CSPI04G21190 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G21190
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionCornichon family protein
LocationChr4 : 19631179 .. 19632587 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATTTTTTTTCTTGGTGTGTTTATGACATGTATTATTCGGTTACAATGTCTCAGATTTTTGAAGAGGGAGCACCTTATTGATGTCACCGAGGTATTTAGAGCTCTTAAGCGTGAGAAGTATTTCCGTTTGGCCAAGCTTATCTTCTACTTGCTTCTTTTCCTCGTAGTAATTTTCAGGTCAGTTTGCATTTTTCATTTTCTCATTCCTCTCAGCTATTTCGAAGTTGGTATTTTCCTGATTGAAGTTTTCTTTATTATTTTCTGTATAGAATAATAGTGGTTGCGGGAATGAAATCTGTTTTTGACTCTGCACCTGAAGATTTAGACATTCGCTCCTCTGTTCTCGAATTCTAGAGTTTTTTACTTAACCATTTATCATTCCTTTTGAAATATATACACGACTACATTTGACATTATCTTCTTTTTTATTCATTGCAAAGTTCTTAAAGATGACGTTGCTCTAATTTTGAGCTTGTTATGTTGGTTTGGGAACCTATACACCATATTTCTCTCTATTGCCTTGGTGCTAAGTATGTTGTTACAGTAATGCATTACTCCAGGATCTTGCACTTTGTTCTGTTTGCAATTCGTGCTTCTTTGTAGCTTTTGCTGGTCCAGTATGTGATATAACTTAATTCAGGATGTTTATAGCTTTTCAAATTTTAAAGAGATGTTGCATTTTGTTATTTTATGGAGGACTCCCATGCTTCTCAACATCCCGGTACATATGCACACGTATACACATGTATTGTTCATCCATGATGTATCGAGGTTTCATTTCGTCTTACCAATAAAGATAAAGCACGAACATTGATGTTGTTCATTTGGAACTTCACCATCTTACTAGCATTCTTACCTGTATTCAATTAACATGTAATGCAGGCTTACTTTGTCTGCATTCAACTCCTTATCTGACGAAGACGATGTCCTACATTTATTTTGATTGCCATTTTGATATCCGAAGTTTGTATTACGGGTTCTATCGTGCATCGGGTTGATATTTATGTGGGAATTACACGAAGGGAATGAATTTGGACTCAGCAACTTCAAACACATTCAAACAGGTTTTCTCGATTCCCATTCTATAGTTTGGTAGGCTTCAGTAGCAATCTCATTGACTTACACCTAAGGAATTCTTGTATGTAGAAGATAGCATTGTAGGCATATTATGTGATTTGATTTGTTTTGGTACCTTCCTTAACTCACTGCTAAGTACTGCTAAGTTGAGGGACCTTCAAGATTAGGGTTTCATATTTTATCATTTTTGGAATATCAACTCGTTTCAAGTTTTAGTGTTTTTGTAAGGATTGAAATGATTTTCATCATTCAATACCTAACAATTGTATTAAGTGTTGTTCTCTTCAAAGGATACATTTTTACTAACATTGTAAACTATTTTTAGGGCTTGT

mRNA sequence

ATGACATGTATTATTCGGTTACAATGTCTCAGATTTTTGAAGAGGGAGCACCTTATTGATGTCACCGAGGTATTTAGAGCTCTTAAGCGTGAGAAGTATTTCCGTTTGGCCAAGCTTATCTTCTACTTGCTTCTTTTCCTCGTAGTAATTTTCAGGCTTACTTTGTCTGCATTCAACTCCTTATCTGACGAAGACGATGTCCTACATTTATTTTGA

Coding sequence (CDS)

ATGACATGTATTATTCGGTTACAATGTCTCAGATTTTTGAAGAGGGAGCACCTTATTGATGTCACCGAGGTATTTAGAGCTCTTAAGCGTGAGAAGTATTTCCGTTTGGCCAAGCTTATCTTCTACTTGCTTCTTTTCCTCGTAGTAATTTTCAGGCTTACTTTGTCTGCATTCAACTCCTTATCTGACGAAGACGATGTCCTACATTTATTTTGA
Homology
[Close]
BLAST of CSPI04G21190 vs. Swiss-Prot
Match: CNIH1_ARATH (Protein cornichon homolog 1 OS=Arabidopsis thaliana GN=At3g12180 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 9.5e-11
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = 1 

Query: 12  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLVVIFRLTLSAFNSLSDEDDVLHLF 71
           + +R +LIDVTEVFR +  EK  R  KL FY+ LF++V+FRLTLSA  S +++DD+LHLF
Sbjct: 87  YKERRYLIDVTEVFRGISFEKKLRYTKLGFYVFLFIMVVFRLTLSAVYSFTEDDDLLHLF 146

