CmoCh14G020480 (gene) Cucurbita moschata (Rifu)

NameCmoCh14G020480
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Descriptionprotein binding
LocationCmo_Chr14 : 14963183 .. 14964133 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTTTGCCATCATGAGTCTTACTGTAATCATTGCAATGGAAAGCCTCTCTTTCTCTCTCTTCTGCCATTTCCCTTTTTGTTCGTCTCTCTTCTATTTATACTTCCAATCTCCTTCTCCGCCATTGCTAACCAGTTCTTCCAAGTCGACCTTCTCTGCAGCAGCAGCCGAAATATGTGCGATTCTTCTCGATTGAACCTCACTCGTTCGTTTTTAGATTCTCGCCATCGCCGCCGGCCGATTCGAGTTTACAGGCTTTTGAGGTGATTGATTTTTTTGTTCTTGATTTTCTGATTTGATTCTTCGGTTTCTCTGATTTTGTATTTACAGAGTTTGTGGTTTGTTTTCAGGAGGATGAGATTCAAGAAGGAAGAGGCGAATACGGCGGGCGTTAAGGTAGAGATGGAGATCAAGAATTTGAAACTGTACATGGAGAATCAGAGCATTATTGAGGAGAACGAGAGGCTGAGGAAGAAAGCGTTTCTTCTTCACAAAGAGAATCAGGTTTTGTTATCTCAACTCCAGAATTTCTCCAAGCAAAAACCACAGCCTAGCTCCAATTTGAGCGCCTGGCTCGAAAATTGAAAATCGTCTGTAACAAAGAATCAAGTAGAGGATCTCTCAACCTTTGATAACTTTCTTGCTTCCGATTTCTTTCTTTCTTTCTTTTTTCCTACGATTCCTTGGTATGTAATCTGTTATTTTGACAATAAGTTAGGTTTAGATCTTGAGGGGAGGGGAATAAGGGTAAAATTCAGTTATTAGGGGATAGATTTTCAGAACATAGTGATGTTATGAAGTATCATGAAGCAAAACTCTGTAGTCTGTACTGTAAAATTCGATCTATCGAAATTCTCCATTGATGAACCTTTGTTTGTGTGATCAAACTCCATTGAAGAAGCTTGGTTGGTGCTTTGTTCAAGAACGCGTTGCGACTCTCTCGCTCCTTAAAA

mRNA sequence

CCTTTGCCATCATGAGTCTTACTGTAATCATTGCAATGGAAAGCCTCTCTTTCTCTCTCTTCTGCCATTTCCCTTTTTGTTCGTCTCTCTTCTATTTATACTTCCAATCTCCTTCTCCGCCATTGCTAACCAGTTCTTCCAAGTCGACCTTCTCTGCAGCAGCAGCCGAAATATGTGCGATTCTTCTCGATTGAACCTCACTCGTTCGTTTTTAGATTCTCGCCATCGCCGCCGGCCGATTCGAGTTTACAGGCTTTTGAGGAGGATGAGATTCAAGAAGGAAGAGGCGAATACGGCGGGCGTTAAGGTAGAGATGGAGATCAAGAATTTGAAACTGTACATGGAGAATCAGAGCATTATTGAGGAGAACGAGAGGCTGAGGAAGAAAGCGTTTCTTCTTCACAAAGAGAATCAGGTTTTGTTATCTCAACTCCAGAATTTCTCCAAGCAAAAACCACAGCCTAGCTCCAATTTGAGCGCCTGGCTCGAAAATTGAAAATCGTCTGTAACAAAGAATCAAGTAGAGGATCTCTCAACCTTTGATAACTTTCTTGCTTCCGATTTCTTTCTTTCTTTCTTTTTTCCTACGATTCCTTGGTATGTAATCTGTTATTTTGACAATAAGTTAGGTTTAGATCTTGAGGGGAGGGGAATAAGGGTAAAATTCAGTTATTAGGGGATAGATTTTCAGAACATAGTGATGTTATGAAGTATCATGAAGCAAAACTCTGTAGTCTGTACTGTAAAATTCGATCTATCGAAATTCTCCATTGATGAACCTTTGTTTGTGTGATCAAACTCCATTGAAGAAGCTTGGTTGGTGCTTTGTTCAAGAACGCGTTGCGACTCTCTCGCTCCTTAAAA

