MELO3C006178 (gene) Melon (DHL92) v3.5.1

NameMELO3C006178
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionClass III homeobox-leucine zipper protein
Locationchr6 : 1513952 .. 1514964 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCCCCCCCCCTTGCCATCATGAGTCCTACTCTCATCATTGCTATGGAAAAAAAACCCCTCTTTTTCTCTCTCTTCTTTCTCAATTTCCCCTTCTATTTATACTCTCAATCCCCCATTCTCCCCCATTGCTAACAATTTCTCCACCTTCATACCTCCTCAATCATGTGCCATTCTTCCCGATTCATCCTCACTCCTTCCTATTTAGCCTGCCGCCACCATCGACGGCGGCGCCCCGTTCGAGTTTACAGCCTCTTGAGGTGATTGATTTTATTTTATTTCATTTTCATTTTTCTTCTGATTCTCTGGTATTTACTGAGTTCTTTTTTCTTTTTTATTATTATTATTATTATTAATCGTTTTCAGAAGGATGAGATTCGCAACGGAAGAAGCGAATTCGGCCGGCGTTAAGGTAGAAATGGAGATCAAGAATTTGAAACTGTATATGGAGAATCAAAGCATTATTGAAGAGAACGAGAGATTGAGAAAGAAAGCGTTTCTTCTTCACAAAGAGAATCAGGTTTTGTTATCTCAGCTTCAGAATTTCTCCGACTATAAACCACCGCAGTCTAGCTCCGATTTGAGTGCCTGCAGTTGGGAAAGTAAACAAAATCATCTGTAGCGAATGAATCAAGTAGATGATTCTTCAATCTTTGATAAAATTTTCTTGCTAGTGATTTCTTTTTTTTTTTTTATTTTCCTACGATTCCTTGGTTTGTAATCTGTTATTTTGACAATAAATTAGGTTTTTGATTTTGAGGGGAAGGGAATAAAGGGTAGAATTTGGTTATTAGGGGATAGATTTTGAGAATATAGTTTATGTGATGAAATATTATGGAGCAAAACTCTGTTAGTAGTTTGTACCGTTAAATTCGATGTTATCTAAATTCTCCATTGATGAAACAAATTTCATCCATTGAAGAAGCTTTGGTTGGTTTGATCTTGAAGCTGGAGAATGATTTGGTATTTTATCCTACAACTTGAATCAAATTGGTGATACAATGGGCCTTCTATG

mRNA sequence

CCCCCCCCCCCTTGCCATCATGAGTCCTACTCTCATCATTGCTATGGAAAAAAAACCCCTCTTTTTCTCTCTCTTCTTTCTCAATTTCCCCTTCTATTTATACTCTCAATCCCCCATTCTCCCCCATTGCTAACAATTTCTCCACCTTCATACCTCCTCAATCATGTGCCATTCTTCCCGATTCATCCTCACTCCTTCCTATTTAGCCTGCCGCCACCATCGACGGCGGCGCCCCGTTCGAGTTTACAGCCTCTTGAGAAGGATGAGATTCGCAACGGAAGAAGCGAATTCGGCCGGCGTTAAGGTAGAAATGGAGATCAAGAATTTGAAACTGTATATGGAGAATCAAAGCATTATTGAAGAGAACGAGAGATTGAGAAAGAAAGCGTTTCTTCTTCACAAAGAGAATCAGGTTTTGTTATCTCAGCTTCAGAATTTCTCCGACTATAAACCACCGCAGTCTAGCTCCGATTTGAGTGCCTGCAGTTGGGAAAGTAAACAAAATCATCTGTAGCGAATGAATCAAGTAGATGATTCTTCAATCTTTGATAAAATTTTCTTGCTAGTGATTTCTTTTTTTTTTTTTATTTTCCTACGATTCCTTGGTTTGTAATCTGTTATTTTGACAATAAATTAGGTTTTTGATTTTGAGGGGAAGGGAATAAAGGGTAGAATTTGGTTATTAGGGGATAGATTTTGAGAATATAGTTTATGTGATGAAATATTATGGAGCAAAACTCTGTTAGTAGTTTGTACCGTTAAATTCGATGTTATCTAAATTCTCCATTGATGAAACAAATTTCATCCATTGAAGAAGCTTTGGTTGGTTTGATCTTGAAGCTGGAGAATGATTTGGTATTTTATCCTACAACTTGAATCAAATTGGTGATACAATGGGCCTTCTATG

Coding sequence (CDS)

