Carg12720 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12720
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	E3 ubiquitin-protein ligase
Location	Cucurbita_argyrosperma_scaffold_021 : 933391 .. 937004 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATAATAATATTATGAAGTTGATTTTTCTGTGTTTTGAAGCAGTTTTTTTTGCCAATAAAAGCCGGGATGTGTTTTGGCACAATCGAAAGTTAAGCTAAGATGTTAAATTCATAGTTTCGATAAGCTTGGACTGGTTAAGTTTGGGGTTGGAAGTCGGAGCTTGGATTGCACAAAATAGTGGGCTGTATAAACTTGATGTTTTTACAATTAGAGTTTGCTTTTTATATTTATAATTTTATAAATTTCATATGTACTATAAAAGATTGGTTTCAAACTCTGAATTTGTGTAATTTGTAGCATTAGTGAACTTATAGCTTGGAATAATTATGTCAGTATCCTAACCCATGACATATACGGTATCATTTATCCGTTTGGATTTCAAAAAAATGAGGTTGTTGCTAAGTCCTATACATTATGAAGCATTGTTGATCGTATTTAGTTTTCATTATCGCTTGACATTCGCCCAAATTACGTAAGCAAGTCTCCAGACAACATGAAGCGTTCTACCTAATATCTTTACTGATATACCATTTTTTATTGTGTGGTTTAACAGGATTGAACTTGTGGATGGGTGATTGTTGGCATATAGTTAGGAGTTTTTGTTAATAGCTCAAAGAATTCTATTAAAATTTAAATAAGCCATGGCTCCTGGAAGCAGTACCTGCAAAAAAGTAGATTCTCACCCTTCAGTTTCTGGTCATGACATAGCAATATCTAAATCAGAGAATAATCCTACAACATCAAAAGCCTCACTTGGTTTGGGTGGGAAACTTGGAGTTTATTCAACCAATGGTGTGCAAGAATTGCTAGAGTGCCCTGTCTGCACAAATCTGATGTACCCTCCAATTTACCAGGTATGGTCTGTATACCCTGTTTTTTCTCTTTTACTTTTTCTCGTGTAATTTATTCTATGCTCGGAAGTGTTTTTGGCATGACAAAAAGTACTTATTCCGTGGGTAAAAGCACTTTTCACTCAAAATAATTGTGTTTGGGAGCAACATAAATGCTTTTGGAAAAAAATTCAAATGAACCTTAAAAGGTTGTGTGAGAATGCACTTGTTGGGTGTTTTTGGCTTCAGTTCTTGTTTAGGAAGCCTTTTTAGGAGTGTAGAAACAAGCATCAAAGCAATTTGATCTCAAGTACTTTTATTGCTTGTAAAGAAGTATTTTTCCTAACCATACTTTTTTATAAGCACTCTCAAACACGCCTTTAAACTGAATTTAGACTGACCTTGTAAACTTAAGCAATACTGTTGTGAGTTGCATAAAATTTGCCAATGGAGAAATGCTTTTTTAAAACTACATTCATCTGTAAAGCATCTTCCATACTATGCGCAATGTGCTTTAGAGTCAGTTAAATGATTGGATCCAATTGATGAAAGCTGCTGTTAATTTCTGTAAGGAAAATTCGTTTCTCCTTCAAAAATGTGTGTTTTAAGGTTGAATGTAGTTTGCAGAATTTTTTAAGAATCTTCATAAGTTGATAATTTCATTCTTTTGCAGAGTTTTTTTAGAATGTTTTCCATAGTAACGTGAGGTCCATGCATATTGGAATTGATGTGTTTGACCTTCCATGTTTGATATGATTGCTTTAACTTTCTTTTTATGAAAGAAAACAACTGAAAAACATGTTTAGAAAGATTTTTTTTTTTTCATTTCTTGTTCCCCCGTATTTATTATTATTATTAATCCAAAGTTTTTCTTCAACTTTTCTTCTTTAAAAATAAATCATTCAAAATTATTAGGTTATTTTTATATTTATCAGGAACGTTTTAAGTAAAATAATGGAAAAAAATATATGTTTTTGAGAAACTGAAGATCCAAGAAATCGGATTTTTTTTTTTTTTTTCCTTTTCAATTTTGAATTTGCATACAATTTTGGGGGTGTTTCTTAAAAATGAGAAACCTTGTCTTTAGTTTTCGAAATTTGCCTTCTATTTTAAAAAATTTTCGTAGTCTGTGCAAACCAAAGAAAGAATCTACTAAATGAGCATTTTTTAAAAACAGAAAACCAAAAAAAAAAAAAAAAAAAGAAGTTATTGGAGGGATCTTGACTTTTTCTTCATTTGCTCTAACTCAATCTTTACTTGAATTTTCATATGAATTGAAGAATTATTACTTGTTTAAGTGGATTTCTGCTGTTTTAAAGGCATAGATTACGAATTTGTATAGCCTAATAGATTCATTAGAGGGTTGGTTTGGACTCTACTGTGGAAAATTCTCCCTATTGCTGGTTCTTAAGTTTTTTTTCTTAATATTAAAGTTGCATTGAAGACTTGGAAGATCTCTTTATTCTTGAATCTTTATGACATGGAGATGTGTATACTTTCTGCTTCTGCTTTGTTTCGGACTTGCTTGACTGGCTTTTGAACTTTAGTGCCCGAATGGCCACACATTGTGCTCAAACTGCAAGATCAGAGTTAGCAACTCTTGCCCAACCTGTCGTCATGAACTCGGAAACATAAGGTGCTTGGCATTGGAGAAGGTAGCTGAGTCGCTGGAAATCCCTTGCAGATACCAGAACTTGGGCTGTCAAGACATTTTTCCTTACTACAGTAAGCTTAAGCACGAACAACACTGTCGATTCCGTCCTTACAACTGCCCTTATGCTGGATCAGAGTGCTCGGTCACGGGCGACATCCAGTCGCTTGTTGCTCATCTCAAAGATGATCACAAGGTTGACATGCATGATGGATGTACCTTCAATCATCGCTATGTGAAATCAAATCCACATGAAGTCGAAAACGCCACATGGATGCTAACGGTAGGTGCTTACTCTATATAGCATTTTAATCTACTCTCTCGCCGTGATGACTTCATATAGCATTAACTATATGCAGTAGAGTCAAGTGGTAAATCTATTGACTATATATATATATATATATATTTCTTTTTGATAAGATGCACAATCTGAACTATGATAAACGGTTACATTTGTACCAATGTTCTACCTCGAATTTTCATGTGTAACTTTTAGATAAAGATCTGATAAACCCAGTTTTCTTCCGTTTCTGAACATTGAATGTTTTATAATACCTTGCATTGGCAGGTTTTCAACTGCTTTGGAAGGCAGTTCTGCTTGCATTTTGAGGCATTCCAGCTAGGGATGGCACCTGTTTACATGGCGTTCTTACGATTCATGGGTGACGATAACGAAGCAAAGAAGTTCAGCTACAGTTTGGAAGTCGGTGGCAACGGGCGAAAACTGATATGGCAAGGAATTCCAAGGGGCATCCGCGACAGTCACCGAAAAGTTCGTGACAGTCAAGACGGTCTCATCATTCAAAGAAACCTGGCACTGTATTTTTCAGGGGGGGAAAGGCAAGAGCTGAAGCTGAGAATCACAGGCCGAATATGGAAGGAAGAATGAGAATGAGAACGAGGACGGTGCGATGACGATGCCGCGGTGTTGAGGTAAATGTATTGTTGTACAGTCAAAACAAGCTTGTTAGGCCAGCAGAGCAGGGGTTTGCTCCAAGTGCTGAAGAAGCTTTTGGTGAAACTTCCAAGCTAATATAAAAAGTGTAATCTCTTACCAGATGAATTAGAAAGGCATTTTGCTGCCTCGTGTTTTATGTATTTAAGGGAAGTTTCTCCATGTCTCTTTTTTTGG

