Carg14222 (gene) Silver-seed gourd

NameCarg14222
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionDolichol-phosphate mannosyltransferase subunit 3
LocationCucurbita_argyrosperma_scaffold_045 : 660901 .. 663215 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCATCTCTCCCTAAATTTTGCCCTTTCTCACGCTAAGCTCCCCTTTCTCTCTAACCTTCTTCCAGTCGCTTACTGGTTGCCGGCCGACGATCTTCACTCGATCTGTTCTTTGGGTAAGTTTTCCTCCTTTATTAATCTCTTATTCTTTCACTTGATTTTCGTGTTTGACTGAAATACGTGTAGATCATAAAGAAAATAATCATGAAATAAGGAATGGGTGATTGGTGGTTTGGTGCTACCACGCACGTCGAGTGTTATTTTCATTTAAAATGCTCATTTGGTTTACGTTTCTTTTTAGTTTAACAATTCGCCGAACTGTCAAATGATGTTGGGAATTTGCGCAAGGGCTTTGAGTTCATATAAATGTTACTGTGAGCTGTGAAATAATCTTTTATAAAATCCCCTCTGATGACAGTGGAAGCATATTTTGAAATATGCGTCGACCAGCAAGAAAATTATCATGAAATAAGGTATAGTTGATTGGTGTTTGGTGTTACCAGGCATCAAAACTCTCAATGTGCTTACTCTTTTTTGGTTAATAATTCACGGAACTGCCAAATGATGTTGGGAAATTGCGCAAGGGCTTTGAGTTCATGTAACGTATTACTCTGAGCAGTGAAATAATCTTTTATGAAATCCCCTCTGATGGCAGTAGAAGTTGTTTTGAAATTTAATATGTTCTGTACTAGTTGATTTTGTCTTTAAGTGTGTCTTTGAGTTCAAGCCACATGATTGCTTCATTTTTGTGGTAAACTATCGATTATACAATGGAGATGAGGGCGCGAGGTTTGAATATGAGTATCACTTTGACATAAAAGACATCAGAGCTACCATGCATGTCTTTTTCTTTGATGAAGTATCTAACATTATGTTGCTTTATGTTTTTACTGCCATATAACTTATGCCAACTTGTTTTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAAAGAAAAAAAAGAAGGCTACAAGCTTCCGATAAGCTCATTTGATCATAACATTCTTATATACCATATTAGGGACTAATTGCGTGTCTCGTGTTTGAATTGTGTTTTATAATGATTTAGCCTTATGAATCACAACTTAAGTTGTGGAGACATATTTAGCCATATAGAGTGCATGTATGAAAGTTGGCTGCTCAGTGTCTGATCCAGTTAGTTAATAATAACGTCTATTTTGGGAGATGTAATTGGTTCATTACTTGTTTGAGTTTTAGATTTTGGCATTACTTTTCTCACCACCAATCAATGAAGCATATAGTCAAGATTTTGACATTATTGATGGCCATATCAGCGTTGTGGATTGGCCTCTTGCAAACATCTATATTACCACATGGCCATGCATGGCTGGTGAGTTAACAGTCATTATGCTCTCAAATCCTTCATATTTATTGTCATCATTTTACTCTCGATAGGATGCTTACTGTACATGTCTTATCACACCAGCTACCCATCTATTTTATTGTCTCTCTGGGATGCTATGGTCTATTGATGGTTGGTGTCGGTCTAATGACATTTCCAACTTGTCCTAGAGAAGGACTGTTGCTACAACAGGTATTTCCCCCTCTTATTCTCACTTTGCACTTTTATATCATACTAGAGTAACTTAGTGAATAAGGCACCAATTACCATCTCAATGGTTCAATCCCGCACCCTGCATTGTTGAACTAAATAAGAAGGCTCTCTCTCTTTCTCTGGAATTTTCTTCGAATTTCCATATCTATCAGACTGGAAGATACGTACAAACATCTCAGCCTGAGTTCCTTTTGTGTAGGACATTGATGAAGCCAAAGAACACCTTAAGCAAAAAGGGATTGACATAAATTCTAATTGACAGACTTCACCATCCTCTGCCTTCTCTCCTGTTGATCAGATCTCTATTTGTTTGATCAGGGCGAAGAACACTAAACCCATTTCAAAGCGCATTTTTTTATTGGATTCTTTAAGAAAGGTAATGATTGTGGATTCATGTATAGAACGAAGTTGTTTCTTTGATAATTTTGTCAGTTGGTAACATAATCTTTCAGTTTTTGACAGAGCTAGCAACTCTCTCTCTTATATATGTTTCCATTTCTTTATACTACAATGTATATTCAGATGACTTTGTGATTGATGTTAATGACCTCAAGTTTGATTGTTTTGAGCTCCCTCCCTCTTTAGCACTTTTGTATGGTCTACAGGAGAACACGTTTGGATGGAGTAAAGACGGGTGGACAAAACATTCAATCTAAAAAATGTGTTCTCTTTTCTCATGTTGTAGTTTTTTAATTTTTTATTTATATAGTTTATCTAATAGTTTGACGCCT

