Carg14825 (gene) Silver-seed gourd

NameCarg14825
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionProtein LITTLE ZIPPER
LocationCucurbita_argyrosperma_scaffold_079 : 180602 .. 181012 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCGATTCTTCTCGATTGAACCTCACTCGTTCGTTTTTAGATTCTCGCCATCGCCGCCGGCCGATTCGAGTTTACAGGCTTTTGAGGTGATTGATTTTTTTGTTCTTGATTTTCTGATTTGATTCTTCGGTTTCTCTGATTTTGTATTTACAGAGTTTGTGGTTTGTTTTCAGGAGGATGAGATTCAAGAAGGAAGAGGCGAATACGGCGGGCGTTAAGGTAGAGATGGAGATCAAGAATTTGAAACTGTACATGGAGAATCAGAGCATTATTGAGGAGAACGAGAGGCTGAGGAAGAAAGCGTTTCTTCTTCACAAAGAGAATCAGGTTTTGTTATCTCAACTCCAGAATTTCTCCAAGCAAAAACCACAGCCTAGCTCCAATTTGAGCGCCTGGCTCGAAAATTGA

mRNA sequence

ATGTGCGATTCTTCTCGATTGAACCTCACTCGTTCGTTTTTAGATTCTCGCCATCGCCGCCGGCCGATTCGAGTTTACAGGCTTTTGAGGAGGATGAGATTCAAGAAGGAAGAGGCGAATACGGCGGGCGTTAAGGTAGAGATGGAGATCAAGAATTTGAAACTGTACATGGAGAATCAGAGCATTATTGAGGAGAACGAGAGGCTGAGGAAGAAAGCGTTTCTTCTTCACAAAGAGAATCAGGTTTTGTTATCTCAACTCCAGAATTTCTCCAAGCAAAAACCACAGCCTAGCTCCAATTTGAGCGCCTGGCTCGAAAATTGA

Coding sequence (CDS)

ATGTGCGATTCTTCTCGATTGAACCTCACTCGTTCGTTTTTAGATTCTCGCCATCGCCGCCGGCCGATTCGAGTTTACAGGCTTTTGAGGAGGATGAGATTCAAGAAGGAAGAGGCGAATACGGCGGGCGTTAAGGTAGAGATGGAGATCAAGAATTTGAAACTGTACATGGAGAATCAGAGCATTATTGAGGAGAACGAGAGGCTGAGGAAGAAAGCGTTTCTTCTTCACAAAGAGAATCAGGTTTTGTTATCTCAACTCCAGAATTTCTCCAAGCAAAAACCACAGCCTAGCTCCAATTTGAGCGCCTGGCTCGAAAATTGA

Protein sequence

MCDSSRLNLTRSFLDSRHRRRPIRVYRLLRRMRFKKEEANTAGVKVEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQNFSKQKPQPSSNLSAWLEN
BLAST of Carg14825 vs. NCBI nr
Match: XP_022924351.1 (protein LITTLE ZIPPER 1-like [Cucurbita moschata])

HSP 1 Score: 203.4 bits (516), Expect = 3.9e-49
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0

Query: 1   MCDSSRLNLTRSFLDSRHRRRPIRVYRLLRRMRFKKEEANTAGVKVEMEIKNLKLYMENQ 60
           MCDSSRLNLTRSFLDSRHRRRPIRVYRLLRRMRFKKEEANTAGVKVEMEIKNLKLYMENQ
Sbjct: 1   MCDSSRLNLTRSFLDSRHRRRPIRVYRLLRRMRFKKEEANTAGVKVEMEIKNLKLYMENQ 60

Query: 61  SIIEENERLRKKAFLLHKENQVLLSQLQNFSKQKPQPSSNLSAWLEN 108
           SIIEENERLRKKAFLLHKENQVLLSQLQNFSKQKPQPSSNLSAWLEN
Sbjct: 61  SIIEENERLRKKAFLLHKENQVLLSQLQNFSKQKPQPSSNLSAWLEN 107

BLAST of Carg14825 vs. NCBI nr
Match: XP_022980450.1 (protein LITTLE ZIPPER 1-like [Cucurbita maxima])

