CmaCh15G011780 (gene) Cucurbita maxima (Rimu)

NameCmaCh15G011780
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_41
LocationCma_Chr15 : 7461716 .. 7462528 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATACTGTGTCCCGTGAGTCTACACACAGTCTATATAAGTATTGGCTTTAGTCCTACTGTTTCCCCTGCAACTTCCTTGCATTATTCAACTAGAAAGGAAGGGCAAAAGTTAAGAAGCTGCATAGAAGAATAATGTGCATCAGTGCAACGCAGAGTATTCTGTTCCATCAAATTCAGACTTCCAAGAACAGGAGACGATCAAAAAGATCCAAACTTCAAGTTCTAAGGCTTACCAGGTTGCTTTCTTACAGAACCCATTTCACTTCTTTTATGTTTTGGGGGCCTTTTGATTCATTTGAAAGTGATGGGGTTTTGTTTTTGTGTTTAGCAGGAGGAGATGTGAAGAGAAGCTGGGGAAAGACATTGAGCTGAAGAATCTGCAGCTATATATGAAGAATCAGACCATAATCAAAGAGAATGATAAGCTGAGAGAGAAAGCCAATATCCTTCATCAAGAGAACATAGCTTTAATGACTGAGTTTCAGAAAAAATTCCCACATTTGAATCAGAGAAAATGATGAGAATCATAAGAGCTTGACATGGTTGATTATCATCAGGGTTGCTAGTCTTGCTTGTTTCATTGCTTTAGTACCTTTACTTTCCATCAAAAAATGAAAAACAGTACTCCATATAACATAATTTTGTTCATCAATTTGGGCGATTCTCTACTTGGGGTAGATTTAAGAGTCTTAGCTAAACATGGTCGAAACAACCGAAGTCGTTTCGAGAAGAAAGAACTCAAGTTTAGTCCACAACATGATATCAACTGAGGAAGGTTCAGAAATATCCAGATCTACTATAGAAAACTATGG

mRNA sequence

TTATACTGTGTCCCGTGAGTCTACACACAGTCTATATAAGTATTGGCTTTAGTCCTACTGTTTCCCCTGCAACTTCCTTGCATTATTCAACTAGAAAGGAAGGGCAAAAGTTAAGAAGCTGCATAGAAGAATAATGTGCATCAGTGCAACGCAGAGTATTCTGTTCCATCAAATTCAGACTTCCAAGAACAGGAGACGATCAAAAAGATCCAAACTTCAAGTTCTAAGGCTTACCAGCAGGAGGAGATGTGAAGAGAAGCTGGGGAAAGACATTGAGCTGAAGAATCTGCAGCTATATATGAAGAATCAGACCATAATCAAAGAGAATGATAAGCTGAGAGAGAAAGCCAATATCCTTCATCAAGAGAACATAGCTTTAATGACTGAGTTTCAGAAAAAATTCCCACATTTGAATCAGAGAAAATGATGAGAATCATAAGAGCTTGACATGGTTGATTATCATCAGGGTTGCTAGTCTTGCTTGTTTCATTGCTTTAGTACCTTTACTTTCCATCAAAAAATGAAAAACAGTACTCCATATAACATAATTTTGTTCATCAATTTGGGCGATTCTCTACTTGGGGTAGATTTAAGAGTCTTAGCTAAACATGGTCGAAACAACCGAAGTCGTTTCGAGAAGAAAGAACTCAAGTTTAGTCCACAACATGATATCAACTGAGGAAGGTTCAGAAATATCCAGATCTACTATAGAAAACTATGG

Coding sequence (CDS)

ATGTGCATCAGTGCAACGCAGAGTATTCTGTTCCATCAAATTCAGACTTCCAAGAACAGGAGACGATCAAAAAGATCCAAACTTCAAGTTCTAAGGCTTACCAGCAGGAGGAGATGTGAAGAGAAGCTGGGGAAAGACATTGAGCTGAAGAATCTGCAGCTATATATGAAGAATCAGACCATAATCAAAGAGAATGATAAGCTGAGAGAGAAAGCCAATATCCTTCATCAAGAGAACATAGCTTTAATGACTGAGTTTCAGAAAAAATTCCCACATTTGAATCAGAGAAAATGA

Protein sequence

MCISATQSILFHQIQTSKNRRRSKRSKLQVLRLTSRRRCEEKLGKDIELKNLQLYMKNQTIIKENDKLREKANILHQENIALMTEFQKKFPHLNQRK
BLAST of CmaCh15G011780 vs. Swiss-Prot
Match: ZPR1_ARATH (Protein LITTLE ZIPPER 1 OS=Arabidopsis thaliana GN=ZPR1 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 7.3e-06
Identity = 35/89 (39.33%), Postives = 57/89 (64.04%), Query Frame = 1

