Carg15234 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15234
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	hydroxyproline-rich glycoprotein family protein
Location	Cucurbita_argyrosperma_scaffold_073 : 492333 .. 494438 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCCATTGTCGATGACAGGACAGTGGGCATGAACTTCGAATGCAAAATCATAGAAGGGCAAATCCGAAATTTTTCGTAAAACGAGGGGCAAGTTAGGAGAAGAGTGAAACGGAAGACAAAGATCCAACGAGTTAAACATTGAACTCGGGTTGCGTGCGATCCGTTCACCACTCTTCGAACATTGTGGTTCAGTGAGCAAAGATCAAAATACCCTCTCGGCTTAAAGCAGAGAGGTAAAGCAAAATTCCTTCTCCAAATTTCTCTGCAACTCCTAAAGCCTCCTTCTTCTTTCTACATCGTCGACGCAAGATTTCCCTTCGCATTCAGAATGCCTATCAACAGTGAATCTACGCCGCCTCCGTTGATCGGAAAAATTGGACCCTACACCGTGTTTATGACCCCGCCGGCGACGCCTTCCCCGGCCTCTCAGCCTCCACCGGTGTTTGAGTCTCCTAAGAAGGTCATTCAACCGCCTCCCGTTCAGCCTCCGCCTCAGCAGTACGATAAGTCTGTGCCGAATGGGAATGCTTCTGTCGCTGGATTCTTCAGAAACGCCGTCTCTAAAGTGCAGAATGGTAATTTTTATAATGCGTTGCTCTGTTCTGGAAAATGACTCTGTGATTTGAGTTTCTTGTTTTTGCTTTATTTGAATGTAATGTTGGGATATTATGGCACCCGGGAGACAATTTGGTAGTAAGAACTGTATTAATGTTTGGGGAATTGGGGGAAGGAAGAGATTAAGAAAACTAAAGAAAATTAGTGGCAATTTTGCAGCACATTCAAGCTTGGATGATCATTTGGCACGCTGGTTGGGGTTAAATCAATCCAAGTATCAGTGGGCACTAGATGACTATTACGAGAGCAAGGGATTGGTATGCATCTGGTCAAATTCATAGCAGTAAACTGCATATTCTTGTGTCTTCTTTTCTGAAATTTATTGCTATTATTTCCCAAATCCTCTGATGTTCGTCCTTGACACATCCGTACGAGAGGGCTAAACTATAACAGCCTAAGCCCACCGCTAATAGATTTTGTCCACTTTAGTGCGTATGCTAGGGAGAGGTTTCCACTTCCTTAAAAGGAATGGTTCGTTTCCCTCTTCAACCGATGTGGGATCTTACATAGACTCTCTCCATGGTAGACACGTTTTAAAACCGTGAGGCTAATAGCAACTGTGAAGCTAATATCTGCTAGTGGTAGGCTTGCACTGTTACAAATGATATCAAAGCTAGACACCAGACAGTGTGCTATTGAGGACGTTGGGCCTCCAAAGGGGGAGGATTGTGAGATCCCACGTCGGTTGGAGAGGGGAACAAAACATTCCTTATAGAGGGTGGAAATCTCTCCCTAGTAGACGCGTTTTAAAACCATGAGACTGACGGTGCTACGTAACGAGCCAAAGCGGATAATATATATTAGTGATGAGCTTGAGCTGTTACCCCTATCGTTTATCGTTTCCCCTCCATATTCTATAATTTTGGCCAAATGATAAACTTTCATATGAAGCAAACTTGCAGTACTTTTATATGAAGTAACTTTGAAGTGAAGTATGTCCCTAACTTATGCTAAGTTTCCATGAAGTATTTCATTTATTTTCATTGAATGAAAGCATAGGATTAAGTAGTGCAGCTTATCTGCTTTCCGCTCTTGTTTTTCCATCTTGAATTCTAGCATCTTTTCCCAGGAAAATGGGGACATTAAAGCAAAGGAACAATTGAGCAAGGCCCAGAGCGTGTAACAGGTGCTAAAAACTGGCTCATGCTAACATGTTTGGTTTTGTTTTGATATCAAGAATCAAAATTATTATGCATTTGTAGGAACTCCCCAGCTTTGGACAGTAGAGAAACTATATACACCTTAACTATGCAATGAGTGAAGTGGATGTGGATCTGATTGTTTATAAGAATGCTGATGAAGAACTGGGCAGCCATCTTGGAATGTGATTCCGTCTACCTTATACGAAAAAATCGACACAATTTGGTCGTATCGTTGTCTCGTGTTTGATCTTTCTTTTGTTCTTTTGAAGCTAAACCTTTGGCTTATGTATTTTGAACTACTTTTTTTTGGTTATTTGTGTCCTTGTAATGAAGGCAATGTTTGGCTACA

