Carg12732 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12732
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Cornichon family protein
Location	Cucurbita_argyrosperma_scaffold_021 : 1047761 .. 1051191 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCTAAAGAGGAAATTGTGAGTGAAATTGATGAAACTTGGAAATGTGGTTGAAACTGGAAGCAATCATGATGGAACTACTGAAGCTTCATCGCAGTATGTAGCTTTAGACTCTATAGAGTTCAAACTCTCAAGAACACTGAACTAGCGAGATCGCCTTACCATCAACAATCAAGCTTTGAGTTCTGGAATTTCTGAACTGACGCTGCGCGGTTGTAGAAATGGCGTGGAGTCTGATCTTTTGGTTCGTCTCTTTCTGTATCAACATCGCACTTCTCGTCCTCAACTTTTACCAGGTACACCCTTTCTAATCTCTCATAAACCCTAGTTTTCGCGATCAAGTTACAGATTCTTTTGCGAGAAAGTTTGAATGCGTCTACTGAAACGTAGCCCTAATGTTGTTGTTGTGTTTGTCTTGTTGTAATCTTGTTGTTGCTTATTCAGTAAGCAGTGGAGGTCTGATGCATATCTCAGATTCAGATTCGGTTTTCTTGAAGAGAGAATTTCGACTTCAATTTTATTTACGTTTATATGTGACCTAGACCTAGATTTTGATTGATGGAACCTTTACACTTTCGTTGCGCCTACTTTTGAAATAGATTCAATACCTACTTACTGTTCCACCGCTCTCTTAGTTTCATAATTTTACGGTGATGAGTTTGATATCTTGATCAATCGTGCACTGGTAGCCGAAGTGAACGTATTCACAAAATGACATATCTACCTGTGAAATAACCGGCCCCTTCCATGGAATGGATTGATCATTTCCTTTTGCATCTGAGTCAACGATGTACTCTTACCTTGTTTTGTAGTCTCCAGAGAAGTGGCTGTATATGTAACTTGTTGGGATAAAAGATTGTAAATGTATTTCAACCATGAAACGGGCTTCAATTATTATAGTTGATTATACTCTAATAACTGGTTCTTGATGCGAATGGAAGTAAAAGTGATCCCAATTCCTGCGGGTTATGTCTGGGACATCAATAGATTGTTGGCTTTACTCCCATTTCGTTTAATATGATGTACAGTGGCAGGAGGAGAGAATTTATTGCTCTTATTTTCATTTGAACCATGACGATTTGTCCTCTCTATTGCTTGTATTCTTATAGACTTGATGAATGTTTAGATTTTACACTTGTAGATGAACATCACTAGCCATTGCAAAGAGTAATATTTATTGTCTAGTTACATCTGTGCTTTTAAGTTGGAAGCATCTAATGGTTGTGGTTGATCTTTTTTTGTAGCTCTTGGTATTAACGGATTTGGAGGCAGATTATTTGAACATCTATGATTCATCATCTCGCATTAACAAACTTGTTGTTCCAGAGTTTTTGGTGCAAGGACTGTTTTGCTCTCTTTTCCTCTTCACAGGCCACTGGTTCATGTTTCTTATAACCGTCCCTGTTAGCTGTTATCACATAAATTTGTAAGTGTTTCTTGACTCTGAAATAAGGCCTGGTATATATTTTCTTTTACTGTGTGCTATGGATGAGACCTATTGGTGGCGTTCTTTGTTGATTTTCCCCTTCTACTGTCTGGAAGTGTTATGTATGAGGCTTATGATGTCCCTTACTTGTAAAATGAATCTAGCTTGCACTCATATTATATATACTTTATTCTTTTGTTATGGAAAAAAGCATTATGCATTCTTTTTACTTTCTTAATACGCTTTGTTCTATTATCAAACACCATTCTTTTAGATGAATGTATATAGTGAAAACTTCTTGGTACGGTTAGAAACATCGAAGATTCTCACTCTGAATGTATATAGTGAAAACTTCTTGGACGATGTTAATGGTAAACCGATTAACCTGGTGCCAATTATTGCTTTCGTCATTTTTTCTGAACATTCTTATTCCATGTAGCTATCCCAGTACAAGACTCAAATTTAATTCCATTACACAGGTCCTCCATCAGCGGAAGTATGCCAACTTATTGTTTGAAACTTTTATCCCACATAAGTCTTTAATAAATTTTTGGTGATCGATGACCATCTACTACTGGTCATTTTTTAGAGTAAAACTAAAACTTAGTAATGTAGGATGGTTAACAGGATAAAGAAAAAACAAGGAAAAAAGAAAATGAATTATGTTCCACTACTTGGACTGAGTTTCTTTCAAGTATTTCTCCATGTTTTGTGTTTATGATGAATTATCCTGTTACAATGCCCCAGGTTCTTGAAGAGGGAGCATCTTATTGATGTTACTGAGGTGTTCAAAACTCTAAAACGTGAGAAGTATTTTCGTTTTGCCAAGCTTATCTTCTACTTGCTTCTGTTCCTCGTAGTAATCTTCAGGTTAGTCTGAATTTTTCCTTGCGTCATTCTGCTTTTCTTCTTAACTATTTGGAAGGTTGGATATTTCTGATTGAGGTTTTCCTTGCTGTTTTCTGTATAGAATAATAATGGTAGCGGGAATGAAATCTGTTTTTGACTCTGCACCTGAGGATATAGACATTCGCTCCACTGTTCTCGAATTCTAGAGTATTTATTTAACCAACTAGCTTAAAGTCGAATCCATCCTTTGTTTTGAAATACGTATATGATTACAATGAAAATAGTCAACTTATTTATTCATTGCAAAGTTCTTAAAGATAATGATGTTACACTGACTTGGGATTGTTTTGTTGGTTTTGGAAGCTATATACCATTACTCTCTGTTCTCTTGACGCCTTTTAGTACCTTGTTAGTAATGCATTATTGCAAGTTTTTGGATTTTGCTCTGTTTGATCCAAATGTTGTCTCTTTCTAACCTTTTCTAGTCCCAATATTTTCTATAAATTAACTTAGAATGTCCAATACATATTTTATGTTAAAAAATGTAGCTTTGTTTAGTTTTATGGTCGACTCCTATGCTTCTTGAGTGAGATCCTGGTACATATGCACTTGCATACACATATTTTCGCCTCTCTTACTGGCATTCTTACATGTATTGAATTAACATGCAATGCAGGCTTACCTTGTCTGCTTTCAACGCATTATCTGATGAAGGCGACGTCCTACATTTATTTTGATTGCGATTCTCTTACTCGAAGTTTGTATTACGGGTTCTATAGCATGTCTGTGGTTGGTATTTGTTTGGGAAGTTACACGCAAGGAAACAAATTTGAACAAAGCAACTTCAAACACGTTCATACAGGTTTTTCCTCCCATATTCCCATTCTTTGCTTTGGTTGGCTCCTCTAGCATTCTCGTAAGACTTTGACCCAAGGAATGCTTGTATGTAGAGAGGATTGAAGTTCATAGATTCTCCAGTTTAAAATGATGTGATTGTAGAATGAGTTTTAGCATTGTAAGCATATTGTTCAATTAGTTGACATGTGATTTGTTTGGTTACTTGACAACTTACCGGTAATTTTCAGGGCTCTCCAAGTTTAGAGTCCCATTTCTTTGCATGTTTTTGAAATATCAGCTTGAGTTAGCCAATTTTTAGT