[Close]
BLAST of CSPI04G21190 vs. TrEMBL
Match: A0A0A0KYX8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G575860 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 3.9e-19
Identity = 56/72 (77.78%), Postives = 62/72 (86.11%), Query Frame = 1 

Query: 1  MTCIIRLQCLRFLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLVVIFRLTL----- 60
          MTCIIRLQCLRFLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLVVIFR+ +     
Sbjct: 1  MTCIIRLQCLRFLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLVVIFRIIVVAGMK 60

Query: 61 SAFNSLSDEDDV 68
          S F+S  ++ D+
Sbjct: 61 SVFDSAPEDLDI 72

[Close]
BLAST of CSPI04G21190 vs. TrEMBL
Match: A0A087H8Y0_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G132300 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.5e-10
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 1 

Query: 14  KREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLVVIFRLTLSAFNSLSDEDDVLHLF 72
           +R HLIDVTEVFR +  EK FR  KL FY+ LF++V+FRLTLSA  S +++DD+LHLF
Sbjct: 370 ERRHLIDVTEVFRGISFEKKFRFTKLGFYIFLFIMVVFRLTLSAVYSFTEDDDLLHLF 427

[Close]
BLAST of CSPI04G21190 vs. TrEMBL
Match: D7KZQ5_ARALL (Cornichon family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_317999 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 9.6e-10
Identity = 36/60 (60.00%), Postives = 47/60 (78.33%), Query Frame = 1 

Query: 12  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLVVIFRLTLSAFNSLSDEDDVLHLF 71
           F +R +LIDVTEVFR +  EK FR  KL FY+ LF++V+FRLTLSA  S +++DD+LHLF
Sbjct: 87  FNERRYLIDVTEVFRGISFEKKFRFTKLGFYVFLFIMVVFRLTLSAVYSFTEDDDLLHLF 146

[Close]
BLAST of CSPI04G21190 vs. TrEMBL
Match: M4FC86_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 9.6e-10
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 1 

Query: 14  KREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLVVIFRLTLSAFNSLSDEDDVLHLF 72
           KR HLIDVTEVFR +  EK  R  KL FY+ LF++V+FRLTLS   SL+++DD+LHLF
Sbjct: 352 KRRHLIDVTEVFRGIDFEKKLRFTKLGFYISLFILVVFRLTLSVVYSLTEDDDLLHLF 409

[Close]
BLAST of CSPI04G21190 vs. TrEMBL
Match: A0A078IKQ0_BRANA (BnaA01g30800D protein OS=Brassica napus GN=BnaA01g30800D PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 9.6e-10
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 1 

Query: 14  KREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLVVIFRLTLSAFNSLSDEDDVLHLF 72
           KR HLIDVTEVFR +  EK  R  KL FY+ LF++V+FRLTLS   SL+++DD+LHLF
Sbjct: 89  KRRHLIDVTEVFRGIDFEKKLRFTKLGFYISLFILVVFRLTLSVVYSLTEDDDLLHLF 146

[Close]
BLAST of CSPI04G21190 vs. TAIR10
Match: AT3G12180.1 (AT3G12180.1 Cornichon family protein)

HSP 1 Score: 67.0 bits (162), Expect = 5.4e-12
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = 1 

Query: 12  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLVVIFRLTLSAFNSLSDEDDVLHLF 71
           + +R +LIDVTEVFR +  EK  R  KL FY+ LF++V+FRLTLSA  S +++DD+LHLF
Sbjct: 87  YKERRYLIDVTEVFRGISFEKKLRYTKLGFYVFLFIMVVFRLTLSAVYSFTEDDDLLHLF 146

[Close]
BLAST of CSPI04G21190 vs. NCBI nr
Match: gi|449453826|ref|XP_004144657.1| (PREDICTED: protein cornichon homolog 1 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 1.9e-22
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

Query: 12  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLVVIFRLTLSAFNSLSDEDDVLHLF 71
           FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLVVIFRLTLSAFNSLSDEDDVLHLF
Sbjct: 87  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLVVIFRLTLSAFNSLSDEDDVLHLF 146

[Close]
BLAST of CSPI04G21190 vs. NCBI nr
Match: gi|659083291|ref|XP_008442270.1| (PREDICTED: protein cornichon homolog 1 isoform X2 [Cucumis melo])

HSP 1 Score: 110.9 bits (276), Expect = 9.2e-22
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 1 

Query: 12  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLVVIFRLTLSAFNSLSDEDDVLHLF 71
           FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFL+VIFRLTLSAFNSLSDED+VLHLF
Sbjct: 87  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLIVIFRLTLSAFNSLSDEDNVLHLF 146