mRNA sequence

AGCCATTGTCGATGACAGGACAGTGGGCATGAACTTCGAATGCAAAATCATAGAAGGGCAAATCCGAAATTTTTCGTAAAACGAGGGGCAAGTTAGGAGAAGAGTGAAACGGAAGACAAAGATCCAACGAGTTAAACATTGAACTCGGGTTGCGTGCGATCCGTTCACCACTCTTCGAACATTGTGGTTCAGTGAGCAAAGATCAAAATACCCTCTCGGCTTAAAGCAGAGAGGTAAAGCAAAATTCCTTCTCCAAATTTCTCTGCAACTCCTAAAGCCTCCTTCTTCTTTCTACATCGTCGACGCAAGATTTCCCTTCGCATTCAGAATGCCTATCAACAGTGAATCTACGCCGCCTCCGTTGATCGGAAAAATTGGACCCTACACCGTGTTTATGACCCCGCCGGCGACGCCTTCCCCGGCCTCTCAGCCTCCACCGGTGTTTGAGTCTCCTAAGAAGGTCATTCAACCGCCTCCCGTTCAGCCTCCGCCTCAGCAGTACGATAAGTCTGTGCCGAATGGGAATGCTTCTGTCGCTGGATTCTTCAGAAACGCCGTCTCTAAAGTGCAGAATGCACATTCAAGCTTGGATGATCATTTGGCACGCTGGTTGGGGTTAAATCAATCCAAGTATCAGTGGGCACTAGATGACTATTACGAGAGCAAGGGATTGGAAAATGGGGACATTAAAGCAAAGGAACAATTGAGCAAGGCCCAGAGCGTGTAACAGGAACTCCCCAGCTTTGGACAGTAGAGAAACTATATACACCTTAACTATGCAATGAGTGAAGTGGATGTGGATCTGATTGTTTATAAGAATGCTGATGAAGAACTGGGCAGCCATCTTGGAATGTGATTCCGTCTACCTTATACGAAAAAATCGACACAATTTGGTCGTATCGTTGTCTCGTGTTTGATCTTTCTTTTGTTCTTTTGAAGCTAAACCTTTGGCTTATGTATTTTGAACTACTTTTTTTTGGTTATTTGTGTCCTTGTAATGAAGGCAATGTTTGGCTACA

Coding sequence (CDS)

ATGCCTATCAACAGTGAATCTACGCCGCCTCCGTTGATCGGAAAAATTGGACCCTACACCGTGTTTATGACCCCGCCGGCGACGCCTTCCCCGGCCTCTCAGCCTCCACCGGTGTTTGAGTCTCCTAAGAAGGTCATTCAACCGCCTCCCGTTCAGCCTCCGCCTCAGCAGTACGATAAGTCTGTGCCGAATGGGAATGCTTCTGTCGCTGGATTCTTCAGAAACGCCGTCTCTAAAGTGCAGAATGCACATTCAAGCTTGGATGATCATTTGGCACGCTGGTTGGGGTTAAATCAATCCAAGTATCAGTGGGCACTAGATGACTATTACGAGAGCAAGGGATTGGAAAATGGGGACATTAAAGCAAAGGAACAATTGAGCAAGGCCCAGAGCGTGTAA