Coding sequence (CDS)

ATGTGCGATTCTTCTCGATTGAACCTCACTCGTTCGTTTTTAGATTCTCGCCATCGCCGCCGGCCGATTCGAGTTTACAGGCTTTTGAGGAGGATGAGATTCAAGAAGGAAGAGGCGAATACGGCGGGCGTTAAGGTAGAGATGGAGATCAAGAATTTGAAACTGTACATGGAGAATCAGAGCATTATTGAGGAGAACGAGAGGCTGAGGAAGAAAGCGTTTCTTCTTCACAAAGAGAATCAGGTTTTGTTATCTCAACTCCAGAATTTCTCCAAGCAAAAACCACAGCCTAGCTCCAATTTGAGCGCCTGGCTCGAAAATTGA
BLAST of CmoCh14G020480 vs. Swiss-Prot
Match: ZPR1_ARATH (Protein LITTLE ZIPPER 1 OS=Arabidopsis thaliana GN=ZPR1 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-08
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 1

Query: 23  IRVYRLLRRMRFKKEEANTAGVKVEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQV 82
           +R+ RL RR R  +EE        +ME+ NLKLY+ENQ+II ENE+L+KKA LLH+EN+ 
Sbjct: 69  VRIPRLSRRRRMWREEK-------KMEMINLKLYVENQNIIRENEKLKKKALLLHQENKT 127

Query: 83  LLSQLQ 89
           L S LQ
Sbjct: 129 LFSLLQ 127

BLAST of CmoCh14G020480 vs. Swiss-Prot
Match: ZPR2_ARATH (Protein LITTLE ZIPPER 2 OS=Arabidopsis thaliana GN=ZPR2 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-07
Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = 1

Query: 23 IRVYRLLRRMRFKKEEANTAGVKVEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQV 82
          +R+  L RR R  KE+        EME++NLKL++ENQSII ENE L+KKA LLH EN  
Sbjct: 35 LRILNLTRRRRLLKEQK-------EMEMRNLKLFVENQSIIRENEALKKKALLLHHENNA 92

Query: 83 LLSQL 88
          L + L
Sbjct: 95 LFALL 92

BLAST of CmoCh14G020480 vs. TrEMBL
Match: A0A0A0L3S0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G125520 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.3e-31
Identity = 85/105 (80.95%), Postives = 89/105 (84.76%), Query Frame = 1

Query: 1   MCDSSRLNLTRSFLDSRHRRR-PIRVYRLLRRMRFKKEEANTAGVKVEMEIKNLKLYMEN 60
           MC SS   LT S+L  R RRR P+RVY LLRRMRF KEEAN+AGVKVEMEIKNLKLYMEN
Sbjct: 1   MCHSSPFILTPSYLACRQRRRRPVRVYSLLRRMRFAKEEANSAGVKVEMEIKNLKLYMEN 60

Query: 61  QSIIEENERLRKKAFLLHKENQVLLSQLQNFSKQK-PQPSSNLSA 104
           QSIIEENERLRKKAFLLHKENQVLLSQLQNFS  K P  SS+LSA
Sbjct: 61  QSIIEENERLRKKAFLLHKENQVLLSQLQNFSHYKPPHSSSDLSA 105

BLAST of CmoCh14G020480 vs. TrEMBL
Match: W9QSF5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022450 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.0e-12
Identity = 54/96 (56.25%), Postives = 65/96 (67.71%), Query Frame = 1

