CmoCh14G020480 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCTTTGCCATCATGAGTCTTACTGTAATCATTGCAATGGAAAGCCTCTCTTTCTCTCTCTTCTGCCATTTCCCTTTTTGTTCGTCTCTCTTCTATTTATACTTCCAATCTCCTTCTCCGCCATTGCTAACCAGTTCTTCCAAGTCGACCTTCTCTGCAGCAGCAGCCGAAATATGTGCGATTCTTCTCGATTGAACCTCACTCGTTCGTTTTTAGATTCTCGCCATCGCCGCCGGCCGATTCGAGTTTACAGGCTTTTGAGGTGATTGATTTTTTTGTTCTTGATTTTCTGATTTGATTCTTCGGTTTCTCTGATTTTGTATTTACAGAGTTTGTGGTTTGTTTTCAGGAGGATGAGATTCAAGAAGGAAGAGGCGAATACGGCGGGCGTTAAGGTAGAGATGGAGATCAAGAATTTGAAACTGTACATGGAGAATCAGAGCATTATTGAGGAGAACGAGAGGCTGAGGAAGAAAGCGTTTCTTCTTCACAAAGAGAATCAGGTTTTGTTATCTCAACTCCAGAATTTCTCCAAGCAAAAACCACAGCCTAGCTCCAATTTGAGCGCCTGGCTCGAAAATTGAAAATCGTCTGTAACAAAGAATCAAGTAGAGGATCTCTCAACCTTTGATAACTTTCTTGCTTCCGATTTCTTTCTTTCTTTCTTTTTTCCTACGATTCCTTGGTATGTAATCTGTTATTTTGACAATAAGTTAGGTTTAGATCTTGAGGGGAGGGGAATAAGGGTAAAATTCAGTTATTAGGGGATAGATTTTCAGAACATAGTGATGTTATGAAGTATCATGAAGCAAAACTCTGTAGTCTGTACTGTAAAATTCGATCTATCGAAATTCTCCATTGATGAACCTTTGTTTGTGTGATCAAACTCCATTGAAGAAGCTTGGTTGGTGCTTTGTTCAAGAACGCGTTGCGACTCTCTCGCTCCTTAAAA CCTTTGCCATCATGAGTCTTACTGTAATCATTGCAATGGAAAGCCTCTCTTTCTCTCTCTTCTGCCATTTCCCTTTTTGTTCGTCTCTCTTCTATTTATACTTCCAATCTCCTTCTCCGCCATTGCTAACCAGTTCTTCCAAGTCGACCTTCTCTGCAGCAGCAGCCGAAATATGTGCGATTCTTCTCGATTGAACCTCACTCGTTCGTTTTTAGATTCTCGCCATCGCCGCCGGCCGATTCGAGTTTACAGGCTTTTGAGGAGGATGAGATTCAAGAAGGAAGAGGCGAATACGGCGGGCGTTAAGGTAGAGATGGAGATCAAGAATTTGAAACTGTACATGGAGAATCAGAGCATTATTGAGGAGAACGAGAGGCTGAGGAAGAAAGCGTTTCTTCTTCACAAAGAGAATCAGGTTTTGTTATCTCAACTCCAGAATTTCTCCAAGCAAAAACCACAGCCTAGCTCCAATTTGAGCGCCTGGCTCGAAAATTGAAAATCGTCTGTAACAAAGAATCAAGTAGAGGATCTCTCAACCTTTGATAACTTTCTTGCTTCCGATTTCTTTCTTTCTTTCTTTTTTCCTACGATTCCTTGGTATGTAATCTGTTATTTTGACAATAAGTTAGGTTTAGATCTTGAGGGGAGGGGAATAAGGGTAAAATTCAGTTATTAGGGGATAGATTTTCAGAACATAGTGATGTTATGAAGTATCATGAAGCAAAACTCTGTAGTCTGTACTGTAAAATTCGATCTATCGAAATTCTCCATTGATGAACCTTTGTTTGTGTGATCAAACTCCATTGAAGAAGCTTGGTTGGTGCTTTGTTCAAGAACGCGTTGCGACTCTCTCGCTCCTTAAAA ATGTGCGATTCTTCTCGATTGAACCTCACTCGTTCGTTTTTAGATTCTCGCCATCGCCGCCGGCCGATTCGAGTTTACAGGCTTTTGAGGAGGATGAGATTCAAGAAGGAAGAGGCGAATACGGCGGGCGTTAAGGTAGAGATGGAGATCAAGAATTTGAAACTGTACATGGAGAATCAGAGCATTATTGAGGAGAACGAGAGGCTGAGGAAGAAAGCGTTTCTTCTTCACAAAGAGAATCAGGTTTTGTTATCTCAACTCCAGAATTTCTCCAAGCAAAAACCACAGCCTAGCTCCAATTTGAGCGCCTGGCTCGAAAATTGA
BLAST of CmoCh14G020480 vs. Swiss-Prot
Match: ZPR1_ARATH (Protein LITTLE ZIPPER 1 OS=Arabidopsis thaliana GN=ZPR1 PE=1 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 1.3e-08 Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 1
BLAST of CmoCh14G020480 vs. Swiss-Prot
Match: ZPR2_ARATH (Protein LITTLE ZIPPER 2 OS=Arabidopsis thaliana GN=ZPR2 PE=1 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 1.1e-07 Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = 1
BLAST of CmoCh14G020480 vs. TrEMBL