Protein sequence

MPINSESTPPPLIGKIGPYTVFMTPPATPSPASQPPPVFESPKKVIQPPPVQPPPQQYDKSVPNGNASVAGFFRNAVSKVQNAHSSLDDHLARWLGLNQSKYQWALDDYYESKGLENGDIKAKEQLSKAQSV

Homology

[Close]

BLAST of Carg15234 vs. NCBI nr
Match: XP_022921444.1 (branchpoint-bridging protein-like [Cucurbita moschata] >XP_022921445.1 branchpoint-bridging protein-like [Cucurbita moschata])

HSP 1 Score: 215.3 bits (547), Expect = 1.2e-52
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MPINSESTPPPLIGKIGPYTVFMTPPATPSPASQPXXXXXXXXXXXXXXXXXXXXXXYDK 60
           MPINSESTPPPLIGKIGPYTVFMTPPATPSPASQPXXXXXXXXXXXXXXXXXXXXXXYDK
Sbjct: 1   MPINSESTPPPLIGKIGPYTVFMTPPATPSPASQPXXXXXXXXXXXXXXXXXXXXXXYDK 60

Query: 61  SVPNGNASVAGFFRNAVSKVQNAHSSLDDHLARWLGLNQSKYQWALDDYYESKGLENGDI 120
           SVPNGNASVAGFFRNAVSKVQNAHSSLDDHLARWLGLNQSKYQWALDDYYESKGLENGDI
Sbjct: 61  SVPNGNASVAGFFRNAVSKVQNAHSSLDDHLARWLGLNQSKYQWALDDYYESKGLENGDI 120

Query: 121 KAKEQLSKAQSV 133
           KAKEQLSKAQSV
Sbjct: 121 KAKEQLSKAQSV 132

[Close]

BLAST of Carg15234 vs. NCBI nr
Match: XP_023515757.1 (branchpoint-bridging protein-like [Cucurbita pepo subsp. pepo] >XP_023515758.1 branchpoint-bridging protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213.0 bits (541), Expect = 6.1e-52
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MPINSESTPPPLIGKIGPYTVFMTPPATPSPASQPXXXXXXXXXXXXXXXXXXXXXXYDK 60
           MPINSESTPPPLIGKIGPYTVFMTPPATPSPASQPXXXXXXXXXXXXXXXXXXXXXXYDK
Sbjct: 1   MPINSESTPPPLIGKIGPYTVFMTPPATPSPASQPXXXXXXXXXXXXXXXXXXXXXXYDK 60

Query: 61  SVPNGNASVAGFFRNAVSKVQNAHSSLDDHLARWLGLNQSKYQWALDDYYESKGLENGDI 120
           SVPNGNASVAGFFRNAVSKVQNAHSSLDDHLARWLGLNQSKYQWALDDYYESKGLE GDI
Sbjct: 61  SVPNGNASVAGFFRNAVSKVQNAHSSLDDHLARWLGLNQSKYQWALDDYYESKGLETGDI 120

Query: 121 KAKEQLSKAQSV 133
           KAKEQLSKAQSV
Sbjct: 121 KAKEQLSKAQSV 132

[Close]

BLAST of Carg15234 vs. NCBI nr
Match: XP_022988430.1 (uncharacterized protein LOC111485680 isoform X2 [Cucurbita maxima])

HSP 1 Score: 210.7 bits (535), Expect = 3.0e-51
Identity = 130/132 (98.48%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MPINSESTPPPLIGKIGPYTVFMTPPATPSPASQPXXXXXXXXXXXXXXXXXXXXXXYDK 60
           MPINSESTPPPLIGKIGPYTVFMTPPATPSPASQ XXXXXXXXXXXXXXXXXXXXXXYD+
Sbjct: 1   MPINSESTPPPLIGKIGPYTVFMTPPATPSPASQXXXXXXXXXXXXXXXXXXXXXXXYDE 60

Query: 61  SVPNGNASVAGFFRNAVSKVQNAHSSLDDHLARWLGLNQSKYQWALDDYYESKGLENGDI 120
           SVPNGNASVAGFFRNAVSKVQNAHSSLDDHLARWLGLNQSKYQWALDDYYESKGLENGDI
Sbjct: 61  SVPNGNASVAGFFRNAVSKVQNAHSSLDDHLARWLGLNQSKYQWALDDYYESKGLENGDI 120