HSP 1 Score: 201.8 bits (512), Expect = 1.1e-48
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 0

Query: 1   MCDSSRLNLTRSFLDSRHRRRPIRVYRLLRRMRFKKEEANTAGVKVEMEIKNLKLYMENQ 60
           MCDSSRLNLTRSFLDSRHRRRPIRVYRLLRRMRFKKEEANTAGVKVEMEIKNLKLYMENQ
Sbjct: 1   MCDSSRLNLTRSFLDSRHRRRPIRVYRLLRRMRFKKEEANTAGVKVEMEIKNLKLYMENQ 60

Query: 61  SIIEENERLRKKAFLLHKENQVLLSQLQNFSKQKPQPSSNLSAWLEN 108
           SIIEENERLRKKAFLLHKENQVLLSQLQNFSKQKPQP SNLSAWLEN
Sbjct: 61  SIIEENERLRKKAFLLHKENQVLLSQLQNFSKQKPQPGSNLSAWLEN 107

BLAST of Carg14825 vs. NCBI nr
Match: XP_023527865.1 (protein LITTLE ZIPPER 1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 200.7 bits (509), Expect = 2.6e-48
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 0

Query: 1   MCDSSRLNLTRSFLDSRHRRRPIRVYRLLRRMRFKKEEANTAGVKVEMEIKNLKLYMENQ 60
           MCDSSRLNLTRSFLDSRHRRRPIRVYRLLRRMRFKKEEANTAGVKVEMEIKNLKLYMENQ
Sbjct: 1   MCDSSRLNLTRSFLDSRHRRRPIRVYRLLRRMRFKKEEANTAGVKVEMEIKNLKLYMENQ 60

Query: 61  SIIEENERLRKKAFLLHKENQVLLSQLQNFSKQKPQPSSNLSAWLEN 108
           SIIEENERLRKKAFLLHKENQVLLSQLQNFSKQKP PSSNLSAWLEN
Sbjct: 61  SIIEENERLRKKAFLLHKENQVLLSQLQNFSKQKPLPSSNLSAWLEN 107

BLAST of Carg14825 vs. NCBI nr
Match: XP_023527864.1 (protein LITTLE ZIPPER 2-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146.0 bits (367), Expect = 7.5e-32
Identity = 77/80 (96.25%), Postives = 78/80 (97.50%), Query Frame = 0

Query: 28  LLRRMRFKKEEANTAGVKVEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQL 87
           + RRMRFKKEEANTAGVKVEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQL
Sbjct: 44  VFRRMRFKKEEANTAGVKVEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQL 103

Query: 88  QNFSKQKPQPSSNLSAWLEN 108
           QNFSKQKP PSSNLSAWLEN
Sbjct: 104 QNFSKQKPLPSSNLSAWLEN 123

BLAST of Carg14825 vs. NCBI nr
Match: KGN56585.1 (hypothetical protein Csa_3G125520 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 3.7e-31
Identity = 85/105 (80.95%), Postives = 89/105 (84.76%), Query Frame = 0

Query: 1   MCDSSRLNLTRSFLDSR-HRRRPIRVYRLLRRMRFKKEEANTAGVKVEMEIKNLKLYMEN 60
           MC SS   LT S+L  R  RRRP+RVY LLRRMRF KEEAN+AGVKVEMEIKNLKLYMEN
Sbjct: 1   MCHSSPFILTPSYLACRQRRRRPVRVYSLLRRMRFAKEEANSAGVKVEMEIKNLKLYMEN 60

Query: 61  QSIIEENERLRKKAFLLHKENQVLLSQLQNFSKQK-PQPSSNLSA 104
           QSIIEENERLRKKAFLLHKENQVLLSQLQNFS  K P  SS+LSA
Sbjct: 61  QSIIEENERLRKKAFLLHKENQVLLSQLQNFSHYKPPHSSSDLSA 105

BLAST of Carg14825 vs. TAIR10
Match: AT2G45450.1 (protein binding)

HSP 1 Score: 60.5 bits (145), Expect = 7.5e-10
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 0