mRNA sequence

AATCTAAAGAGGAAATTGTGAGTGAAATTGATGAAACTTGGAAATGTGGTTGAAACTGGAAGCAATCATGATGGAACTACTGAAGCTTCATCGCAGTATGTAGCTTTAGACTCTATAGAGTTCAAACTCTCAAGAACACTGAACTAGCGAGATCGCCTTACCATCAACAATCAAGCTTTGAGTTCTGGAATTTCTGAACTGACGCTGCGCGGTTGTAGAAATGGCGTGGAGTCTGATCTTTTGGTTCGTCTCTTTCTGTATCAACATCGCACTTCTCGTCCTCAACTTTTACCAGCTCTTGGTATTAACGGATTTGGAGGCAGATTATTTGAACATCTATGATTCATCATCTCGCATTAACAAACTTGTTGTTCCAGAGTTTTTGGTGCAAGGACTGTTTTGCTCTCTTTTCCTCTTCACAGGCCACTGGTTCATGTTTCTTATAACCGTCCCTGTTAGCTGTTATCACATAAATTTGTTCTTGAAGAGGGAGCATCTTATTGATGTTACTGAGGTGTTCAAAACTCTAAAACGTGAGAAGTATTTTCGTTTTGCCAAGCTTATCTTCTACTTGCTTCTGTTCCTCGTAGTAATCTTCAGGCTTACCTTGTCTGCTTTCAACGCATTATCTGATGAAGGCGACGTCCTACATTTATTTTGATTGCGATTCTCTTACTCGAAGTTTGTATTACGGGTTCTATAGCATGTCTGTGGTTGGTATTTGTTTGGGAAGTTACACGCAAGGAAACAAATTTGAACAAAGCAACTTCAAACACGTTCATACAGGTTTTTCCTCCCATATTCCCATTCTTTGCTTTGGTTGGCTCCTCTAGCATTCTCGTAAGACTTTGACCCAAGGAATGCTTGTATGTAGAGAGGATTGAAGTTCATAGATTCTCCAGTTTAAAATGATGTGATTGTAGAATGAGTTTTAGCATTGTAAGCATATTGTTCAATTAGTTGACATGTGATTTGTTTGGTTACTTGACAACTTACCGGTAATTTTCAGGGCTCTCCAAGTTTAGAGTCCCATTTCTTTGCATGTTTTTGAAATATCAGCTTGAGTTAGCCAATTTTTAGT

