9 bits (468), Expect = 1.1e-43
Identity = 90/110 (81.82%), Postives = 97/110 (88.18%), Query Frame = 1


Query: 1   MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMAL 60
           M E LF+DIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDIN+EIY +KE EKFSMAL
Sbjct: 1   MAEFLFEDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINTEIYPMKEREKFSMAL 60

Query: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKAGI 111
           + TLN DGTPDTGY+ Q NRK+LAD YEYVMQGKL+RISE  GHGG A I
Sbjct: 61  SSTLNEDGTPDTGYYTQANRKTLADNYEYVMQGKLYRISEGPGHGGIAEI 110

[Close]

BLAST of Cla010901 vs. NCBI nr
Match: gi|703116084|ref|XP_010101052.1| (DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Morus notabilis])

HSP 1 Score: 181.4 bits (459), Expect = 1.2e-42
Identity = 85/110 (77.27%), Postives = 97/110 (88.18%), Query Frame = 1


Query: 1   MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMAL 60
           M E LF+DIFKI+RLNPDGKKFDKVTRIEAKSEKFDMFMHLD+ +++Y + EGEKFSMAL
Sbjct: 1   MAEFLFEDIFKIDRLNPDGKKFDKVTRIEAKSEKFDMFMHLDVGTDVYPMNEGEKFSMAL 60

Query: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKAGI 111
           + TLN DGTPDTGY+  GNRK+LAD YEYVMQGKL+RI+E SGH GKA I
Sbjct: 61  SSTLNEDGTPDTGYYTPGNRKTLADNYEYVMQGKLYRIAEGSGHHGKAEI 110

[Close]

BLAST of Cla010901 vs. NCBI nr
Match: gi|645241925|ref|XP_008227310.1| (PREDICTED: DNA-directed RNA polymerases II and V subunit 8A-like [Prunus mume])

HSP 1 Score: 172.9 bits (437), Expect = 4.4e-40
Identity = 83/110 (75.45%), Postives = 95/110 (86.36%), Query Frame = 1


Query: 1   MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYNLKEGEKFSMAL 60
           MV+ LF+DIF+I RLNPDGKKFDKVTRIEAKSE  +MFMHLD+NSE+Y ++EGEKFSMAL
Sbjct: 1   MVDRLFEDIFQILRLNPDGKKFDKVTRIEAKSETCEMFMHLDVNSEVYPMREGEKFSMAL 60

Query: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKAGI 111
             T+NLDGTPDTGYF QGNRK+LAD YEYVMQGKLF+ISE S    KA +
Sbjct: 61  TSTINLDGTPDTGYFTQGNRKTLADEYEYVMQGKLFKISEGSKRDPKAEV 110

The following BLAST results are available for this feature:

BLAST of Cla010901 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RPB8B_ARATH	5.0e-36	62.86	DNA-directed RNA polymerases II, IV and V subunit 8B OS=Arabidopsis thaliana GN=...	[more]
RPB8A_ARATH	1.1e-35	63.81	DNA-directed RNA polymerases II and V subunit 8A OS=Arabidopsis thaliana GN=NRPB...	[more]
RPAB3_DICDI	3.2e-19	44.12	DNA-directed RNA polymerases I, II, and III subunit rpabc3 OS=Dictyostelium disc...	[more]
RPAB3_HUMAN	7.2e-19	47.47	DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Homo sapiens GN=PO...	[more]
RPAB3_MOUSE	7.2e-19	47.47	DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Mus musculus GN=Po...	[more]

BLAST of Cla010901 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYV5_CUCSA	1.1e-53	98.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G011050 PE=4 SV=1	[more]
W9RPZ0_9ROSA	8.5e-43	77.27	DNA-directed RNA polymerases I, II, and III subunit RPABC3 OS=Morus notabilis GN...	[more]
M5WHF7_PRUPE	3.0e-40	75.45	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011397mg PE=4 SV=1	[more]
A0A058ZTI5_EUCGR	2.8e-38	69.57	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L01795 PE=4 SV=1	[more]
U5D4P8_AMBTC	6.3e-38	73.79	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00070p00019820 PE=4 SV=...	[more]