ATGTGCCATTCTTCCCGATTCATCCTCACTCCTTCCTATTTAGCCTGCCGCCACCATCGACGGCGGCGCCCCGTTCGAGTTTACAGCCTCTTGAGAAGGATGAGATTCGCAACGGAAGAAGCGAATTCGGCCGGCGTTAAGGTAGAAATGGAGATCAAGAATTTGAAACTGTATATGGAGAATCAAAGCATTATTGAAGAGAACGAGAGATTGAGAAAGAAAGCGTTTCTTCTTCACAAAGAGAATCAGGTTTTGTTATCTCAGCTTCAGAATTTCTCCGACTATAAACCACCGCAGTCTAGCTCCGATTTGAGTGCCTGCAGTTGGGAAAGTAAACAAAATCATCTGTAG

Protein sequence

MCHSSRFILTPSYLACRHHRRRRPVRVYSLLRRMRFATEEANSAGVKVEMEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQLQNFSDYKPPQSSSDLSACSWESKQNHL*
BLAST of MELO3C006178 vs. Swiss-Prot
Match: ZPR1_ARATH (Protein LITTLE ZIPPER 1 OS=Arabidopsis thaliana GN=ZPR1 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.5e-10
Identity = 44/92 (47.83%), Postives = 56/92 (60.87%), Query Frame = 1

Query: 1   MCHSSR--FILTPSYLACRHHRRRRPVRVYSLLRRMRFATEEANSAGVKVEMEIKNLKLY 60
           MC SS   F  TP+ L   + + +  VR+  L RR R   EE        +ME+ NLKLY
Sbjct: 44  MCLSSSETFSDTPTRLVL-YLKTQSHVRIPRLSRRRRMWREEK-------KMEMINLKLY 103

Query: 61  MENQSIIEENERLRKKAFLLHKENQVLLSQLQ 91
           +ENQ+II ENE+L+KKA LLH+EN+ L S LQ
Sbjct: 104 VENQNIIRENEKLKKKALLLHQENKTLFSLLQ 127

BLAST of MELO3C006178 vs. Swiss-Prot
Match: ZPR2_ARATH (Protein LITTLE ZIPPER 2 OS=Arabidopsis thaliana GN=ZPR2 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-09
Identity = 39/97 (40.21%), Postives = 54/97 (55.67%), Query Frame = 1

Query: 10  TPSYLACRHHRRRRP-----VRVYSLLRRMRFATEEANSAGVKVEMEIKNLKLYMENQSI 69
           TP+  +  +H + +      +R+ +L RR R   E+        EME++NLKL++ENQSI
Sbjct: 15  TPTMRSASYHIKHKSKTQTHLRILNLTRRRRLLKEQK-------EMEMRNLKLFVENQSI 74

Query: 70  IEENERLRKKAFLLHKENQVLLSQLQNFSDYKPPQSS 102
           I ENE L+KKA LLH EN  L + L     Y P  +S
Sbjct: 75  IRENEALKKKALLLHHENNALFALLH--PKYSPVSTS 102

BLAST of MELO3C006178 vs. TrEMBL
Match: A0A0A0L3S0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G125520 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 3.9e-53
Identity = 110/116 (94.83%), Postives = 110/116 (94.83%), Query Frame = 1

Query: 1   MCHSSRFILTPSYLACRHHRRRRPVRVYSLLRRMRFATEEANSAGVKVEMEIKNLKLYME 60
           MCHSS FILTPSYLACR  RRRRPVRVYSLLRRMRFA EEANSAGVKVEMEIKNLKLYME
Sbjct: 1   MCHSSPFILTPSYLACRQ-RRRRPVRVYSLLRRMRFAKEEANSAGVKVEMEIKNLKLYME 60

Query: 61  NQSIIEENERLRKKAFLLHKENQVLLSQLQNFSDYKPPQSSSDLSACSWESKQNHL 117
           NQSIIEENERLRKKAFLLHKENQVLLSQLQNFS YKPP SSSDLSACSWESKQNHL
Sbjct: 61  NQSIIEENERLRKKAFLLHKENQVLLSQLQNFSHYKPPHSSSDLSACSWESKQNHL 115

BLAST of MELO3C006178 vs. TrEMBL
Match: A0A0D2SA08_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G092100 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.1e-14
Identity = 47/84 (55.95%), Postives = 57/84 (67.86%), Query Frame = 1

Query: 17  RHHRRRRPVRVYSLLRRMRFATEEANSAGVKVEMEIKNLKLYMENQSIIEENERLRKKAF 76
           R  + R  VRV  L R  R  T++  + G+K +ME KNLKLYMENQ II+ENE+LRKKA 
Sbjct: 12  RQSKLRHNVRVPRLNRLRRLRTKKMGAVGIKTDMEKKNLKLYMENQIIIQENEKLRKKAL 71