Query: 1   MCISATQSILFHQIQTSKNRRRSKRSKLQVLRLTSRRRCEEKLGKDIELKNLQLYMKNQT 60
           MC+S++++  F    T        +S +++ RL+ RRR   +  K +E+ NL+LY++NQ 
Sbjct: 44  MCLSSSET--FSDTPTRLVLYLKTQSHVRIPRLSRRRRMWRE-EKKMEMINLKLYVENQN 103

Query: 61  IIKENDKLREKANILHQENIALMTEFQKK 90
           II+EN+KL++KA +LHQEN  L +  Q K
Sbjct: 104 IIRENEKLKKKALLLHQENKTLFSLLQTK 129

BLAST of CmaCh15G011780 vs. TrEMBL
Match: A0A0A0KKF8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G157390 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.1e-35
Identity = 82/97 (84.54%), Postives = 91/97 (93.81%), Query Frame = 1

Query: 1  MCISATQSILFHQIQTSKNRRRSKRSKLQVLRLTSRRRCEEKLGKDIELKNLQLYMKNQT 60
          MC+SATQS+LFH IQ+SKNRR SKRS  QVLRLT RRRCEEKLGKDIELKNLQLY++NQT
Sbjct: 1  MCVSATQSVLFHTIQSSKNRRSSKRSNFQVLRLT-RRRCEEKLGKDIELKNLQLYLENQT 60

Query: 61 IIKENDKLREKANILHQENIALMTEFQKKFPHLNQRK 98
          II+EN+KLREKANILHQEN+AL+TEFQKKFPHL QRK
Sbjct: 61 IIEENEKLREKANILHQENLALLTEFQKKFPHLEQRK 96

BLAST of CmaCh15G011780 vs. TrEMBL
Match: B9RBV5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1681400 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.6e-20
Identity = 54/95 (56.84%), Postives = 78/95 (82.11%), Query Frame = 1

Query: 1  MCISATQSILFHQIQTSKNRRRSKRSKLQVLRLTSRRRCEEKLGKDIELKNLQLYMKNQT 60
          MCI+  +         +K ++RSK+ K+QVL LT RRRC+E+ GKD+ELKNL+LY++NQ+
Sbjct: 1  MCINRIEKFPPPPFYPAKKKQRSKKPKVQVLGLT-RRRCQEEEGKDMELKNLKLYLENQS 60

Query: 61 IIKENDKLREKANILHQENIALMTEFQKKFPHLNQ 96
          I++EN+KLR+KAN+LHQEN+AL++EFQKKFPH+ +
Sbjct: 61 IVEENEKLRKKANLLHQENLALISEFQKKFPHVER 94

BLAST of CmaCh15G011780 vs. TrEMBL
Match: A0A061GBU8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_016107 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.1e-19
Identity = 52/80 (65.00%), Postives = 72/80 (90.00%), Query Frame = 1

Query: 16  TSKNRRRSKRSKLQVLRLTSRRRCEEKLGKDIELKNLQLYMKNQTIIKENDKLREKANIL 75
           +SK R RSK+SK+Q+ RL SR+RCEE + KD+E  NL+LY++NQ+II+EN+KLR+KAN+L
Sbjct: 88  SSKRRHRSKQSKVQIYRL-SRKRCEENVEKDMERLNLKLYLENQSIIEENEKLRKKANLL 147

Query: 76  HQENIALMTEFQKKFPHLNQ 96
           HQEN+ALM++FQKKFPHL++
Sbjct: 148 HQENLALMSDFQKKFPHLDR 166

BLAST of CmaCh15G011780 vs. TrEMBL
Match: D7TWD1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g05030 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 6.9e-19
Identity = 54/95 (56.84%), Postives = 74/95 (77.89%), Query Frame = 1

Query: 1  MCISATQSILFHQIQTSKNRRRSKRSKLQVLRLTSRRRCEEKLGKDIELKNLQLYMKNQT 60
          MC+S  + I         +R R+KRSK+QV RLT RRRCE ++ KD+ELKNL+LY++N+ 
Sbjct: 1  MCMSTAEWI--------PSRPRTKRSKVQVHRLTRRRRCEVQVEKDMELKNLKLYLENRN 60