Query: 23  IRVYRLLRRMRFKKEEANTAGVKVEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQV 82
           +R+ RL RR R  +EE        +ME+ NLKLY+ENQ+II ENE+L+KKA LLH+EN+ 
Sbjct: 69  VRIPRLSRRRRMWREEK-------KMEMINLKLYVENQNIIRENEKLKKKALLLHQENKT 127

Query: 83  LLSQLQ 89
           L S LQ
Sbjct: 129 LFSLLQ 127

BLAST of Carg14825 vs. TAIR10
Match: AT3G52770.1 (protein binding)

HSP 1 Score: 42.4 bits (98), Expect = 2.1e-04
Identity = 24/37 (64.86%), Postives = 30/37 (81.08%), Query Frame = 0

Query: 48 MEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLL 85
          ME  N KL++EN  I++ENERLRKKA LL++ENQ LL
Sbjct: 1  MERLNSKLFVENCYIMKENERLRKKAELLNQENQQLL 37

BLAST of Carg14825 vs. Swiss-Prot
Match: sp|F4IG60|ZPR1_ARATH (Protein LITTLE ZIPPER 1 OS=Arabidopsis thaliana OX=3702 GN=ZPR1 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-08
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 0

Query: 23  IRVYRLLRRMRFKKEEANTAGVKVEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQV 82
           +R+ RL RR R  +EE        +ME+ NLKLY+ENQ+II ENE+L+KKA LLH+EN+ 
Sbjct: 69  VRIPRLSRRRRMWREEK-------KMEMINLKLYVENQNIIRENEKLKKKALLLHQENKT 127

Query: 83  LLSQLQ 89
           L S LQ
Sbjct: 129 LFSLLQ 127

BLAST of Carg14825 vs. Swiss-Prot
Match: sp|Q9LZX5|ZPR2_ARATH (Protein LITTLE ZIPPER 2 OS=Arabidopsis thaliana OX=3702 GN=ZPR2 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.2e-06
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 0

Query: 47 EMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQL 88
          EME++NLKL++ENQSII ENE L+KKA LLH EN  L + L
Sbjct: 52 EMEMRNLKLFVENQSIIRENEALKKKALLLHHENNALFALL 92

BLAST of Carg14825 vs. Swiss-Prot
Match: sp|Q56WL5|ZPR4_ARATH (Protein LITTLE ZIPPER 4 OS=Arabidopsis thaliana OX=3702 GN=ZPR4 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.9e-04
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 0

Query: 48 MEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQL-QNFSK 93
          ME  N KLY++N  II+ENERLRKKA +L++ENQ LL +L Q  SK
Sbjct: 1  MERLNSKLYLQNCYIIKENERLRKKAQILNQENQQLLFELKQKLSK 46

BLAST of Carg14825 vs. TrEMBL
Match: tr|A0A0A0L3S0|A0A0A0L3S0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G125520 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.5e-31
Identity = 85/105 (80.95%), Postives = 89/105 (84.76%), Query Frame = 0

Query: 1   MCDSSRLNLTRSFLDSR-HRRRPIRVYRLLRRMRFKKEEANTAGVKVEMEIKNLKLYMEN 60
           MC SS   LT S+L  R  RRRP+RVY LLRRMRF KEEAN+AGVKVEMEIKNLKLYMEN
Sbjct: 1   MCHSSPFILTPSYLACRQRRRRPVRVYSLLRRMRFAKEEANSAGVKVEMEIKNLKLYMEN 60

Query: 61  QSIIEENERLRKKAFLLHKENQVLLSQLQNFSKQK-PQPSSNLSA 104
           QSIIEENERLRKKAFLLHKENQVLLSQLQNFS  K P  SS+LSA
Sbjct: 61  QSIIEENERLRKKAFLLHKENQVLLSQLQNFSHYKPPHSSSDLSA 105

BLAST of Carg14825 vs. TrEMBL
Match: tr|A0A2N9JBG7|A0A2N9JBG7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61836 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.1e-12
Identity = 54/94 (57.45%), Postives = 63/94 (67.02%), Query Frame = 0