Query: 1  MCDSSRLNLT-RSFLDSRHRRRPIRVYRL----LRRMRFKKEEAN---TAGVKVEMEIKN 60
          MC +S   L  ++F  S  RRR  + Y L    L R+R  K+ A+     G KVEMEI N
Sbjct: 1  MCMNSSERLPGKTFYSSFRRRRLSKRYNLRVHGLNRLRKLKKGADYGKIVGTKVEMEINN 60

Query: 61 LKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQ 89
          LKLYMENQSI+EEN++LRKKA LLH+ENQ LLSQLQ
Sbjct: 61 LKLYMENQSIMEENQKLRKKALLLHQENQALLSQLQ 96

BLAST of CmoCh14G020480 vs. TrEMBL
Match: B9IC13_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s06690g PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 8.9e-12
Identity = 46/67 (68.66%), Postives = 52/67 (77.61%), Query Frame = 1

Query: 23 IRVYRLLRRMRFKK-EEANTAGVKVEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQ 82
          +R +RL RR R  K +      VK EMEIKNLKLYMEN+SIIEENE+LRKKAFLLH+ENQ
Sbjct: 30 LRYHRLNRRRRLSKGKRVALVLVKKEMEIKNLKLYMENKSIIEENEKLRKKAFLLHQENQ 89

Query: 83 VLLSQLQ 89
           LL QLQ
Sbjct: 90 ALLYQLQ 96

BLAST of CmoCh14G020480 vs. TrEMBL
Match: A0A0D2SA08_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G092100 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-11
Identity = 44/79 (55.70%), Postives = 54/79 (68.35%), Query Frame = 1

Query: 20 RRPIRVYRLLRRMRFKKEEANTAGVKVEMEIKNLKLYMENQSIIEENERLRKKAFLLHKE 79
          R  +RV RL R  R + ++    G+K +ME KNLKLYMENQ II+ENE+LRKKA LLH+E
Sbjct: 17 RHNVRVPRLNRLRRLRTKKMGAVGIKTDMEKKNLKLYMENQIIIQENEKLRKKALLLHQE 76

Query: 80 NQVLLSQLQNFSKQKPQPS 99
          NQ LL+QLQ      P  S
Sbjct: 77 NQTLLAQLQKKLCNPPNQS 95

BLAST of CmoCh14G020480 vs. TrEMBL
Match: M5X3G0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020346mg PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.4e-11
Identity = 48/77 (62.34%), Postives = 55/77 (71.43%), Query Frame = 1

Query: 20 RRP-----IRVYRLLRRMRFKKEE---ANTAGVKVEMEIKNLKLYMENQSIIEENERLRK 79
          RRP      RV+RL+ R R   +E   A   G KVEMEIKNLKLYMENQSIIEEN++LR+
Sbjct: 14 RRPSNQHNFRVHRLINRKRKTAKEPKGAEIGGAKVEMEIKNLKLYMENQSIIEENKKLRR 73

Query: 80 KAFLLHKENQVLLSQLQ 89
          KA LL +ENQ L SQLQ
Sbjct: 74 KALLLVQENQALFSQLQ 90

BLAST of CmoCh14G020480 vs. TAIR10
Match: AT2G45450.1 (AT2G45450.1 protein binding)

HSP 1 Score: 60.5 bits (145), Expect = 7.5e-10
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 1

Query: 23  IRVYRLLRRMRFKKEEANTAGVKVEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQV 82
           +R+ RL RR R  +EE        +ME+ NLKLY+ENQ+II ENE+L+KKA LLH+EN+ 
Sbjct: 69  VRIPRLSRRRRMWREEK-------KMEMINLKLYVENQNIIRENEKLKKKALLLHQENKT 127

Query: 83  LLSQLQ 89
           L S LQ
Sbjct: 129 LFSLLQ 127

BLAST of CmoCh14G020480 vs. TAIR10
Match: AT3G60890.2 (AT3G60890.2 protein binding)

HSP 1 Score: 53.5 bits (127), Expect = 9.1e-08
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 1