Query: 61 IIKENDKLREKANILHQENIALMTEFQKKFPHLNQ 96
          I++EN+KLR+KA +LHQEN+ALM+EFQ KFPH N+
Sbjct: 61 IMEENEKLRKKATLLHQENLALMSEFQTKFPHFNR 87

BLAST of CmaCh15G011780 vs. TrEMBL
Match: A0A0D2QUS4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G167900 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.2e-17
Identity = 54/96 (56.25%), Postives = 77/96 (80.21%), Query Frame = 1

Query: 1  MCISATQSILFHQIQTSKNRRRSKRSKLQVLRLTSRRRCEEK-LGKDIELKNLQLYMKNQ 60
          MC + T S     + +SK R RSK+SK+Q+ RL SR+RCEE+ + KD+EL NL+LY++N+
Sbjct: 1  MCNNMTWSPSHPILVSSKRRHRSKQSKVQIYRL-SRKRCEEEDVKKDMELMNLKLYLENR 60

Query: 61 TIIKENDKLREKANILHQENIALMTEFQKKFPHLNQ 96
          +II+EN+KLRE+AN+LHQEN+ALM+E Q K PHL++
Sbjct: 61 SIIEENEKLRERANLLHQENLALMSELQNKVPHLDR 95

BLAST of CmaCh15G011780 vs. TAIR10
Match: AT3G60890.2 (AT3G60890.2 protein binding)

HSP 1 Score: 55.1 bits (131), Expect = 2.8e-08
Identity = 32/72 (44.44%), Postives = 53/72 (73.61%), Query Frame = 1

Query: 20 RRRSK-RSKLQVLRLTSRRRCEEKLGKDIELKNLQLYMKNQTIIKENDKLREKANILHQE 79
          + +SK ++ L++L LTSRRR   K  K++E++NL+L+++NQ+II+EN+ L++KA +LH E
Sbjct: 26 KHKSKTQTHLRILNLTSRRRRLLKEQKEMEMRNLKLFVENQSIIRENEALKKKALLLHHE 85

Query: 80 NIALMTEFQKKF 91
          N AL      K+
Sbjct: 86 NNALFALLHPKY 97

BLAST of CmaCh15G011780 vs. TAIR10
Match: AT2G45450.1 (AT2G45450.1 protein binding)

HSP 1 Score: 51.2 bits (121), Expect = 4.1e-07
Identity = 35/89 (39.33%), Postives = 57/89 (64.04%), Query Frame = 1

Query: 1   MCISATQSILFHQIQTSKNRRRSKRSKLQVLRLTSRRRCEEKLGKDIELKNLQLYMKNQT 60
           MC+S++++  F    T        +S +++ RL+ RRR   +  K +E+ NL+LY++NQ 
Sbjct: 44  MCLSSSET--FSDTPTRLVLYLKTQSHVRIPRLSRRRRMWRE-EKKMEMINLKLYVENQN 103

Query: 61  IIKENDKLREKANILHQENIALMTEFQKK 90
           II+EN+KL++KA +LHQEN  L +  Q K
Sbjct: 104 IIRENEKLKKKALLLHQENKTLFSLLQTK 129

BLAST of CmaCh15G011780 vs. NCBI nr
Match: gi|700195003|gb|KGN50180.1| (hypothetical protein Csa_5G157390 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 1.5e-35
Identity = 82/97 (84.54%), Postives = 91/97 (93.81%), Query Frame = 1

Query: 1  MCISATQSILFHQIQTSKNRRRSKRSKLQVLRLTSRRRCEEKLGKDIELKNLQLYMKNQT 60
          MC+SATQS+LFH IQ+SKNRR SKRS  QVLRLT RRRCEEKLGKDIELKNLQLY++NQT
Sbjct: 1  MCVSATQSVLFHTIQSSKNRRSSKRSNFQVLRLT-RRRCEEKLGKDIELKNLQLYLENQT 60

Query: 61 IIKENDKLREKANILHQENIALMTEFQKKFPHLNQRK 98
          II+EN+KLREKANILHQEN+AL+TEFQKKFPHL QRK
Sbjct: 61 IIEENEKLREKANILHQENLALLTEFQKKFPHLEQRK 96

BLAST of CmaCh15G011780 vs. NCBI nr
Match: gi|659074649|ref|XP_008437719.1| (PREDICTED: uncharacterized protein LOC103483063 [Cucumis melo])

HSP 1 Score: 156.4 bits (394), Expect = 2.6e-35
Identity = 81/97 (83.51%), Postives = 92/97 (94.85%), Query Frame = 1