Query: 121 KAKEQLSKAQSV 133
           KAKEQLSKAQSV
Sbjct: 121 KAKEQLSKAQSV 132

[Close]

BLAST of Carg15234 vs. NCBI nr
Match: XP_022988429.1 (uncharacterized protein LOC111485680 isoform X1 [Cucurbita maxima])

HSP 1 Score: 210.7 bits (535), Expect = 3.0e-51
Identity = 130/132 (98.48%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MPINSESTPPPLIGKIGPYTVFMTPPATPSPASQPXXXXXXXXXXXXXXXXXXXXXXYDK 60
           MPINSESTPPPLIGKIGPYTVFMTPPATPSPASQ XXXXXXXXXXXXXXXXXXXXXXYD+
Sbjct: 1   MPINSESTPPPLIGKIGPYTVFMTPPATPSPASQXXXXXXXXXXXXXXXXXXXXXXXYDE 60

Query: 61  SVPNGNASVAGFFRNAVSKVQNAHSSLDDHLARWLGLNQSKYQWALDDYYESKGLENGDI 120
           SVPNGNASVAGFFRNAVSKVQNAHSSLDDHLARWLGLNQSKYQWALDDYYESKGLENGDI
Sbjct: 61  SVPNGNASVAGFFRNAVSKVQNAHSSLDDHLARWLGLNQSKYQWALDDYYESKGLENGDI 120

Query: 121 KAKEQLSKAQSV 133
           KAKEQLSKAQSV
Sbjct: 121 KAKEQLSKAQSV 132

[Close]

BLAST of Carg15234 vs. NCBI nr
Match: XP_004146326.1 (PREDICTED: wiskott-Aldrich syndrome protein family member 2 [Cucumis sativus] >XP_011656891.1 PREDICTED: wiskott-Aldrich syndrome protein family member 2 [Cucumis sativus] >KGN65468.1 hypothetical protein Csa_1G423260 [Cucumis sativus])

HSP 1 Score: 192.2 bits (487), Expect = 1.1e-45
Identity = 103/137 (75.18%), Postives = 107/137 (78.10%), Query Frame = 0


Query: 1   MPINSESTPPPLIGKIGPYTVFMTPPATPSPASQPXXXXXXXXXXXXXXXXXXXXXXYDK 60
           MPINSESTPPPLIGKIGPYTVFMTPP TPSP SQP                XXX   +DK
Sbjct: 1   MPINSESTPPPLIGKIGPYTVFMTPPPTPSPTSQPQPLFESPKKVIQPPPVXXXPHQFDK 60

Query: 61  S-----VPNGNASVAGFFRNAVSKVQNAHSSLDDHLARWLGLNQSKYQWALDDYYESKGL 120
           S     VPNGNASV+GFFRNAVSKVQNAHSSLDDHLARW GLNQSKYQWALDDYYESKG+
Sbjct: 61  SVSLAAVPNGNASVSGFFRNAVSKVQNAHSSLDDHLARWFGLNQSKYQWALDDYYESKGM 120

Query: 121 ENGDIKAKEQLSKAQSV 133
           E GD+KAKE  SKAQSV
Sbjct: 121 ETGDMKAKEPPSKAQSV 137

[Close]

BLAST of Carg15234 vs. TAIR10
Match: AT2G18910.1 (hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 142.1 bits (357), Expect = 2.4e-34
Identity = 86/133 (64.66%), Postives = 95/133 (71.43%), Query Frame = 0


Query: 1   MPINSE-STPPPLIGKIGPYTVFMTPPATPSPASQPXXXXXXXXXXXXXXXXXXXXXXYD 60
           MPIN + STPPP+IGKIGPYTVFMTPPATP P   P        XXXXXXXXX       
Sbjct: 1   MPINKDPSTPPPVIGKIGPYTVFMTPPATPKPPESPSAVSQKPVXXXXXXXXXQQFKSVA 60