Query: 30 RRMRFKKEEANTAGVKVEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQL 88
          RR R  KE+        EME++NLKL++ENQSII ENE L+KKA LLH EN  L + L
Sbjct: 43 RRRRLLKEQK-------EMEMRNLKLFVENQSIIRENEALKKKALLLHHENNALFALL 93

BLAST of CmoCh14G020480 vs. NCBI nr
Match: gi|659075441|ref|XP_008438145.1| (PREDICTED: uncharacterized protein LOC103483340 [Cucumis melo])

HSP 1 Score: 148.7 bits (374), Expect = 5.9e-33
Identity = 87/106 (82.08%), Postives = 91/106 (85.85%), Query Frame = 1

Query: 1   MCDSSRLNLTRSFLDSRH--RRRPIRVYRLLRRMRFKKEEANTAGVKVEMEIKNLKLYME 60
           MC SSR  LT S+L  RH  RRRP+RVY LLRRMRF  EEAN+AGVKVEMEIKNLKLYME
Sbjct: 1   MCHSSRFILTPSYLACRHHRRRRPVRVYSLLRRMRFATEEANSAGVKVEMEIKNLKLYME 60

Query: 61  NQSIIEENERLRKKAFLLHKENQVLLSQLQNFSKQK-PQPSSNLSA 104
           NQSIIEENERLRKKAFLLHKENQVLLSQLQNFS  K PQ SS+LSA
Sbjct: 61  NQSIIEENERLRKKAFLLHKENQVLLSQLQNFSDYKPPQSSSDLSA 106

BLAST of CmoCh14G020480 vs. NCBI nr
Match: gi|700201452|gb|KGN56585.1| (hypothetical protein Csa_3G125520 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 1.9e-31
Identity = 85/105 (80.95%), Postives = 89/105 (84.76%), Query Frame = 1

Query: 1   MCDSSRLNLTRSFLDSRHRRR-PIRVYRLLRRMRFKKEEANTAGVKVEMEIKNLKLYMEN 60
           MC SS   LT S+L  R RRR P+RVY LLRRMRF KEEAN+AGVKVEMEIKNLKLYMEN
Sbjct: 1   MCHSSPFILTPSYLACRQRRRRPVRVYSLLRRMRFAKEEANSAGVKVEMEIKNLKLYMEN 60

Query: 61  QSIIEENERLRKKAFLLHKENQVLLSQLQNFSKQK-PQPSSNLSA 104
           QSIIEENERLRKKAFLLHKENQVLLSQLQNFS  K P  SS+LSA
Sbjct: 61  QSIIEENERLRKKAFLLHKENQVLLSQLQNFSHYKPPHSSSDLSA 105

BLAST of CmoCh14G020480 vs. NCBI nr
Match: gi|703085867|ref|XP_010092855.1| (hypothetical protein L484_022450 [Morus notabilis])

HSP 1 Score: 79.0 bits (193), Expect = 5.8e-12
Identity = 54/96 (56.25%), Postives = 65/96 (67.71%), Query Frame = 1

Query: 1  MCDSSRLNLT-RSFLDSRHRRRPIRVYRL----LRRMRFKKEEAN---TAGVKVEMEIKN 60
          MC +S   L  ++F  S  RRR  + Y L    L R+R  K+ A+     G KVEMEI N
Sbjct: 1  MCMNSSERLPGKTFYSSFRRRRLSKRYNLRVHGLNRLRKLKKGADYGKIVGTKVEMEINN 60

Query: 61 LKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQ 89
          LKLYMENQSI+EEN++LRKKA LLH+ENQ LLSQLQ
Sbjct: 61 LKLYMENQSIMEENQKLRKKALLLHQENQALLSQLQ 96

BLAST of CmoCh14G020480 vs. NCBI nr
Match: gi|224130018|ref|XP_002320732.1| (hypothetical protein POPTR_0014s06690g [Populus trichocarpa])