mRNA sequence

TTTCATCTCTCCCTAAATTTTGCCCTTTCTCACGCTAAGCTCCCCTTTCTCTCTAACCTTCTTCCAGTCGCTTACTGGTTGCCGGCCGACGATCTTCACTCGATCTGTTCTTTGGATTTTGGCATTACTTTTCTCACCACCAATCAATGAAGCATATAGTCAAGATTTTGACATTATTGATGGCCATATCAGCGTTGTGGATTGGCCTCTTGCAAACATCTATATTACCACATGGCCATGCATGGCTGCTACCCATCTATTTTATTGTCTCTCTGGGATGCTATGGTCTATTGATGGTTGGTGTCGGTCTAATGACATTTCCAACTTGTCCTAGAGAAGGACTGTTGCTACAACAGACTTCACCATCCTCTGCCTTCTCTCCTGTTGATCAGATCTCTATTTGTTTGATCAGGGCGAAGAACACTAAACCCATTTCAAAGCGCATTTTTTTATTGGATTCTTTAAGAAAGTTTTTGACAGAGCTAGCAACTCTCTCTCTTATATATGTTTCCATTTCTTTATACTACAATGTATATTCAGATGACTTTGTGATTGATGTTAATGACCTCAAGTTTGATTGTTTTGAGCTCCCTCCCTCTTTAGCACTTTTGTATGGTCTACAGGAGAACACGTTTGGATGGAGTAAAGACGGTTTATCTAATAGTTTGACGCCT

Coding sequence (CDS)

ATGAAGCATATAGTCAAGATTTTGACATTATTGATGGCCATATCAGCGTTGTGGATTGGCCTCTTGCAAACATCTATATTACCACATGGCCATGCATGGCTGCTACCCATCTATTTTATTGTCTCTCTGGGATGCTATGGTCTATTGATGGTTGGTGTCGGTCTAATGACATTTCCAACTTGTCCTAGAGAAGGACTGTTGCTACAACAGACTTCACCATCCTCTGCCTTCTCTCCTGTTGATCAGATCTCTATTTGTTTGATCAGGGCGAAGAACACTAAACCCATTTCAAAGCGCATTTTTTTATTGGATTCTTTAAGAAAGTTTTTGACAGAGCTAGCAACTCTCTCTCTTATATATGTTTCCATTTCTTTATACTACAATGTATATTCAGATGACTTTGTGATTGATGTTAATGACCTCAAGTTTGATTGTTTTGAGCTCCCTCCCTCTTTAGCACTTTTGTATGGTCTACAGGAGAACACGTTTGGATGGAGTAAAGACGGTTTATCTAATAGTTTGACGCCT

Protein sequence

MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPTCPREGLLLQQTSPSSAFSPVDQISICLIRAKNTKPISKRIFLLDSLRKFLTELATLSLIYVSISLYYNVYSDDFVIDVNDLKFDCFELPPSLALLYGLQENTFGWSKDGLSNSLTP
BLAST of Carg14222 vs. NCBI nr
Match: XP_022941634.1 (dolichol-phosphate mannose synthase subunit 3-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 140.2 bits (352), Expect = 6.7e-30
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 1   MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 60
           MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT
Sbjct: 32  MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 91

Query: 61  CPREGLLLQQ 71
           CPREGLLLQQ
Sbjct: 92  CPREGLLLQQ 101

BLAST of Carg14222 vs. NCBI nr
Match: XP_022941635.1 (dolichol-phosphate mannose synthase subunit 3-like isoform X2 [Cucurbita moschata] >XP_023531536.1 dolichol-phosphate mannose synthase subunit 3-like [Cucurbita pepo subsp. pepo] >XP_023531544.1 dolichol-phosphate mannose synthase subunit 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 140.2 bits (352), Expect = 6.7e-30
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 1  MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 60
          MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT
Sbjct: 1  MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 60

Query: 61 CPREGLLLQQ 71
          CPREGLLLQQ
Sbjct: 61 CPREGLLLQQ 70

BLAST of Carg14222 vs. NCBI nr
Match: XP_022992110.1 (dolichol-phosphate mannose synthase subunit 3-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 139.0 bits (349), Expect = 1.5e-29
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 1   MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 60
           MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT
Sbjct: 32  MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 91