Coding sequence (CDS)

ATGGCGTGGAGTCTGATCTTTTGGTTCGTCTCTTTCTGTATCAACATCGCACTTCTCGTCCTCAACTTTTACCAGCTCTTGGTATTAACGGATTTGGAGGCAGATTATTTGAACATCTATGATTCATCATCTCGCATTAACAAACTTGTTGTTCCAGAGTTTTTGGTGCAAGGACTGTTTTGCTCTCTTTTCCTCTTCACAGGCCACTGGTTCATGTTTCTTATAACCGTCCCTGTTAGCTGTTATCACATAAATTTGTTCTTGAAGAGGGAGCATCTTATTGATGTTACTGAGGTGTTCAAAACTCTAAAACGTGAGAAGTATTTTCGTTTTGCCAAGCTTATCTTCTACTTGCTTCTGTTCCTCGTAGTAATCTTCAGGCTTACCTTGTCTGCTTTCAACGCATTATCTGATGAAGGCGACGTCCTACATTTATTTTGA

Protein sequence

MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLFCSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLLFLVVIFRLTLSAFNALSDEGDVLHLF

Homology

[Close]

BLAST of Carg12732 vs. NCBI nr
Match: XP_022925062.1 (protein cornichon homolog 1-like isoform X1 [Cucurbita moschata] >XP_022966479.1 protein cornichon homolog 1-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 278.9 bits (712), Expect = 1.0e-71
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF 60
           MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF
Sbjct: 1   MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF 60

Query: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL 120
           CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL
Sbjct: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL 120

Query: 121 FLVVIFRLTLSAFNALSDEGDVLHLF 147
           FLVVIFRLTLSAFNALSDE DVLHLF
Sbjct: 121 FLVVIFRLTLSAFNALSDEDDVLHLF 146

[Close]

BLAST of Carg12732 vs. NCBI nr
Match: XP_023518963.1 (protein cornichon homolog 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 277.3 bits (708), Expect = 2.9e-71
Identity = 144/146 (98.63%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF 60
           MAWSLIFWFVSFC NIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF
Sbjct: 1   MAWSLIFWFVSFCFNIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF 60

Query: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL 120
           CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL
Sbjct: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL 120

Query: 121 FLVVIFRLTLSAFNALSDEGDVLHLF 147
           FLVVIFRLTLSAFNALSDE DVLHLF
Sbjct: 121 FLVVIFRLTLSAFNALSDEDDVLHLF 146

[Close]

BLAST of Carg12732 vs. NCBI nr
Match: XP_022967917.1 (protein cornichon homolog 1-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 269.2 bits (687), Expect = 8.0e-69
Identity = 135/146 (92.47%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF 60
           MAW+LIFWF+SFCIN+ALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLV+PEFLVQG+F
Sbjct: 1   MAWNLIFWFISFCINVALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVIPEFLVQGVF 60

Query: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL 120
           CSLFLFTGHWFMFLITVPVSCYHINLFLK+EHLIDVTEVF+TLKREKYFR AKLIFYLLL
Sbjct: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKKEHLIDVTEVFRTLKREKYFRLAKLIFYLLL 120

Query: 121 FLVVIFRLTLSAFNALSDEGDVLHLF 147
           FLVVIFRLTLSAFN+LSDE D+LHLF
Sbjct: 121 FLVVIFRLTLSAFNSLSDEDDILHLF 146

[Close]

BLAST of Carg12732 vs. NCBI nr
Match: XP_022928681.1 (protein cornichon homolog 1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 268.5 bits (685), Expect = 1.4e-68
Identity = 135/146 (92.47%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF 60
           MAW+LIFWF+SFCIN+ALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLV+PEF+VQG+F
Sbjct: 1   MAWNLIFWFISFCINVALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVIPEFVVQGVF 60

Query: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL 120
           CSLFLFTGHWFMFLITVPVSCYHINLFLK+EHLIDVTEVF+TLKREKYFR AKLIFYLLL
Sbjct: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKKEHLIDVTEVFRTLKREKYFRLAKLIFYLLL 120