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-11
Identity = 46/67 (68.66%), Postives = 52/67 (77.61%), Query Frame = 1

Query: 23 IRVYRLLRRMRFKK-EEANTAGVKVEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQ 82
          +R +RL RR R  K +      VK EMEIKNLKLYMEN+SIIEENE+LRKKAFLLH+ENQ
Sbjct: 30 LRYHRLNRRRRLSKGKRVALVLVKKEMEIKNLKLYMENKSIIEENEKLRKKAFLLHQENQ 89

Query: 83 VLLSQLQ 89
           LL QLQ
Sbjct: 90 ALLYQLQ 96

BLAST of CmoCh14G020480 vs. NCBI nr
Match: gi|657949434|ref|XP_008343114.1| (PREDICTED: uncharacterized protein LOC103405871 [Malus domestica])

HSP 1 Score: 77.0 bits (188), Expect = 2.2e-11
Identity = 53/99 (53.54%), Postives = 63/99 (63.64%), Query Frame = 1

Query: 1  MCDSSRLNLTRSFLDSRHRRRP-----IRVYRLLRRMRFKK------EEANTAGVKVEME 60
          MC +S L+ +     S   RRP      RV RL+ R   +K      +EA T G KVEME
Sbjct: 1  MCLNSELSPSSPLYSSFRLRRPSKQHSFRVRRLINRNWKRKPAGPAAKEAETGGAKVEME 60

Query: 61 IKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQ 89
          +KNLKLYMENQSIIEEN +LR+KA LL +ENQ L SQLQ
Sbjct: 61 MKNLKLYMENQSIIEENIKLRRKALLLVQENQALFSQLQ 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ZPR1_ARATH1.3e-0854.55Protein LITTLE ZIPPER 1 OS=Arabidopsis thaliana GN=ZPR1 PE=1 SV=1[more]
ZPR2_ARATH1.1e-0752.31Protein LITTLE ZIPPER 2 OS=Arabidopsis thaliana GN=ZPR2 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0L3S0_CUCSA1.3e-3180.95Uncharacterized protein OS=Cucumis sativus GN=Csa_3G125520 PE=4 SV=1[more]
W9QSF5_9ROSA4.0e-1256.25Uncharacterized protein OS=Morus notabilis GN=L484_022450 PE=4 SV=1[more]
B9IC13_POPTR8.9e-1268.66Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s06690g PE=4 SV=1[more]
A0A0D2SA08_GOSRA2.0e-1155.70Uncharacterized protein OS=Gossypium raimondii GN=B456_007G092100 PE=4 SV=1[more]
M5X3G0_PRUPE3.4e-1162.34Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020346mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G45450.17.5e-1054.55 protein binding[more]
AT3G60890.29.1e-0855.17 protein binding[more]
Match NameE-valueIdentityDescription
gi|659075441|ref|XP_008438145.1|5.9e-3382.08PREDICTED: uncharacterized protein LOC103483340 [Cucumis melo][more]
gi|700201452|gb|KGN56585.1|1.9e-3180.95hypothetical protein Csa_3G125520 [Cucumis sativus][more]
gi|703085867|ref|XP_010092855.1|5.8e-1256.25hypothetical protein L484_022450 [Morus notabilis][more]
gi|224130018|ref|XP_002320732.1|1.3e-1168.66hypothetical protein POPTR_0014s06690g [Populus trichocarpa][more]
gi|657949434|ref|XP_008343114.1|2.2e-1153.54PREDICTED: uncharacterized protein LOC103405871 [Malus domestica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G020480.1CmoCh14G020480.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33601FAMILY NOT NAMEDcoord: 1..89
score: 6.4
NoneNo IPR availablePANTHERPTHR33601:SF1LITTLE ZIPPER 1 PROTEIN-RELATEDcoord: 1..89
score: 6.4

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh14G020480CmoCh06G011520Cucurbita moschata (Rifu)cmocmoB224