Query: 77  LLHKENQVLLSQLQNFSDYKPPQS 101
           LLH+ENQ LL+QLQ      P QS
Sbjct: 72  LLHQENQTLLAQLQKKLCNPPNQS 95

BLAST of MELO3C006178 vs. TrEMBL
Match: W9QSF5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022450 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.7e-14
Identity = 46/78 (58.97%), Postives = 56/78 (71.79%), Query Frame = 1

Query: 20 RRRRPVRVYSL-------LRRMRFATEEANSAGVKVEMEIKNLKLYMENQSIIEENERLR 79
          RRRR  + Y+L       LR+++   +     G KVEMEI NLKLYMENQSI+EEN++LR
Sbjct: 19 RRRRLSKRYNLRVHGLNRLRKLKKGADYGKIVGTKVEMEINNLKLYMENQSIMEENQKLR 78

Query: 80 KKAFLLHKENQVLLSQLQ 91
          KKA LLH+ENQ LLSQLQ
Sbjct: 79 KKALLLHQENQALLSQLQ 96

BLAST of MELO3C006178 vs. TrEMBL
Match: A0A0B2RB66_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_005163 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-13
Identity = 45/77 (58.44%), Postives = 56/77 (72.73%), Query Frame = 1

Query: 17 RHHRRRRPVRVYSLLRR---MRFATEEANSAGVKVEMEIKNLKLYMENQSIIEENERLRK 76
          RHH   R +R+  L RR   ++ A +      VK E+++KNLKLYMENQ+IIEENE+LRK
Sbjct: 22 RHHHNHRHLRLGMLNRRRAHLKEARQRKRIVVVKSEIQMKNLKLYMENQTIIEENEKLRK 81

Query: 77 KAFLLHKENQVLLSQLQ 91
          +A LLHKENQ LLSQLQ
Sbjct: 82 QAMLLHKENQALLSQLQ 98

BLAST of MELO3C006178 vs. TrEMBL
Match: I1L6T7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G268100 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-13
Identity = 45/77 (58.44%), Postives = 56/77 (72.73%), Query Frame = 1

Query: 17 RHHRRRRPVRVYSLLRR---MRFATEEANSAGVKVEMEIKNLKLYMENQSIIEENERLRK 76
          RHH   R +R+  L RR   ++ A +      VK E+++KNLKLYMENQ+IIEENE+LRK
Sbjct: 22 RHHHNHRHLRLGMLNRRRAHLKEARQRKRIVVVKSEIQMKNLKLYMENQTIIEENEKLRK 81

Query: 77 KAFLLHKENQVLLSQLQ 91
          +A LLHKENQ LLSQLQ
Sbjct: 82 QAMLLHKENQALLSQLQ 98

BLAST of MELO3C006178 vs. TAIR10
Match: AT2G45450.1 (AT2G45450.1 protein binding)

HSP 1 Score: 65.9 bits (159), Expect = 1.9e-11
Identity = 44/92 (47.83%), Postives = 56/92 (60.87%), Query Frame = 1

Query: 1   MCHSSR--FILTPSYLACRHHRRRRPVRVYSLLRRMRFATEEANSAGVKVEMEIKNLKLY 60
           MC SS   F  TP+ L   + + +  VR+  L RR R   EE        +ME+ NLKLY
Sbjct: 44  MCLSSSETFSDTPTRLVL-YLKTQSHVRIPRLSRRRRMWREEK-------KMEMINLKLY 103

Query: 61  MENQSIIEENERLRKKAFLLHKENQVLLSQLQ 91
           +ENQ+II ENE+L+KKA LLH+EN+ L S LQ
Sbjct: 104 VENQNIIRENEKLKKKALLLHQENKTLFSLLQ 127

BLAST of MELO3C006178 vs. TAIR10
Match: AT3G60890.2 (AT3G60890.2 protein binding)

HSP 1 Score: 60.8 bits (146), Expect = 6.3e-10
Identity = 38/97 (39.18%), Postives = 53/97 (54.64%), Query Frame = 1

Query: 10  TPSYLACRHHRRRRP-----VRVYSLLRRMRFATEEANSAGVKVEMEIKNLKLYMENQSI 69
           TP+  +  +H + +      +R+ +L  R R   +E        EME++NLKL++ENQSI
Sbjct: 15  TPTMRSASYHIKHKSKTQTHLRILNLTSRRRRLLKEQK------EMEMRNLKLFVENQSI 74