Query: 121 FLVVIFRLTLSAFNALSDEGDVLHLF 147
           FLVVIFRLTLSAFN+LSDE DVLHLF
Sbjct: 121 FLVVIFRLTLSAFNSLSDEDDVLHLF 146

[Close]

BLAST of Carg12732 vs. NCBI nr
Match: XP_023543606.1 (protein cornichon homolog 1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268.1 bits (684), Expect = 1.8e-68
Identity = 135/146 (92.47%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF 60
           MAW LIFWF+SFCIN+ALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLV+PEF+VQG+F
Sbjct: 1   MAWDLIFWFISFCINVALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVIPEFVVQGVF 60

Query: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL 120
           CSLFLFTGHWFMFLITVPVSCYHINLFLK+EHLIDVTEVF+TLKREKYFR AKLIFYLLL
Sbjct: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKKEHLIDVTEVFRTLKREKYFRLAKLIFYLLL 120

Query: 121 FLVVIFRLTLSAFNALSDEGDVLHLF 147
           FLVVIFRLTLSAFN+LSDE DVLHLF
Sbjct: 121 FLVVIFRLTLSAFNSLSDEDDVLHLF 146

[Close]

BLAST of Carg12732 vs. TAIR10
Match: AT3G12180.1 (Cornichon family protein)

HSP 1 Score: 161.8 bits (408), Expect = 3.3e-40
Identity = 80/146 (54.79%), Postives = 111/146 (76.03%), Query Frame = 0


Query: 1   MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF 60
           MAW L  W VSF +++AL+   FYQ++ LTDLEADYLN +++S+RIN+LV+PEF++QG  
Sbjct: 1   MAWDLFLWIVSFFVSLALVASVFYQVICLTDLEADYLNPFETSTRINRLVIPEFILQGSL 60

Query: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL 120
           C LFL T HW  FL+ VPV+ YH  L+ +R +LIDVTEVF+ +  EK  R+ KL FY+ L
Sbjct: 61  CLLFLLTWHWVFFLVAVPVTVYHAMLYKERRYLIDVTEVFRGISFEKKLRYTKLGFYVFL 120

Query: 121 FLVVIFRLTLSAFNALSDEGDVLHLF 147
           F++V+FRLTLSA  + +++ D+LHLF
Sbjct: 121 FIMVVFRLTLSAVYSFTEDDDLLHLF 146

[Close]

BLAST of Carg12732 vs. TAIR10
Match: AT1G12390.1 (Cornichon family protein)

HSP 1 Score: 118.2 bits (295), Expect = 4.1e-27
Identity = 63/131 (48.09%), Postives = 87/131 (66.41%), Query Frame = 0


Query: 8   WFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLFCSLFLFT 67
           W +SF   IAL+ +  YQL+ L DLE DY+N YDS+SRIN +V+PEF+VQG+ C  +L T
Sbjct: 7   WLISFFFLIALVGIIVYQLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLT 66

Query: 68  GHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLLFLVVIFR 127
           GHWFM L+ +P   Y+ +L+ KR+HL+DVTE+F  L  EK  R  KL + +L   + IF 
Sbjct: 67  GHWFMTLLCLPYLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFW 126

Query: 128 LTLSAFNALSD 139
           +  SA +   D
Sbjct: 127 MIYSALDDYED 137

[Close]

BLAST of Carg12732 vs. TAIR10
Match: AT1G62880.1 (Cornichon family protein)

HSP 1 Score: 113.6 bits (283), Expect = 1.0e-25
Identity = 63/131 (48.09%), Postives = 84/131 (64.12%), Query Frame = 0


Query: 8   WFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLFCSLFLFT 67
           W +SF I I LL L  YQL+ L DLE DY+N YDS+SRIN +V+PE ++QG  C  +L T
Sbjct: 7   WIISFLILITLLGLIVYQLISLADLEFDYINPYDSASRINFVVLPESILQGFLCVFYLVT 66

Query: 68  GHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLLFLVVIFR 127
           GHWFM L+ VP   Y+ +L+ +++HLIDVTE+F  L  EK  R  KL + +L   + IF 
Sbjct: 67  GHWFMALLCVPYLYYNFHLYSRKQHLIDVTEIFNLLDWEKKKRLFKLAYIILTLFLTIFW 126

Query: 128 LTLSAFNALSD 139
           L  S  +   D
Sbjct: 127 LIYSTLDDYED 137

[Close]

BLAST of Carg12732 vs. TAIR10
Match: AT1G12340.1 (Cornichon family protein)

HSP 1 Score: 107.5 bits (267), Expect = 7.3e-24
Identity = 56/120 (46.67%), Postives = 78/120 (65.00%), Query Frame = 0