Query: 61  KSVPNGNASVAGFFRNAVSKVQNAHSSLDDHLARWLGLNQSKYQWALDDYYESKGLENGD 120
            S  +G  SV GFF+NAV+KVQNAHSS+DDHL RW GLNQSKYQWALD+YYESK  +   
Sbjct: 61  SSDQDG--SVLGFFKNAVTKVQNAHSSVDDHLVRWFGLNQSKYQWALDEYYESKESDMKT 120

Query: 121 IKAKEQLSKAQSV 133
           +KAKE   K QSV
Sbjct: 121 VKAKEMPGKVQSV 131

[Close]

BLAST of Carg15234 vs. TrEMBL
Match: tr|A0A0A0LUN3|A0A0A0LUN3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423260 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 7.4e-46
Identity = 103/137 (75.18%), Postives = 107/137 (78.10%), Query Frame = 0


Query: 1   MPINSESTPPPLIGKIGPYTVFMTPPATPSPASQPXXXXXXXXXXXXXXXXXXXXXXYDK 60
           MPINSESTPPPLIGKIGPYTVFMTPP TPSP SQP                XXX   +DK
Sbjct: 1   MPINSESTPPPLIGKIGPYTVFMTPPPTPSPTSQPQPLFESPKKVIQPPPVXXXPHQFDK 60

Query: 61  S-----VPNGNASVAGFFRNAVSKVQNAHSSLDDHLARWLGLNQSKYQWALDDYYESKGL 120
           S     VPNGNASV+GFFRNAVSKVQNAHSSLDDHLARW GLNQSKYQWALDDYYESKG+
Sbjct: 61  SVSLAAVPNGNASVSGFFRNAVSKVQNAHSSLDDHLARWFGLNQSKYQWALDDYYESKGM 120

Query: 121 ENGDIKAKEQLSKAQSV 133
           E GD+KAKE  SKAQSV
Sbjct: 121 ETGDMKAKEPPSKAQSV 137

[Close]

BLAST of Carg15234 vs. TrEMBL
Match: tr|A0A1S3BXF0|A0A1S3BXF0_CUCME (uncharacterized protein LOC103494256 OS=Cucumis melo OX=3656 GN=LOC103494256 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 2.2e-45
Identity = 104/137 (75.91%), Postives = 108/137 (78.83%), Query Frame = 0


Query: 1   MPINSESTPPPLIGKIGPYTVFMTPPATPSPASQPXXXXXXXXXXXXXXXXXXXXXXYDK 60
           MPINSESTPPPLIGKIGPYTVFMTPP TPSP SQP               XXXXX  +DK
Sbjct: 1   MPINSESTPPPLIGKIGPYTVFMTPPPTPSPTSQPQPVFESPKKVIQPPPXXXXXHQFDK 60

Query: 61  S-----VPNGNASVAGFFRNAVSKVQNAHSSLDDHLARWLGLNQSKYQWALDDYYESKGL 120
           S     VPNGNASV+GFFRNAVSKVQNAHS LDDHLARW GLNQSKYQWALDDYYESKG+
Sbjct: 61  SVSLAAVPNGNASVSGFFRNAVSKVQNAHSRLDDHLARWFGLNQSKYQWALDDYYESKGM 120

Query: 121 ENGDIKAKEQLSKAQSV 133
           E GD+KAKE  SKAQSV
Sbjct: 121 ETGDMKAKEPSSKAQSV 137

[Close]

BLAST of Carg15234 vs. TrEMBL
Match: tr|A0A2P4MQU4|A0A2P4MQU4_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_67977 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 5.7e-38
Identity = 105/136 (77.21%), Postives = 113/136 (83.09%), Query Frame = 0


Query: 1   MPINSESTPPPLIGKIGPYTVFMTPPATPSPA--SQPXXXXXXXXXXXXXXXXXXXXXXY 60
           M IN +STPPP+IGKIGPYTVFMTPP+TPSP    QP     XXXXXXXXXXXXXXXXX+
Sbjct: 1   MAINRDSTPPPMIGKIGPYTVFMTPPSTPSPKPFQQPVFDSPXXXXXXXXXXXXXXXXXF 60