Query: 70  IEENERLRKKAFLLHKENQVLLSQLQNFSDYKPPQSS 102
           I ENE L+KKA LLH EN  L + L     Y P  +S
Sbjct: 75  IRENEALKKKALLLHHENNALFALLH--PKYSPVSTS 103

BLAST of MELO3C006178 vs. TAIR10
Match: AT3G52770.1 (AT3G52770.1 protein binding)

HSP 1 Score: 49.3 bits (116), Expect = 1.9e-06
Identity = 30/55 (54.55%), Postives = 36/55 (65.45%), Query Frame = 1

Query: 50  MEIKNLKLYMENQSIIEENERLRKKAFLLHKENQVLLSQL-QNFSDYKPPQSSSD 104
           ME  N KL++EN  I++ENERLRKKA LL++ENQ LL QL Q  S  K   + S+
Sbjct: 1   MERLNSKLFVENCYIMKENERLRKKAELLNQENQQLLFQLKQKLSKTKNSNNGSN 55

BLAST of MELO3C006178 vs. NCBI nr
Match: gi|659075441|ref|XP_008438145.1| (PREDICTED: uncharacterized protein LOC103483340 [Cucumis melo])

HSP 1 Score: 235.7 bits (600), Expect = 4.0e-59
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1

Query: 1   MCHSSRFILTPSYLACRHHRRRRPVRVYSLLRRMRFATEEANSAGVKVEMEIKNLKLYME 60
           MCHSSRFILTPSYLACRHHRRRRPVRVYSLLRRMRFATEEANSAGVKVEMEIKNLKLYME
Sbjct: 1   MCHSSRFILTPSYLACRHHRRRRPVRVYSLLRRMRFATEEANSAGVKVEMEIKNLKLYME 60

Query: 61  NQSIIEENERLRKKAFLLHKENQVLLSQLQNFSDYKPPQSSSDLSACSWESKQNHL 117
           NQSIIEENERLRKKAFLLHKENQVLLSQLQNFSDYKPPQSSSDLSACSWESKQNHL
Sbjct: 61  NQSIIEENERLRKKAFLLHKENQVLLSQLQNFSDYKPPQSSSDLSACSWESKQNHL 116

BLAST of MELO3C006178 vs. NCBI nr
Match: gi|700201452|gb|KGN56585.1| (hypothetical protein Csa_3G125520 [Cucumis sativus])

HSP 1 Score: 215.3 bits (547), Expect = 5.6e-53
Identity = 110/116 (94.83%), Postives = 110/116 (94.83%), Query Frame = 1

Query: 1   MCHSSRFILTPSYLACRHHRRRRPVRVYSLLRRMRFATEEANSAGVKVEMEIKNLKLYME 60
           MCHSS FILTPSYLACR  RRRRPVRVYSLLRRMRFA EEANSAGVKVEMEIKNLKLYME
Sbjct: 1   MCHSSPFILTPSYLACRQ-RRRRPVRVYSLLRRMRFAKEEANSAGVKVEMEIKNLKLYME 60

Query: 61  NQSIIEENERLRKKAFLLHKENQVLLSQLQNFSDYKPPQSSSDLSACSWESKQNHL 117
           NQSIIEENERLRKKAFLLHKENQVLLSQLQNFS YKPP SSSDLSACSWESKQNHL
Sbjct: 61  NQSIIEENERLRKKAFLLHKENQVLLSQLQNFSHYKPPHSSSDLSACSWESKQNHL 115

BLAST of MELO3C006178 vs. NCBI nr
Match: gi|823186236|ref|XP_012489789.1| (PREDICTED: uncharacterized protein LOC105802609 [Gossypium raimondii])

HSP 1 Score: 86.7 bits (213), Expect = 3.0e-14
Identity = 47/84 (55.95%), Postives = 57/84 (67.86%), Query Frame = 1

Query: 17  RHHRRRRPVRVYSLLRRMRFATEEANSAGVKVEMEIKNLKLYMENQSIIEENERLRKKAF 76
           R  + R  VRV  L R  R  T++  + G+K +ME KNLKLYMENQ II+ENE+LRKKA 
Sbjct: 12  RQSKLRHNVRVPRLNRLRRLRTKKMGAVGIKTDMEKKNLKLYMENQIIIQENEKLRKKAL 71

Query: 77  LLHKENQVLLSQLQNFSDYKPPQS 101
           LLH+ENQ LL+QLQ      P QS
Sbjct: 72  LLHQENQTLLAQLQKKLCNPPNQS 95

BLAST of MELO3C006178 vs. NCBI nr
Match: gi|703085867|ref|XP_010092855.1| (hypothetical protein L484_022450 [Morus notabilis])