Query: 19  LVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLFCSLFLFTGHWFMFLITVP 78
           L    + L+ L DLE DY+N YDS+SRIN +V+PEF+VQG+ C  +L TGHWFM L+ +P
Sbjct: 10  LANGIFHLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLP 69

Query: 79  VSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLLFLVVIFRLTLSAFNALSD 138
              Y+ +L+ KR+HL+DVTE+F  L  EK  R  KL + +L   + IF +  SA +   D
Sbjct: 70  YLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFWMIYSALDDYED 129

[Close]

BLAST of Carg12732 vs. TAIR10
Match: AT4G12090.1 (Cornichon family protein)

HSP 1 Score: 100.9 bits (250), Expect = 6.8e-22
Identity = 57/128 (44.53%), Postives = 82/128 (64.06%), Query Frame = 0


Query: 5   LIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLFCSLF 64
           L+ W +SF     L+++  YQL  L DLE D +N YD SSRIN++V+PEF +QGL C  +
Sbjct: 4   LLDWIISFLFLATLIIIVIYQLTCLADLEFDRINPYDVSSRINRMVLPEFGLQGLLCLYY 63

Query: 65  LFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLLFLVV 124
           + TGHWFM ++++P   Y+I L++KREHL DVTE++ T K E+  R  K+    L   + 
Sbjct: 64  ILTGHWFMAVLSLPHLFYNIRLYMKREHLADVTELYNTNKWEQKKRVYKIGHIALSIFIT 123

Query: 125 IFRLTLSA 133
            + L  SA
Sbjct: 124 TYWLIHSA 131

[Close]

BLAST of Carg12732 vs. Swiss-Prot
Match: sp|Q9C7D7|CNIH1_ARATH (Protein cornichon homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At3g12180 PE=2 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 5.9e-39
Identity = 80/146 (54.79%), Postives = 111/146 (76.03%), Query Frame = 0


Query: 1   MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF 60
           MAW L  W VSF +++AL+   FYQ++ LTDLEADYLN +++S+RIN+LV+PEF++QG  
Sbjct: 1   MAWDLFLWIVSFFVSLALVASVFYQVICLTDLEADYLNPFETSTRINRLVIPEFILQGSL 60

Query: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL 120
           C LFL T HW  FL+ VPV+ YH  L+ +R +LIDVTEVF+ +  EK  R+ KL FY+ L
Sbjct: 61  CLLFLLTWHWVFFLVAVPVTVYHAMLYKERRYLIDVTEVFRGISFEKKLRYTKLGFYVFL 120

Query: 121 FLVVIFRLTLSAFNALSDEGDVLHLF 147
           F++V+FRLTLSA  + +++ D+LHLF
Sbjct: 121 FIMVVFRLTLSAVYSFTEDDDLLHLF 146

[Close]

BLAST of Carg12732 vs. Swiss-Prot
Match: sp|Q84W04|CNIH4_ARATH (Protein cornichon homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g12390 PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 7.4e-26
Identity = 63/131 (48.09%), Postives = 87/131 (66.41%), Query Frame = 0


Query: 8   WFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLFCSLFLFT 67
           W +SF   IAL+ +  YQL+ L DLE DY+N YDS+SRIN +V+PEF+VQG+ C  +L T
Sbjct: 7   WLISFFFLIALVGIIVYQLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLT 66

Query: 68  GHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLLFLVVIFR 127
           GHWFM L+ +P   Y+ +L+ KR+HL+DVTE+F  L  EK  R  KL + +L   + IF 
Sbjct: 67  GHWFMTLLCLPYLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFW 126

Query: 128 LTLSAFNALSD 139
           +  SA +   D
Sbjct: 127 MIYSALDDYED 137

[Close]

BLAST of Carg12732 vs. Swiss-Prot
Match: sp|Q8GWT5|CNIH3_ARATH (Protein cornichon homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g62880 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.8e-24
Identity = 63/131 (48.09%), Postives = 84/131 (64.12%), Query Frame = 0


Query: 8   WFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLFCSLFLFT 67
           W +SF I I LL L  YQL+ L DLE DY+N YDS+SRIN +V+PE ++QG  C  +L T
Sbjct: 7   WIISFLILITLLGLIVYQLISLADLEFDYINPYDSASRINFVVLPESILQGFLCVFYLVT 66

Query: 68  GHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLLFLVVIFR 127
           GHWFM L+ VP   Y+ +L+ +++HLIDVTE+F  L  EK  R  KL + +L   + IF 
Sbjct: 67  GHWFMALLCVPYLYYNFHLYSRKQHLIDVTEIFNLLDWEKKKRLFKLAYIILTLFLTIFW 126