Query: 9   LTRSFLDSR-HRRRPIRVYRLLRRMRFKKEEANTAGVKVEMEIKNLKLYMENQSIIEENE 68
           LT SF   R  +R  +RV RL RR R  KEE     VK EMEIKN+KLYM N+SIIEENE
Sbjct: 13  LTSSFRHPRLSKRHNLRVVRLNRRRRLLKEEKMRV-VKAEMEIKNMKLYMANRSIIEENE 72

Query: 69  RLRKKAFLLHKENQVLLSQLQNFSKQKPQPSSNL 102
           +LR+KA LLH+ENQ LL QLQN    + Q   +L
Sbjct: 73  KLRQKALLLHQENQALLFQLQNKQSHEKQKQQSL 105

BLAST of Carg14825 vs. TrEMBL
Match: tr|A0A2P5AFA9|A0A2P5AFA9_PARAD (Protein LITTLE ZIPPER OS=Parasponia andersonii OX=3476 GN=PanWU01x14_338220 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.0e-12
Identity = 47/73 (64.38%), Postives = 55/73 (75.34%), Query Frame = 0

Query: 17 RHRRRPIRVYRLLRRMRFKKEEANTAGVKVEMEIKNLKLYMENQSIIEENERLRKKAFLL 76
          R RRRP + Y L  +   +K +    GVK EMEIKNLKLYMENQ+I+EEN +LRKKA LL
Sbjct: 22 RLRRRPSKRYNLRVQGLNRKRKLAMVGVKTEMEIKNLKLYMENQTIMEENLKLRKKALLL 81

Query: 77 HKENQVLLSQLQN 90
          H+ENQ LLSQLQN
Sbjct: 82 HQENQALLSQLQN 94

BLAST of Carg14825 vs. TrEMBL
Match: tr|A0A2P5RFN8|A0A2P5RFN8_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD17458 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.3e-12
Identity = 43/69 (62.32%), Postives = 53/69 (76.81%), Query Frame = 0

Query: 20 RRPIRVYRLLRRMRFKKEEANTAGVKVEMEIKNLKLYMENQSIIEENERLRKKAFLLHKE 79
          R  +RV RL R  R + ++    G+K +MEIKNLKLYMENQ II+ENE+LRKKA LLH+E
Sbjct: 17 RHNVRVPRLNRLRRLRTKKMGAVGIKTDMEIKNLKLYMENQIIIQENEKLRKKALLLHQE 76

Query: 80 NQVLLSQLQ 89
          NQ LL+QLQ
Sbjct: 77 NQTLLAQLQ 85

BLAST of Carg14825 vs. TrEMBL
Match: tr|A0A1U8K349|A0A1U8K349_GOSHI (protein LITTLE ZIPPER 3-like OS=Gossypium hirsutum OX=3635 GN=LOC107911920 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.7e-11
Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = 0

Query: 20 RRPIRVYRLLRRMRFKKEEANTAGVKVEMEIKNLKLYMENQSIIEENERLRKKAFLLHKE 79
          R  +RV RL R  R + ++    G+K +MEIKNLKLYMENQ II+EN++LRKKA LLH+E
Sbjct: 17 RHNVRVPRLNRLRRLRTKKMGAVGIKTDMEIKNLKLYMENQIIIQENKKLRKKALLLHQE 76