Query: 1  MCISATQSILFHQIQTSKNRRRSKRSKLQVLRLTSRRRCEEKLGKDIELKNLQLYMKNQT 60
          MC+SATQS+LFH IQ+SKN+R SKRSK QVLRLT RRRCEEKLGK+IELKNLQLY++NQT
Sbjct: 1  MCVSATQSVLFHTIQSSKNKRSSKRSKFQVLRLT-RRRCEEKLGKEIELKNLQLYLENQT 60

Query: 61 IIKENDKLREKANILHQENIALMTEFQKKFPHLNQRK 98
          II+EN+KLREKANILHQEN+AL+TEFQKKFPHL QRK
Sbjct: 61 IIEENEKLREKANILHQENLALLTEFQKKFPHLEQRK 96

BLAST of CmaCh15G011780 vs. NCBI nr
Match: gi|1000983493|ref|XP_015584519.1| (PREDICTED: protein LITTLE ZIPPER 2 isoform X1 [Ricinus communis])

HSP 1 Score: 111.7 bits (278), Expect = 7.3e-22
Identity = 55/95 (57.89%), Postives = 79/95 (83.16%), Query Frame = 1

Query: 1  MCISATQSILFHQIQTSKNRRRSKRSKLQVLRLTSRRRCEEKLGKDIELKNLQLYMKNQT 60
          MCI+  +         +K ++RSK+ K+QVL LTSRRRC+E+ GKD+ELKNL+LY++NQ+
Sbjct: 1  MCINRIEKFPPPPFYPAKKKQRSKKPKVQVLGLTSRRRCQEEEGKDMELKNLKLYLENQS 60

Query: 61 IIKENDKLREKANILHQENIALMTEFQKKFPHLNQ 96
          I++EN+KLR+KAN+LHQEN+AL++EFQKKFPH+ +
Sbjct: 61 IVEENEKLRKKANLLHQENLALISEFQKKFPHVER 95

BLAST of CmaCh15G011780 vs. NCBI nr
Match: gi|255537145|ref|XP_002509639.1| (PREDICTED: protein LITTLE ZIPPER 2 isoform X2 [Ricinus communis])

HSP 1 Score: 105.5 bits (262), Expect = 5.2e-20
Identity = 54/95 (56.84%), Postives = 78/95 (82.11%), Query Frame = 1

Query: 1  MCISATQSILFHQIQTSKNRRRSKRSKLQVLRLTSRRRCEEKLGKDIELKNLQLYMKNQT 60
          MCI+  +         +K ++RSK+ K+QVL LT RRRC+E+ GKD+ELKNL+LY++NQ+
Sbjct: 1  MCINRIEKFPPPPFYPAKKKQRSKKPKVQVLGLT-RRRCQEEEGKDMELKNLKLYLENQS 60

Query: 61 IIKENDKLREKANILHQENIALMTEFQKKFPHLNQ 96
          I++EN+KLR+KAN+LHQEN+AL++EFQKKFPH+ +
Sbjct: 61 IVEENEKLRKKANLLHQENLALISEFQKKFPHVER 94

BLAST of CmaCh15G011780 vs. NCBI nr
Match: gi|590677466|ref|XP_007040023.1| (Uncharacterized protein TCM_016107 [Theobroma cacao])

HSP 1 Score: 102.4 bits (254), Expect = 4.4e-19
Identity = 52/80 (65.00%), Postives = 72/80 (90.00%), Query Frame = 1

Query: 16  TSKNRRRSKRSKLQVLRLTSRRRCEEKLGKDIELKNLQLYMKNQTIIKENDKLREKANIL 75
           +SK R RSK+SK+Q+ RL SR+RCEE + KD+E  NL+LY++NQ+II+EN+KLR+KAN+L
Sbjct: 88  SSKRRHRSKQSKVQIYRL-SRKRCEENVEKDMERLNLKLYLENQSIIEENEKLRKKANLL 147