Query: 128 LTLSAFNALSD 139
           L  S  +   D
Sbjct: 127 LIYSTLDDYED 137

[Close]

BLAST of Carg12732 vs. Swiss-Prot
Match: sp|Q3EDD7|CNIH2_ARATH (Probable protein cornichon homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g12340 PE=2 SV=2)

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-22
Identity = 56/120 (46.67%), Postives = 78/120 (65.00%), Query Frame = 0


Query: 19  LVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLFCSLFLFTGHWFMFLITVP 78
           L    + L+ L DLE DY+N YDS+SRIN +V+PEF+VQG+ C  +L TGHWFM L+ +P
Sbjct: 10  LANGIFHLVCLADLEFDYINPYDSASRINSVVLPEFIVQGVLCVFYLLTGHWFMTLLCLP 69

Query: 79  VSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLLFLVVIFRLTLSAFNALSD 138
              Y+ +L+ KR+HL+DVTE+F  L  EK  R  KL + +L   + IF +  SA +   D
Sbjct: 70  YLYYNFHLYSKRQHLVDVTEIFNLLNWEKKKRLFKLAYIVLNLFLTIFWMIYSALDDYED 129

[Close]

BLAST of Carg12732 vs. Swiss-Prot
Match: sp|Q9SZ74|CNIH5_ARATH (Protein cornichon homolog 5 OS=Arabidopsis thaliana OX=3702 GN=At4g12090 PE=2 SV=2)

HSP 1 Score: 100.9 bits (250), Expect = 1.2e-20
Identity = 57/128 (44.53%), Postives = 82/128 (64.06%), Query Frame = 0


Query: 5   LIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLFCSLF 64
           L+ W +SF     L+++  YQL  L DLE D +N YD SSRIN++V+PEF +QGL C  +
Sbjct: 4   LLDWIISFLFLATLIIIVIYQLTCLADLEFDRINPYDVSSRINRMVLPEFGLQGLLCLYY 63

Query: 65  LFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLLFLVV 124
           + TGHWFM ++++P   Y+I L++KREHL DVTE++ T K E+  R  K+    L   + 
Sbjct: 64  ILTGHWFMAVLSLPHLFYNIRLYMKREHLADVTELYNTNKWEQKKRVYKIGHIALSIFIT 123

Query: 125 IFRLTLSA 133
            + L  SA
Sbjct: 124 TYWLIHSA 131

[Close]

BLAST of Carg12732 vs. TrEMBL
Match: tr|A0A1S3B4V0|A0A1S3B4V0_CUCME (protein cornichon homolog 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486176 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 2.9e-67
Identity = 133/146 (91.10%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF 60
           MAW+LIFWF+SFC NIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLV+PEFLVQG+F
Sbjct: 1   MAWNLIFWFISFCFNIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVLPEFLVQGVF 60

Query: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL 120
           CSLFLFTGHWFMFLITVPV+CYHINLFLKREHLIDVTEVF+ LKREKYFR AKLIFYLLL
Sbjct: 61  CSLFLFTGHWFMFLITVPVTCYHINLFLKREHLIDVTEVFRALKREKYFRLAKLIFYLLL 120

Query: 121 FLVVIFRLTLSAFNALSDEGDVLHLF 147
           FL+VIFRLTLSAFN+LSDE +VLHLF
Sbjct: 121 FLIVIFRLTLSAFNSLSDEDNVLHLF 146

[Close]

BLAST of Carg12732 vs. TrEMBL
Match: tr|A0A1S3B5Z0|A0A1S3B5Z0_CUCME (protein cornichon homolog 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486176 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 6.5e-59
Identity = 120/147 (81.63%), Postives = 134/147 (91.16%), Query Frame = 0


Query: 1   MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF 60
           MAW+LIFWF+SFC NIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLV+PEFLVQG+F
Sbjct: 1   MAWNLIFWFISFCFNIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVLPEFLVQGVF 60

Query: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL 120
           CSLFLFTGHWFMFLITVPV+CYHINLFLKREHLIDVTEVF+ LKREKYFR AKLIFYLLL
Sbjct: 61  CSLFLFTGHWFMFLITVPVTCYHINLFLKREHLIDVTEVFRALKREKYFRLAKLIFYLLL 120

Query: 121 FLVVIFRLTL-----SAFNALSDEGDV 143
           FL+VIFR+ +     S F++  ++ D+
Sbjct: 121 FLIVIFRIIMVAEMKSVFDSAPEDIDI 147

[Close]