Query: 61  CPREGLLLQQ 71
           CPREG+LLQQ
Sbjct: 92  CPREGVLLQQ 101

BLAST of Carg14222 vs. NCBI nr
Match: XP_022992118.1 (dolichol-phosphate mannose synthase subunit 3-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 139.0 bits (349), Expect = 1.5e-29
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 0

Query: 1  MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 60
          MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT
Sbjct: 1  MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 60

Query: 61 CPREGLLLQQ 71
          CPREG+LLQQ
Sbjct: 61 CPREGVLLQQ 70

BLAST of Carg14222 vs. NCBI nr
Match: XP_022929185.1 (dolichol-phosphate mannose synthase subunit 3-like [Cucurbita moschata] >XP_022929186.1 dolichol-phosphate mannose synthase subunit 3-like [Cucurbita moschata] >XP_022929187.1 dolichol-phosphate mannose synthase subunit 3-like [Cucurbita moschata] >XP_022929188.1 dolichol-phosphate mannose synthase subunit 3-like [Cucurbita moschata])

HSP 1 Score: 135.2 bits (339), Expect = 2.2e-28
Identity = 65/70 (92.86%), Postives = 69/70 (98.57%), Query Frame = 0

Query: 1  MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 60
          MKHIVKILTLL+A+SALWIGLLQ SI+PHGHAWLLPIYFIVSLGCYGLLMVG+GLMTFPT
Sbjct: 1  MKHIVKILTLLVAVSALWIGLLQASIIPHGHAWLLPIYFIVSLGCYGLLMVGIGLMTFPT 60

Query: 61 CPREGLLLQQ 71
          CPREGLLLQQ
Sbjct: 61 CPREGLLLQQ 70

BLAST of Carg14222 vs. TAIR10
Match: AT1G48140.1 (dolichol-phosphate mannosyltransferase-related)

HSP 1 Score: 115.5 bits (288), Expect = 3.2e-26
Identity = 55/70 (78.57%), Postives = 63/70 (90.00%), Query Frame = 0

Query: 1  MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 60
          MKHIVKIL+LL+AISA WIGLLQ +I+P  H WLLPIYF+VSLGCYGLLMVGVGLM FPT
Sbjct: 1  MKHIVKILSLLVAISAFWIGLLQAAIIPRSHTWLLPIYFVVSLGCYGLLMVGVGLMQFPT 60

Query: 61 CPREGLLLQQ 71
          CP+E +LLQ+
Sbjct: 61 CPQEAVLLQK 70

BLAST of Carg14222 vs. Swiss-Prot
Match: sp|Q8LEQ4|DPM3_ARATH (Dolichol-phosphate mannose synthase subunit 3 OS=Arabidopsis thaliana OX=3702 GN=DPMS3 PE=1 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.8e-25
Identity = 55/70 (78.57%), Postives = 63/70 (90.00%), Query Frame = 0

Query: 1  MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 60
          MKHIVKIL+LL+AISA WIGLLQ +I+P  H WLLPIYF+VSLGCYGLLMVGVGLM FPT
Sbjct: 1  MKHIVKILSLLVAISAFWIGLLQAAIIPRSHTWLLPIYFVVSLGCYGLLMVGVGLMQFPT 60

Query: 61 CPREGLLLQQ 71
          CP+E +LLQ+
Sbjct: 61 CPQEAVLLQK 70

BLAST of Carg14222 vs. TrEMBL
Match: tr|A0A1S3CN50|A0A1S3CN50_CUCME (uncharacterized protein LOC103502803 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103502803 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 5.4e-28
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = 0

Query: 1  MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 60
          MKHIVKILTLL+AISALWIGLLQTSILPHGH WLLPIYFIVSLGCYGLLMVGVGLMTFPT
Sbjct: 1  MKHIVKILTLLVAISALWIGLLQTSILPHGHTWLLPIYFIVSLGCYGLLMVGVGLMTFPT 60

Query: 61 CPREGLLLQQ 71
          CP EGLLLQ+
Sbjct: 61 CPAEGLLLQK 70

BLAST of Carg14222 vs. TrEMBL
Match: tr|A0A1S3CN63|A0A1S3CN63_CUCME (dolichol-phosphate mannosyltransferase subunit 3 isoform X6 OS=Cucumis melo OX=3656 GN=LOC103502803 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 5.4e-28
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = 0

Query: 1  MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 60
          MKHIVKILTLL+AISALWIGLLQTSILPHGH WLLPIYFIVSLGCYGLLMVGVGLMTFPT
Sbjct: 1  MKHIVKILTLLVAISALWIGLLQTSILPHGHTWLLPIYFIVSLGCYGLLMVGVGLMTFPT 60