Query: 76  HQENIALMTEFQKKFPHLNQ 96
           HQEN+ALM++FQKKFPHL++
Sbjct: 148 HQENLALMSDFQKKFPHLDR 166

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ZPR1_ARATH7.3e-0639.33Protein LITTLE ZIPPER 1 OS=Arabidopsis thaliana GN=ZPR1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KKF8_CUCSA1.1e-3584.54Uncharacterized protein OS=Cucumis sativus GN=Csa_5G157390 PE=4 SV=1[more]
B9RBV5_RICCO3.6e-2056.84Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1681400 PE=4 SV=1[more]
A0A061GBU8_THECC3.1e-1965.00Uncharacterized protein OS=Theobroma cacao GN=TCM_016107 PE=4 SV=1[more]
D7TWD1_VITVI6.9e-1956.84Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g05030 PE=4 SV=... [more]
A0A0D2QUS4_GOSRA2.2e-1756.25Uncharacterized protein OS=Gossypium raimondii GN=B456_003G167900 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G60890.22.8e-0844.44 protein binding[more]
AT2G45450.14.1e-0739.33 protein binding[more]
Match NameE-valueIdentityDescription
gi|700195003|gb|KGN50180.1|1.5e-3584.54hypothetical protein Csa_5G157390 [Cucumis sativus][more]
gi|659074649|ref|XP_008437719.1|2.6e-3583.51PREDICTED: uncharacterized protein LOC103483063 [Cucumis melo][more]
gi|1000983493|ref|XP_015584519.1|7.3e-2257.89PREDICTED: protein LITTLE ZIPPER 2 isoform X1 [Ricinus communis][more]
gi|255537145|ref|XP_002509639.1|5.2e-2056.84PREDICTED: protein LITTLE ZIPPER 2 isoform X2 [Ricinus communis][more]
gi|590677466|ref|XP_007040023.1|4.4e-1965.00Uncharacterized protein TCM_016107 [Theobroma cacao][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh15G011780.1CmaCh15G011780.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 58..78
scor
NoneNo IPR availablePANTHERPTHR33601FAMILY NOT NAMEDcoord: 2..94
score: 1.7
NoneNo IPR availablePANTHERPTHR33601:SF2SUBFAMILY NOT NAMEDcoord: 2..94
score: 1.7

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh15G011780CmaCh02G015160Cucurbita maxima (Rimu)cmacmaB311
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh15G011780Cucumber (Chinese Long) v3cmacucB0331
CmaCh15G011780Cucumber (Chinese Long) v3cmacucB0332
CmaCh15G011780Cucumber (Chinese Long) v3cmacucB0336
CmaCh15G011780Watermelon (97103) v2cmawmbB290
CmaCh15G011780Watermelon (97103) v2cmawmbB304
CmaCh15G011780Watermelon (97103) v2cmawmbB313
CmaCh15G011780Cucurbita maxima (Rimu)cmacmaB301
CmaCh15G011780Cucurbita maxima (Rimu)cmacmaB312
CmaCh15G011780Cucurbita maxima (Rimu)cmacmaB334
CmaCh15G011780Cucumber (Gy14) v1cgycmaB0710
CmaCh15G011780Cucumber (Gy14) v1cgycmaB0886
CmaCh15G011780Cucumber (Gy14) v1cgycmaB0994
CmaCh15G011780Watermelon (Charleston Gray)cmawcgB264
CmaCh15G011780Cucurbita moschata (Rifu)cmacmoB287
CmaCh15G011780Cucurbita moschata (Rifu)cmacmoB298
CmaCh15G011780Cucurbita moschata (Rifu)cmacmoB316
CmaCh15G011780Wild cucumber (PI 183967)cmacpiB285
CmaCh15G011780Wild cucumber (PI 183967)cmacpiB286
CmaCh15G011780Wild cucumber (PI 183967)cmacpiB292
CmaCh15G011780Cucumber (Chinese Long) v2cmacuB281
CmaCh15G011780Cucumber (Chinese Long) v2cmacuB283
CmaCh15G011780Melon (DHL92) v3.5.1cmameB278
CmaCh15G011780Melon (DHL92) v3.5.1cmameB279
CmaCh15G011780Watermelon (Charleston Gray)cmawcgB246
CmaCh15G011780Watermelon (97103) v1cmawmB266
CmaCh15G011780Watermelon (97103) v1cmawmB254
CmaCh15G011780Cucurbita pepo (Zucchini)cmacpeB329
CmaCh15G011780Cucurbita pepo (Zucchini)cmacpeB336
CmaCh15G011780Bottle gourd (USVL1VR-Ls)cmalsiB288
CmaCh15G011780Bottle gourd (USVL1VR-Ls)cmalsiB291
CmaCh15G011780Cucumber (Gy14) v2cgybcmaB324
CmaCh15G011780Cucumber (Gy14) v2cgybcmaB325
CmaCh15G011780Cucumber (Gy14) v2cgybcmaB330
CmaCh15G011780Melon (DHL92) v3.6.1cmamedB320
CmaCh15G011780Melon (DHL92) v3.6.1cmamedB319
CmaCh15G011780Silver-seed gourdcarcmaB1200
CmaCh15G011780Silver-seed gourdcarcmaB1261