Query: 61  DKSV--PNGNASVAGFFRNAVSKVQNAHSSLDDHLARWLGLNQSKYQWALDDYYESKGLE 120
            KS+  PN N SV GFF+NAV+KVQNAHSSLDDHLARW GLNQSKYQWALDDYYESKGLE
Sbjct: 61  TKSLQSPNSNDSVVGFFKNAVTKVQNAHSSLDDHLARWFGLNQSKYQWALDDYYESKGLE 120

Query: 121 NGDIKAKEQLSKAQSV 133
            GD KAK+  SK QSV
Sbjct: 121 KGDAKAKDLSSKIQSV 136

[Close]

BLAST of Carg15234 vs. TrEMBL
Match: tr|I3T447|I3T447_LOTJA (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 7.0e-36
Identity = 82/133 (61.65%), Postives = 92/133 (69.17%), Query Frame = 0


Query: 1   MPINSESTPPPLIGKIGPYTVFMTPPATPSPASQPXXXXXXXXXXXXXXXXXXXXXXYDK 60
           M +NSESTPPP+IGKIGPYTVFMTPP+TP P+S                           
Sbjct: 1   MAVNSESTPPPVIGKIGPYTVFMTPPSTPKPSSPDPVPVHSPQKPPTKILPPPPQIQVPS 60

Query: 61  SVPN-GNASVAGFFRNAVSKVQNAHSSLDDHLARWLGLNQSKYQWALDDYYESKGLENGD 120
           S  +  + SV+GFFRNAV+KV NAHSSLDDHLARW GLNQSKYQWALDDYYESKG+E GD
Sbjct: 61  SAKSFSDGSVSGFFRNAVTKVHNAHSSLDDHLARWFGLNQSKYQWALDDYYESKGMEKGD 120

Query: 121 IKAKEQLSKAQSV 133
           +K KE  SK QSV
Sbjct: 121 VKVKEISSKVQSV 133

[Close]

BLAST of Carg15234 vs. TrEMBL
Match: tr|I1LVQ2|I1LVQ2_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100793586 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 9.1e-36
Identity = 85/132 (64.39%), Postives = 91/132 (68.94%), Query Frame = 0


Query: 1   MPINSESTPPPLIGKIGPYTVFMTPPATPSPASQPXXXXXXXXXXXXXXXXXXXXXXYDK 60
           M INSESTPPPLIGKIGPYTVFMTPP+TP P+                           K
Sbjct: 1   MSINSESTPPPLIGKIGPYTVFMTPPSTPKPSDD----HPVTTKIAPPPPQIPKAVPSPK 60

Query: 61  SVPNGNASVAGFFRNAVSKVQNAHSSLDDHLARWLGLNQSKYQWALDDYYESKGLENGDI 120
            V + + SV GFFRNAV+KVQ AHSSLDDHLARW GLNQSKYQWALDDYYESKG+E GDI
Sbjct: 61  PVSDPDDSVFGFFRNAVTKVQTAHSSLDDHLARWFGLNQSKYQWALDDYYESKGMEKGDI 120

Query: 121 KAKEQLSKAQSV 133
           K KE  SK QSV
Sbjct: 121 KVKEISSKVQSV 128

The following BLAST results are available for this feature:

BLAST of Carg15234 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022921444.1	1.2e-52	100.00	branchpoint-bridging protein-like [Cucurbita moschata] >XP_022921445.1 branchpoi...	[more]
XP_023515757.1	6.1e-52	99.24	branchpoint-bridging protein-like [Cucurbita pepo subsp. pepo] >XP_023515758.1 b...	[more]
XP_022988430.1	3.0e-51	98.48	uncharacterized protein LOC111485680 isoform X2 [Cucurbita maxima]	[more]
XP_022988429.1	3.0e-51	98.48	uncharacterized protein LOC111485680 isoform X1 [Cucurbita maxima]	[more]
XP_004146326.1	1.1e-45	75.18	PREDICTED: wiskott-Aldrich syndrome protein family member 2 [Cucumis sativus] >X...	[more]