BLAST of Carg12732 vs. TrEMBL
Match: tr|A0A2I4G4D9|A0A2I4G4D9_9ROSI (protein cornichon homolog 1-like isoform X2 OS=Juglans regia OX=51240 GN=LOC109004594 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 5.0e-43
Identity = 90/142 (63.38%), Postives = 114/142 (80.28%), Query Frame = 0


Query: 5   LIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLFCSLF 64
           LI W +SF I++ALL   FYQL++LTDLEADY+NIYD++SRIN++V+PEF+VQG+ C++F
Sbjct: 3   LILWALSFFIDLALLASTFYQLVILTDLEADYINIYDTASRINRIVIPEFVVQGVLCAVF 62

Query: 65  LFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLLFLVV 124
           L T HWFMFL+TVP++CYH+ LFLKR+HL DVTE F+ L  EK FR  KL FYL LF ++
Sbjct: 63  LITWHWFMFLMTVPLACYHVMLFLKRQHLFDVTEAFRFLNAEKKFRMIKLGFYLALFAII 122

Query: 125 IFRLTLSAFNALSDEGDVLHLF 147
            FRL LS FN LSD  D +HLF
Sbjct: 123 TFRLALSVFNFLSDAEDAVHLF 144

[Close]

BLAST of Carg12732 vs. TrEMBL
Match: tr|A0A2P4JLK5|A0A2P4JLK5_QUESU (Protein cornichon like 1 OS=Quercus suber OX=58331 GN=CFP56_51283 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 2.5e-42
Identity = 87/146 (59.59%), Postives = 113/146 (77.40%), Query Frame = 0


Query: 1   MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF 60
           M+  L FW ++F IN+AL+   FYQ+++LTDLEADY+NIYDS++ IN++++PEF+VQG+F
Sbjct: 1   MSMDLFFWIIAFLINLALMASTFYQIVILTDLEADYINIYDSATSINRIILPEFIVQGVF 60

Query: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL 120
           C+ FL T HWFMFLITVPV+CYH+ LFLKR+HL DVTE F+ L  EK FR  KL FYL++
Sbjct: 61  CASFLLTWHWFMFLITVPVTCYHVMLFLKRQHLFDVTEAFRFLNAEKKFRLIKLGFYLVI 120

Query: 121 FLVVIFRLTLSAFNALSDEGDVLHLF 147
           F ++  RL LS F  LSD  D  HLF
Sbjct: 121 FAIITGRLALSVFEFLSDVDDATHLF 146

[Close]

BLAST of Carg12732 vs. TrEMBL
Match: tr|A0A1U8I6Z5|A0A1U8I6Z5_GOSHI (protein cornichon homolog 1-like isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107891277 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 3.6e-41
Identity = 91/146 (62.33%), Postives = 114/146 (78.08%), Query Frame = 0


Query: 1   MAWSLIFWFVSFCINIALLVLNFYQLLVLTDLEADYLNIYDSSSRINKLVVPEFLVQGLF 60
           MAW LIFW V F INIALL  +FYQLL L+DLEAD+LN +++S+RIN +V+PEFL+QG  
Sbjct: 1   MAWDLIFWVVCFFINIALLASSFYQLLSLSDLEADHLNPFEASTRINSIVLPEFLLQGFL 60

Query: 61  CSLFLFTGHWFMFLITVPVSCYHINLFLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLL 120
           C  FL T HWFMFL T+P++ YH+ L+L R+HL+DVTE+F+ L  EK +RF KL  YLLL
Sbjct: 61  CISFLLTWHWFMFLFTLPIAAYHLMLYLNRKHLLDVTEIFRDLNTEKKYRFIKLALYLLL 120

Query: 121 FLVVIFRLTLSAFNALSDEGDVLHLF 147
           F VV+FRL +SAFN+L DE DV H F
Sbjct: 121 FTVVLFRLVISAFNSLHDEVDV-HAF 145

The following BLAST results are available for this feature:

BLAST of Carg12732 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925062.1	1.0e-71	99.32	protein cornichon homolog 1-like isoform X1 [Cucurbita moschata] >XP_022966479.1...	[more]
XP_023518963.1	2.9e-71	98.63	protein cornichon homolog 1-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022967917.1	8.0e-69	92.47	protein cornichon homolog 1-like isoform X2 [Cucurbita maxima]	[more]
XP_022928681.1	1.4e-68	92.47	protein cornichon homolog 1-like isoform X2 [Cucurbita moschata]	[more]
XP_023543606.1	1.8e-68	92.47	protein cornichon homolog 1-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg12732 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G12180.1	3.3e-40	54.79	Cornichon family protein	[more]
AT1G12390.1	4.1e-27	48.09	Cornichon family protein	[more]
AT1G62880.1	1.0e-25	48.09	Cornichon family protein	[more]
AT1G12340.1	7.3e-24	46.67	Cornichon family protein	[more]
AT4G12090.1	6.8e-22	44.53	Cornichon family protein	[more]