Match: A0A0A0L3S0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G125520 PE=4 SV=1) HSP 1 Score: 143.7 bits (361), Expect = 1.3e-31 Identity = 85/105 (80.95%), Postives = 89/105 (84.76%), Query Frame = 1
BLAST of CmoCh14G020480 vs. TrEMBL
Match: W9QSF5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022450 PE=4 SV=1) HSP 1 Score: 79.0 bits (193), Expect = 4.0e-12 Identity = 54/96 (56.25%), Postives = 65/96 (67.71%), Query Frame = 1
BLAST of CmoCh14G020480 vs. TrEMBL
Match: B9IC13_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s06690g PE=4 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 8.9e-12 Identity = 46/67 (68.66%), Postives = 52/67 (77.61%), Query Frame = 1
BLAST of CmoCh14G020480 vs. TrEMBL
Match: A0A0D2SA08_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G092100 PE=4 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 2.0e-11 Identity = 44/79 (55.70%), Postives = 54/79 (68.35%), Query Frame = 1
BLAST of CmoCh14G020480 vs. TrEMBL
Match: M5X3G0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020346mg PE=4 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 3.4e-11 Identity = 48/77 (62.34%), Postives = 55/77 (71.43%), Query Frame = 1
BLAST of CmoCh14G020480 vs. TAIR10
Match: AT2G45450.1 (AT2G45450.1 protein binding) HSP 1 Score: 60.5 bits (145), Expect = 7.5e-10 Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 1
BLAST of CmoCh14G020480 vs. TAIR10
Match: AT3G60890.2 (AT3G60890.2 protein binding) HSP 1 Score: 53.5 bits (127), Expect = 9.1e-08 Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 1
BLAST of CmoCh14G020480 vs. NCBI nr
Match: gi|659075441|ref|XP_008438145.1| (PREDICTED: uncharacterized protein LOC103483340 [Cucumis melo]) HSP 1 Score: 148.7 bits (374), Expect = 5.9e-33 Identity = 87/106 (82.08%), Postives = 91/106 (85.85%), Query Frame = 1
BLAST of CmoCh14G020480 vs. NCBI nr
Match: gi|700201452|gb|KGN56585.1| (hypothetical protein Csa_3G125520 [Cucumis sativus]) HSP 1 Score: 143.7 bits (361), Expect = 1.9e-31 Identity = 85/105 (80.95%), Postives = 89/105 (84.76%), Query Frame = 1
BLAST of CmoCh14G020480 vs. NCBI nr
Match: gi|703085867|ref|XP_010092855.1| (hypothetical protein L484_022450 [Morus notabilis]) HSP 1 Score: 79.0 bits (193), Expect = 5.8e-12 Identity = 54/96 (56.25%), Postives = 65/96 (67.71%), Query Frame = 1
BLAST of CmoCh14G020480 vs. NCBI nr
Match: gi|224130018|ref|XP_002320732.1| (hypothetical protein POPTR_0014s06690g [Populus trichocarpa]) HSP 1 Score: 77.8 bits (190), Expect = 1.3e-11 Identity = 46/67 (68.66%), Postives = 52/67 (77.61%), Query Frame = 1
BLAST of CmoCh14G020480 vs. NCBI nr
Match: gi|657949434|ref|XP_008343114.1| (PREDICTED: uncharacterized protein LOC103405871 [Malus domestica]) HSP 1 Score: 77.0 bits (188), Expect = 2.2e-11 Identity = 53/99 (53.54%), Postives = 63/99 (63.64%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: |