BLAST of Cla010901 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449468856\|ref\|XP_004152137.1\|	1.5e-53	98.18	PREDICTED: DNA-directed RNA polymerases II and V subunit 8A [Cucumis sativus]	[more]
gi\|659108210\|ref\|XP_008454076.1\|	2.0e-53	97.27	PREDICTED: DNA-directed RNA polymerases II and V subunit 8A-like [Cucumis melo]	[more]
gi\|1009112598\|ref\|XP_015869217.1\|	1.1e-43	81.82	PREDICTED: DNA-directed RNA polymerases II and V subunit 8A-like [Ziziphus jujub...	[more]
gi\|703116084\|ref\|XP_010101052.1\|	1.2e-42	77.27	DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Morus notabilis]	[more]
gi\|645241925\|ref\|XP_008227310.1\|	4.4e-40	75.45	PREDICTED: DNA-directed RNA polymerases II and V subunit 8A-like [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005570	RNA_pol_Rpb8
IPR012340	NA-bd_OB-fold

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0006383	transcription from RNA polymerase III promoter
biological_process	GO:0006366	transcription from RNA polymerase II promoter
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0009536	plastid
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005736	DNA-directed RNA polymerase I complex
cellular_component	GO:0005665	DNA-directed RNA polymerase II, core complex
cellular_component	GO:0005666	DNA-directed RNA polymerase III complex
molecular_function	GO:0003899	DNA-directed RNA polymerase activity
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU37007	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU43259	watermelon EST collection version 2.0	transcribed_cluster
WMU63963	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla010901	Cla010901.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU37007	WMU37007	transcribed_cluster
WMU43259	WMU43259	transcribed_cluster
WMU63963	WMU63963	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005570	RNA polymerase, Rpb8	PANTHER	PTHR10917	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3	coord: 1..105 score: 7.9
IPR005570	RNA polymerase, Rpb8	PFAM	PF03870	RNA_pol_Rpb8	coord: 7..103 score: 1.7
IPR005570	RNA polymerase, Rpb8	SMART	SM00658	rpol8neu	coord: 2..146 score: 3.8
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 2..104 score: 5.2
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 4..104 score: 1.71

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla010901	Cla97C07G142080	Watermelon (97103) v2	wmwmbB174
Cla010901	Csa4G011050	Cucumber (Chinese Long) v2	cuwmB313
Cla010901	MELO3C017775	Melon (DHL92) v3.5.1	mewmB507
Cla010901	ClCG07G015110	Watermelon (Charleston Gray)	wcgwmB372
Cla010901	CSPI04G02730	Wild cucumber (PI 183967)	cpiwmB316
Cla010901	Cucsa.095410	Cucumber (Gy14) v1	cgywmB118
Cla010901	CmaCh06G016980	Cucurbita maxima (Rimu)	cmawmB794
Cla010901	CmoCh06G016890	Cucurbita moschata (Rifu)	cmowmB788
Cla010901	CsGy4G002580	Cucumber (Gy14) v2	cgybwmB291
Cla010901	MELO3C017775.2	Melon (DHL92) v3.6.1	medwmB492
Cla010901	Carg15437	Silver-seed gourd	carwmB0690
Cla010901	CsaV3_4G002660	Cucumber (Chinese Long) v3	cucwmB325

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla010901	Cucurbita maxima (Rimu)	cmawmB235
Cla010901	Cucurbita moschata (Rifu)	cmowmB222
Cla010901	Cucurbita pepo (Zucchini)	cpewmB604
Cla010901	Cucurbita pepo (Zucchini)	cpewmB840
Cla010901	Bottle gourd (USVL1VR-Ls)	lsiwmB435
Cla010901	Silver-seed gourd	carwmB0121