BLAST of Carg15234 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G18910.1	2.4e-34	64.66	hydroxyproline-rich glycoprotein family protein	[more]

BLAST of Carg15234 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg15234 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LUN3\|A0A0A0LUN3_CUCSA	7.4e-46	75.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423260 PE=4 SV=1	[more]
tr\|A0A1S3BXF0\|A0A1S3BXF0_CUCME	2.2e-45	75.91	uncharacterized protein LOC103494256 OS=Cucumis melo OX=3656 GN=LOC103494256 PE=...	[more]
tr\|A0A2P4MQU4\|A0A2P4MQU4_QUESU	5.7e-38	77.21	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_67977 PE=4 SV=1	[more]
tr\|I3T447\|I3T447_LOTJA	7.0e-36	61.65	Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1	[more]
tr\|I1LVQ2\|I1LVQ2_SOYBN	9.1e-36	64.39	Uncharacterized protein OS=Glycine max OX=3847 GN=100793586 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15234-RA	Carg15234-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..65
None	No IPR available	PANTHER	PTHR37376	FAMILY NOT NAMED	coord: 1..130

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg15234	Cla018841	Watermelon (97103) v1	carwmB0789
Carg15234	Csa1G423260	Cucumber (Chinese Long) v2	carcuB0803
Carg15234	MELO3C017451	Melon (DHL92) v3.5.1	carmeB0785
Carg15234	ClCG06G013460	Watermelon (Charleston Gray)	carwcgB0764
Carg15234	CSPI01G20390	Wild cucumber (PI 183967)	carcpiB0822
Carg15234	Cucsa.081190	Cucumber (Gy14) v1	carcgyB0893
Carg15234	CmaCh11G003820	Cucurbita maxima (Rimu)	carcmaB1092
Carg15234	CmaCh10G003890	Cucurbita maxima (Rimu)	carcmaB1091
Carg15234	CmoCh11G003790	Cucurbita moschata (Rifu)	carcmoB1064
Carg15234	CmoCh10G004160	Cucurbita moschata (Rifu)	carcmoB1063
Carg15234	Lsi06G011880	Bottle gourd (USVL1VR-Ls)	carlsiB726
Carg15234	Cp4.1LG18g06350	Cucurbita pepo (Zucchini)	carcpeB1103
Carg15234	Cp4.1LG04g13180	Cucurbita pepo (Zucchini)	carcpeB1106
Carg15234	CsGy1G020200	Cucumber (Gy14) v2	carcgybB0779
Carg15234	MELO3C017451.2	Melon (DHL92) v3.6.1	carmedB0797
Carg15234	CsaV3_1G031720	Cucumber (Chinese Long) v3	carcucB0826
Carg15234	Cla97C06G122920	Watermelon (97103) v2	carwmbB0827
Carg15234	Bhi02G000557	Wax gourd	carwgoB0925

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg15234	Carg09034	Silver-seed gourd	carcarB537

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15234	Watermelon (Charleston Gray)	carwcgB0761
Carg15234	Watermelon (97103) v1	carwmB0787
Carg15234	Watermelon (97103) v2	carwmbB0824
Carg15234	Wax gourd	carwgoB0919
Carg15234	Cucumber (Gy14) v2	carcgybB0782
Carg15234	Cucumber (Gy14) v1	carcgyB0894
Carg15234	Cucurbita maxima (Rimu)	carcmaB1096
Carg15234	Cucurbita moschata (Rifu)	carcmoB1066
Carg15234	Cucurbita pepo (Zucchini)	carcpeB1102
Carg15234	Wild cucumber (PI 183967)	carcpiB0825
Carg15234	Cucumber (Chinese Long) v2	carcuB0806
Carg15234	Cucumber (Chinese Long) v3	carcucB0829
Carg15234	Bottle gourd (USVL1VR-Ls)	carlsiB723
Carg15234	Melon (DHL92) v3.5.1	carmeB0786
Carg15234	Melon (DHL92) v3.6.1	carmedB0798