[Close]
BLAST of CSPI04G21190 vs. NCBI nr
Match: gi|700199737|gb|KGN54895.1| (hypothetical protein Csa_4G575860 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 5.6e-19
Identity = 56/72 (77.78%), Postives = 62/72 (86.11%), Query Frame = 1 

Query: 1  MTCIIRLQCLRFLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLVVIFRLTL----- 60
          MTCIIRLQCLRFLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLVVIFR+ +     
Sbjct: 1  MTCIIRLQCLRFLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLVVIFRIIVVAGMK 60

Query: 61 SAFNSLSDEDDV 68
          S F+S  ++ D+
Sbjct: 61 SVFDSAPEDLDI 72

[Close]
BLAST of CSPI04G21190 vs. NCBI nr
Match: gi|659083289|ref|XP_008442268.1| (PREDICTED: protein cornichon homolog 1 isoform X1 [Cucumis melo])

HSP 1 Score: 80.9 bits (198), Expect = 1.0e-12
Identity = 44/61 (72.13%), Postives = 51/61 (83.61%), Query Frame = 1 

Query: 12  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLVVIFRLTL-----SAFNSLSDEDD 68
           FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFL+VIFR+ +     S F+S  ++ D
Sbjct: 87  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLIVIFRIIMVAEMKSVFDSAPEDID 146

[Close]
BLAST of CSPI04G21190 vs. NCBI nr
Match: gi|225441700|ref|XP_002282874.1| (PREDICTED: protein cornichon homolog 1 isoform X2 [Vitis vinifera])

HSP 1 Score: 77.8 bits (190), Expect = 8.6e-12
Identity = 37/60 (61.67%), Postives = 48/60 (80.00%), Query Frame = 1 

Query: 12  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLVVIFRLTLSAFNSLSDEDDVLHLF 71
           F+KR+HLIDVTEVFR L  EK +R+AKL FYL LF++VI RL +  FNS+ DE+D +H+F
Sbjct: 87  FMKRQHLIDVTEVFRTLSAEKKYRVAKLAFYLFLFIIVIIRLVICIFNSVIDEEDAVHIF 146

The following BLAST results are available for this feature:
BLAST of CSPI04G21190 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CNIH1_ARATH9.5e-1156.67Protein cornichon homolog 1 OS=Arabidopsis thaliana GN=At3g12180 PE=2 SV=1[more]
BLAST of CSPI04G21190 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KYX8_CUCSA3.9e-1977.78Uncharacterized protein OS=Cucumis sativus GN=Csa_4G575860 PE=4 SV=1[more]
A0A087H8Y0_ARAAL2.5e-1062.07Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G132300 PE=4 SV=1[more]
D7KZQ5_ARALL9.6e-1060.00Cornichon family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_31799... [more]
M4FC86_BRARP9.6e-1062.07Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
A0A078IKQ0_BRANA9.6e-1062.07BnaA01g30800D protein OS=Brassica napus GN=BnaA01g30800D PE=4 SV=1[more]
BLAST of CSPI04G21190 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G12180.15.4e-1256.67 Cornichon family protein[more]
BLAST of CSPI04G21190 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449453826|ref|XP_004144657.1|1.9e-22100.00PREDICTED: protein cornichon homolog 1 [Cucumis sativus][more]
gi|659083291|ref|XP_008442270.1|9.2e-2296.67PREDICTED: protein cornichon homolog 1 isoform X2 [Cucumis melo][more]
gi|700199737|gb|KGN54895.1|5.6e-1977.78hypothetical protein Csa_4G575860 [Cucumis sativus][more]
gi|659083289|ref|XP_008442268.1|1.0e-1272.13PREDICTED: protein cornichon homolog 1 isoform X1 [Cucumis melo][more]
gi|225441700|ref|XP_002282874.1|8.6e-1261.67PREDICTED: protein cornichon homolog 1 isoform X2 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003377Cornichon
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
biological_process GO:0035556 intracellular signal transduction
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005622 intracellular
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G21190.1CSPI04G21190.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003377CornichonPFAMPF03311Cornichoncoord: 7..51
score: 3.

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G21190Cla008082Watermelon (97103) v1cpiwmB338
CSPI04G21190Csa4G575860Cucumber (Chinese Long) v2cpicuB181
CSPI04G21190CsaV3_4G031560Cucumber (Chinese Long) v3cpicucB212
CSPI04G21190Cla97C04G068860Watermelon (97103) v2cpiwmbB308
CSPI04G21190Cucsa.069710Cucumber (Gy14) v1cgycpiB066
CSPI04G21190CmoCh07G013500Cucurbita moschata (Rifu)cmocpiB858
CSPI04G21190Carg12732Silver-seed gourdcarcpiB0315
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G21190Cucumber (Gy14) v2cgybcpiB169