Query: 80 NQVLLSQLQNFSKQKPQPS 99
          NQ LL+QLQ      P  S
Sbjct: 77 NQTLLAQLQKKLCNPPNQS 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022924351.13.9e-49100.00protein LITTLE ZIPPER 1-like [Cucurbita moschata][more]
XP_022980450.11.1e-4899.07protein LITTLE ZIPPER 1-like [Cucurbita maxima][more]
XP_023527865.12.6e-4899.07protein LITTLE ZIPPER 1-like isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023527864.17.5e-3296.25protein LITTLE ZIPPER 2-like isoform X1 [Cucurbita pepo subsp. pepo][more]
KGN56585.13.7e-3180.95hypothetical protein Csa_3G125520 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
AT2G45450.17.5e-1054.55protein binding[more]
AT3G52770.12.1e-0464.86protein binding[more]
Match NameE-valueIdentityDescription
sp|F4IG60|ZPR1_ARATH1.3e-0854.55Protein LITTLE ZIPPER 1 OS=Arabidopsis thaliana OX=3702 GN=ZPR1 PE=1 SV=1[more]
sp|Q9LZX5|ZPR2_ARATH2.2e-0665.85Protein LITTLE ZIPPER 2 OS=Arabidopsis thaliana OX=3702 GN=ZPR2 PE=1 SV=1[more]
sp|Q56WL5|ZPR4_ARATH5.9e-0460.87Protein LITTLE ZIPPER 4 OS=Arabidopsis thaliana OX=3702 GN=ZPR4 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
tr|A0A0A0L3S0|A0A0A0L3S0_CUCSA2.5e-3180.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G125520 PE=4 SV=1[more]
tr|A0A2N9JBG7|A0A2N9JBG7_FAGSY1.1e-1257.45Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61836 PE=4 SV=1[more]
tr|A0A2P5AFA9|A0A2P5AFA9_PARAD2.0e-1264.38Protein LITTLE ZIPPER OS=Parasponia andersonii OX=3476 GN=PanWU01x14_338220 PE=4... [more]
tr|A0A2P5RFN8|A0A2P5RFN8_GOSBA3.3e-1262.32Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD17458 PE=4 SV... [more]
tr|A0A1U8K349|A0A1U8K349_GOSHI1.7e-1155.70protein LITTLE ZIPPER 3-like OS=Gossypium hirsutum OX=3635 GN=LOC107911920 PE=4 ... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR039312ZPR
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg14825-RACarg14825-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..107
NoneNo IPR availablePANTHERPTHR33601:SF1PROTEIN LITTLE ZIPPER 1-RELATEDcoord: 16..94
IPR039312Protein LITTLE ZIPPERPANTHERPTHR33601FAMILY NOT NAMEDcoord: 16..94

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg14825Cla021296Watermelon (97103) v1carwmB0617
Carg14825Cla011523Watermelon (97103) v1carwmB0618
Carg14825Csa3G125520Cucumber (Chinese Long) v2carcuB0644
Carg14825MELO3C006178Melon (DHL92) v3.5.1carmeB0622
Carg14825MELO3C005596Melon (DHL92) v3.5.1carmeB0620
Carg14825ClCG05G002130Watermelon (Charleston Gray)carwcgB0602
Carg14825CSPI05G06180Wild cucumber (PI 183967)carcpiB0652
Carg14825CSPI03G09430Wild cucumber (PI 183967)carcpiB0651
Carg14825Cucsa.257750Cucumber (Gy14) v1carcgyB0693
Carg14825Cucsa.302430Cucumber (Gy14) v1carcgyB0694
Carg14825CmaCh14G019880Cucurbita maxima (Rimu)carcmaB0874
Carg14825CmaCh06G011260Cucurbita maxima (Rimu)carcmaB0877
Carg14825CmaCh15G011780Cucurbita maxima (Rimu)carcmaB0875
Carg14825CmoCh06G011520Cucurbita moschata (Rifu)carcmoB0852
Carg14825CmoCh14G020480Cucurbita moschata (Rifu)carcmoB0850
Carg14825Lsi05G019720Bottle gourd (USVL1VR-Ls)carlsiB565
Carg14825Cp4.1LG03g17070Cucurbita pepo (Zucchini)carcpeB0884
Carg14825Cp4.1LG08g01720Cucurbita pepo (Zucchini)carcpeB0885
Carg14825CsGy3G009510Cucumber (Gy14) v2carcgybB0617
Carg14825CsGy5G003510Cucumber (Gy14) v2carcgybB0618
Carg14825MELO3C006178.2Melon (DHL92) v3.6.1carmedB0629
Carg14825MELO3C005596.2Melon (DHL92) v3.6.1carmedB0627
Carg14825CsaV3_5G003580Cucumber (Chinese Long) v3carcucB0653
Carg14825CsaV3_3G009560Cucumber (Chinese Long) v3carcucB0652
Carg14825Cla97C05G082620Watermelon (97103) v2carwmbB0647
Carg14825Bhi01G000198Wax gourdcarwgoB0739
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg14825Carg23897Silver-seed gourdcarcarB474