Query: 61 CPREGLLLQQ 71
          CP EGLLLQ+
Sbjct: 61 CPAEGLLLQK 70

BLAST of Carg14222 vs. TrEMBL
Match: tr|A0A251N0F5|A0A251N0F5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G199000 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 5.6e-25
Identity = 60/70 (85.71%), Postives = 65/70 (92.86%), Query Frame = 0

Query: 1  MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 60
          MKHIVKI+TLL+AISALWIGLLQTSI+P  H WLLPIYFIVSLGCYGLLMVGVGLM FPT
Sbjct: 1  MKHIVKIMTLLVAISALWIGLLQTSIIPRSHTWLLPIYFIVSLGCYGLLMVGVGLMQFPT 60

Query: 61 CPREGLLLQQ 71
          CP+E +LLQQ
Sbjct: 61 CPQEAILLQQ 70

BLAST of Carg14222 vs. TrEMBL
Match: tr|M5VL02|M5VL02_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa013743mg PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 5.6e-25
Identity = 60/70 (85.71%), Postives = 65/70 (92.86%), Query Frame = 0

Query: 1  MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 60
          MKHIVKI+TLL+AISALWIGLLQTSI+P  H WLLPIYFIVSLGCYGLLMVGVGLM FPT
Sbjct: 17 MKHIVKIMTLLVAISALWIGLLQTSIIPRSHTWLLPIYFIVSLGCYGLLMVGVGLMQFPT 76

Query: 61 CPREGLLLQQ 71
          CP+E +LLQQ
Sbjct: 77 CPQEAILLQQ 86

BLAST of Carg14222 vs. TrEMBL
Match: tr|V4T945|V4T945_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10023078mg PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 9.6e-25
Identity = 59/77 (76.62%), Postives = 66/77 (85.71%), Query Frame = 0

Query: 1  MKHIVKILTLLMAISALWIGLLQTSILPHGHAWLLPIYFIVSLGCYGLLMVGVGLMTFPT 60
          MKH+VKILTLL+AI+ALW GLLQTS++P  H WLLPIYFIVSLGCYGLLMVG+GLM FPT
Sbjct: 1  MKHVVKILTLLVAITALWFGLLQTSVIPRSHTWLLPIYFIVSLGCYGLLMVGIGLMYFPT 60

Query: 61 CPREGLLLQQTSPSSAF 78
          CP+E LLLQQ    S F
Sbjct: 61 CPQEALLLQQDLKHSQF 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022941634.16.7e-30100.00dolichol-phosphate mannose synthase subunit 3-like isoform X1 [Cucurbita moschat... [more]
XP_022941635.16.7e-30100.00dolichol-phosphate mannose synthase subunit 3-like isoform X2 [Cucurbita moschat... [more]
XP_022992110.11.5e-2998.57dolichol-phosphate mannose synthase subunit 3-like isoform X1 [Cucurbita maxima][more]
XP_022992118.11.5e-2998.57dolichol-phosphate mannose synthase subunit 3-like isoform X2 [Cucurbita maxima][more]
XP_022929185.12.2e-2892.86dolichol-phosphate mannose synthase subunit 3-like [Cucurbita moschata] >XP_0229... [more]
Match NameE-valueIdentityDescription
AT1G48140.13.2e-2678.57dolichol-phosphate mannosyltransferase-related[more]
Match NameE-valueIdentityDescription
sp|Q8LEQ4|DPM3_ARATH5.8e-2578.57Dolichol-phosphate mannose synthase subunit 3 OS=Arabidopsis thaliana OX=3702 GN... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3CN50|A0A1S3CN50_CUCME5.4e-2894.29uncharacterized protein LOC103502803 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S3CN63|A0A1S3CN63_CUCME5.4e-2894.29dolichol-phosphate mannosyltransferase subunit 3 isoform X6 OS=Cucumis melo OX=3... [more]
tr|A0A251N0F5|A0A251N0F5_PRUPE5.6e-2585.71Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G199000 PE=4 SV=1[more]
tr|M5VL02|M5VL02_PRUPE5.6e-2585.71Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa013743mg PE=4 SV=1[more]
tr|V4T945|V4T945_9ROSI9.6e-2576.62Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10023078mg PE=4 ... [more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006486protein glycosylation
Vocabulary: INTERPRO
TermDefinition
IPR013174DPM3
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006486 protein glycosylation
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg14222-RACarg14222-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013174Dolichol-phosphate mannosyltransferase subunit 3PFAMPF08285DPM3coord: 1..70
e-value: 3.9E-13
score: 49.3
IPR013174Dolichol-phosphate mannosyltransferase subunit 3PANTHERPTHR16433FAMILY NOT NAMEDcoord: 1..71

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg14222Carg05821Silver-seed gourdcarcarB646