BLAST of Carg12732 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9C7D7\|CNIH1_ARATH	5.9e-39	54.79	Protein cornichon homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At3g12180 PE=2 SV...	[more]
sp\|Q84W04\|CNIH4_ARATH	7.4e-26	48.09	Protein cornichon homolog 4 OS=Arabidopsis thaliana OX=3702 GN=At1g12390 PE=1 SV...	[more]
sp\|Q8GWT5\|CNIH3_ARATH	1.8e-24	48.09	Protein cornichon homolog 3 OS=Arabidopsis thaliana OX=3702 GN=At1g62880 PE=2 SV...	[more]
sp\|Q3EDD7\|CNIH2_ARATH	1.3e-22	46.67	Probable protein cornichon homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At1g1234...	[more]
sp\|Q9SZ74\|CNIH5_ARATH	1.2e-20	44.53	Protein cornichon homolog 5 OS=Arabidopsis thaliana OX=3702 GN=At4g12090 PE=2 SV...	[more]

BLAST of Carg12732 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B4V0\|A0A1S3B4V0_CUCME	2.9e-67	91.10	protein cornichon homolog 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486176 P...	[more]
tr\|A0A1S3B5Z0\|A0A1S3B5Z0_CUCME	6.5e-59	81.63	protein cornichon homolog 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486176 P...	[more]
tr\|A0A2I4G4D9\|A0A2I4G4D9_9ROSI	5.0e-43	63.38	protein cornichon homolog 1-like isoform X2 OS=Juglans regia OX=51240 GN=LOC1090...	[more]
tr\|A0A2P4JLK5\|A0A2P4JLK5_QUESU	2.5e-42	59.59	Protein cornichon like 1 OS=Quercus suber OX=58331 GN=CFP56_51283 PE=4 SV=1	[more]
tr\|A0A1U8I6Z5\|A0A1U8I6Z5_GOSHI	3.6e-41	62.33	protein cornichon homolog 1-like isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0016192	vesicle-mediated transport

Vocabulary: **INTERPRO**
Term	Definition
IPR003377	Cornichon

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12732-RA	Carg12732-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003377	Cornichon	SMART	SM01398	Cornichon_2	coord: 5..126 e-value: 1.6E-51 score: 187.2
IPR003377	Cornichon	PFAM	PF03311	Cornichon	coord: 6..126 e-value: 8.9E-37 score: 126.0
None	No IPR available	PANTHER	PTHR12290	CORNICHON-RELATED	coord: 5..134
None	No IPR available	PANTHER	PTHR12290:SF18	PROTEIN CORNICHON HOMOLOG 3-RELATED	coord: 5..134

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12732	Cla008082	Watermelon (97103) v1	carwmB0274
Carg12732	Csa4G575860	Cucumber (Chinese Long) v2	carcuB0309
Carg12732	MELO3C009082	Melon (DHL92) v3.5.1	carmeB0288
Carg12732	ClCG04G000520	Watermelon (Charleston Gray)	carwcgB0276
Carg12732	CSPI04G21190	Wild cucumber (PI 183967)	carcpiB0315
Carg12732	CmaCh03G000820	Cucurbita maxima (Rimu)	carcmaB0397
Carg12732	CmaCh07G013050	Cucurbita maxima (Rimu)	carcmaB0398
Carg12732	CmoCh03G000850	Cucurbita moschata (Rifu)	carcmoB0394
Carg12732	CmoCh07G013500	Cucurbita moschata (Rifu)	carcmoB0395
Carg12732	Lsi01G019130	Bottle gourd (USVL1VR-Ls)	carlsiB259
Carg12732	Cp4.1LG19g00760	Cucurbita pepo (Zucchini)	carcpeB0400
Carg12732	Cp4.1LG10g11810	Cucurbita pepo (Zucchini)	carcpeB0398
Carg12732	CsGy4G019800	Cucumber (Gy14) v2	carcgybB0297
Carg12732	MELO3C009082.2	Melon (DHL92) v3.6.1	carmedB0299
Carg12732	CsaV3_4G031560	Cucumber (Chinese Long) v3	carcucB0314
Carg12732	Cla97C04G068860	Watermelon (97103) v2	carwmbB0292
Carg12732	Bhi03G002155	Wax gourd	carwgoB0373

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg12732	Carg22470	Silver-seed gourd	carcarB230

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12732	Bottle gourd (USVL1VR-Ls)	carlsiB260
Carg12732	Watermelon (97103) v1	carwmB0277
Carg12732	Watermelon (97103) v1	carwmB0278