HSP 1 Score: 85.5 bits (210), Expect = 6.7e-14
Identity = 46/78 (58.97%), Postives = 56/78 (71.79%), Query Frame = 1

Query: 20 RRRRPVRVYSL-------LRRMRFATEEANSAGVKVEMEIKNLKLYMENQSIIEENERLR 79
          RRRR  + Y+L       LR+++   +     G KVEMEI NLKLYMENQSI+EEN++LR
Sbjct: 19 RRRRLSKRYNLRVHGLNRLRKLKKGADYGKIVGTKVEMEINNLKLYMENQSIMEENQKLR 78

Query: 80 KKAFLLHKENQVLLSQLQ 91
          KKA LLH+ENQ LLSQLQ
Sbjct: 79 KKALLLHQENQALLSQLQ 96

BLAST of MELO3C006178 vs. NCBI nr
Match: gi|356532085|ref|XP_003534604.1| (PREDICTED: protein LITTLE ZIPPER 2 [Glycine max])

HSP 1 Score: 84.0 bits (206), Expect = 2.0e-13
Identity = 45/77 (58.44%), Postives = 56/77 (72.73%), Query Frame = 1

Query: 17 RHHRRRRPVRVYSLLRR---MRFATEEANSAGVKVEMEIKNLKLYMENQSIIEENERLRK 76
          RHH   R +R+  L RR   ++ A +      VK E+++KNLKLYMENQ+IIEENE+LRK
Sbjct: 22 RHHHNHRHLRLGMLNRRRAHLKEARQRKRIVVVKSEIQMKNLKLYMENQTIIEENEKLRK 81

Query: 77 KAFLLHKENQVLLSQLQ 91
          +A LLHKENQ LLSQLQ
Sbjct: 82 QAMLLHKENQALLSQLQ 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ZPR1_ARATH3.5e-1047.83Protein LITTLE ZIPPER 1 OS=Arabidopsis thaliana GN=ZPR1 PE=1 SV=1[more]
ZPR2_ARATH1.0e-0940.21Protein LITTLE ZIPPER 2 OS=Arabidopsis thaliana GN=ZPR2 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0L3S0_CUCSA3.9e-5394.83Uncharacterized protein OS=Cucumis sativus GN=Csa_3G125520 PE=4 SV=1[more]
A0A0D2SA08_GOSRA2.1e-1455.95Uncharacterized protein OS=Gossypium raimondii GN=B456_007G092100 PE=4 SV=1[more]
W9QSF5_9ROSA4.7e-1458.97Uncharacterized protein OS=Morus notabilis GN=L484_022450 PE=4 SV=1[more]
A0A0B2RB66_GLYSO1.4e-1358.44Uncharacterized protein OS=Glycine soja GN=glysoja_005163 PE=4 SV=1[more]
I1L6T7_SOYBN1.4e-1358.44Uncharacterized protein OS=Glycine max GN=GLYMA_09G268100 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G45450.11.9e-1147.83 protein binding[more]
AT3G60890.26.3e-1039.18 protein binding[more]
AT3G52770.11.9e-0654.55 protein binding[more]
Match NameE-valueIdentityDescription
gi|659075441|ref|XP_008438145.1|4.0e-59100.00PREDICTED: uncharacterized protein LOC103483340 [Cucumis melo][more]
gi|700201452|gb|KGN56585.1|5.6e-5394.83hypothetical protein Csa_3G125520 [Cucumis sativus][more]
gi|823186236|ref|XP_012489789.1|3.0e-1455.95PREDICTED: uncharacterized protein LOC105802609 [Gossypium raimondii][more]
gi|703085867|ref|XP_010092855.1|6.7e-1458.97hypothetical protein L484_022450 [Morus notabilis][more]
gi|356532085|ref|XP_003534604.1|2.0e-1358.44PREDICTED: protein LITTLE ZIPPER 2 [Glycine max][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU45799melon EST collection version 4.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006178T1MELO3C006178T1mRNA
MELO3C006178T2MELO3C006178T2mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU45799MU45799transcribed_cluster


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33601FAMILY NOT NAMEDcoord: 2..90
score: 8.5
NoneNo IPR availablePANTHERPTHR33601:SF1LITTLE ZIPPER 1 PROTEIN-RELATEDcoord: 2..90
score: 8.5

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
MELO3C006178MELO3C005596Melon (DHL92) v3.5.1memeB019