mRNA sequence

TATAATAATATTATGAAGTTGATTTTTCTGTGTTTTGAAGCAGTTTTTTTTGCCAATAAAAGCCGGGATGTGTTTTGGCACAATCGAAAGTTAAGCTAAGATGTTAAATTCATAGTTTCGATAAGCTTGGACTGGTTAAGTTTGGGGTTGGAAGTCGGAGCTTGGATTGCACAAAATAGTGGGCTGTATAAACTTGATGTTTTTACAATTAGAGTTTGCTTTTTATATTTATAATTTTATAAATTTCATATGTACTATAAAAGATTGGTTTCAAACTCTGAATTTGTGTAATTTGTAGCATTAGTGAACTTATAGCTTGGAATAATTATGTCAGTATCCTAACCCATGACATATACGGTATCATTTATCCGTTTGGATTTCAAAAAAATGAGGTTGTTGCTAAGTCCTATACATTATGAAGCATTGTTGATCGTATTTAGTTTTCATTATCGCTTGACATTCGCCCAAATTACGTAAGCAAGTCTCCAGACAACATGAAGCGTTCTACCTAATATCTTTACTGATATACCATTTTTTATTGTGTGGTTTAACAGGATTGAACTTGTGGATGGGTGATTGTTGGCATATAGTTAGGAGTTTTTGTTAATAGCTCAAAGAATTCTATTAAAATTTAAATAAGCCATGGCTCCTGGAAGCAGTACCTGCAAAAAAGTAGATTCTCACCCTTCAGTTTCTGGTCATGACATAGCAATATCTAAATCAGAGAATAATCCTACAACATCAAAAGCCTCACTTGGTTTGGGTGGGAAACTTGGAGTTTATTCAACCAATGGTGTGCAAGAATTGCTAGAGTGCCCTGTCTGCACAAATCTGATGTACCCTCCAATTTACCAGTGCCCGAATGGCCACACATTGTGCTCAAACTGCAAGATCAGAGTTAGCAACTCTTGCCCAACCTGTCGTCATGAACTCGGAAACATAAGGTGCTTGGCATTGGAGAAGGTAGCTGAGTCGCTGGAAATCCCTTGCAGATACCAGAACTTGGGCTGTCAAGACATTTTTCCTTACTACAGTAAGCTTAAGCACGAACAACACTGTCGATTCCGTCCTTACAACTGCCCTTATGCTGGATCAGAGTGCTCGGTCACGGGCGACATCCAGTCGCTTGTTGCTCATCTCAAAGATGATCACAAGGTTGACATGCATGATGGATGTACCTTCAATCATCGCTATGTGAAATCAAATCCACATGAAGTCGAAAACGCCACATGGATGCTAACGGTTTTCAACTGCTTTGGAAGGCAGTTCTGCTTGCATTTTGAGGCATTCCAGCTAGGGATGGCACCTGTTTACATGGCGTTCTTACGATTCATGGGTGACGATAACGAAGCAAAGAAGTTCAGCTACAGTTTGGAAGTCGGTGGCAACGGGCGAAAACTGATATGGCAAGGAATTCCAAGGGGCATCCGCGACAGTCACCGAAAAGTTCGTGACAGTCAAGACGGTCTCATCATTCAAAGAAACCTGGCACTGTATTTTTCAGGGGGGGAAAGGCAAGAGCTGAAGCTGAGAATCACAGGCCGAATATGGAAGGAAGAATGAGAATGAGAACGAGGACGGTGCGATGACGATGCCGCGGTGTTGAGGTAAATGTATTGTTGTACAGTCAAAACAAGCTTGTTAGGCCAGCAGAGCAGGGGTTTGCTCCAAGTGCTGAAGAAGCTTTTGGTGAAACTTCCAAGCTAATATAAAAAGTGTAATCTCTTACCAGATGAATTAGAAAGGCATTTTGCTGCCTCGTGTTTTATGTATTTAAGGGAAGTTTCTCCATGTCTCTTTTTTTGG

Coding sequence (CDS)

ATGGCTCCTGGAAGCAGTACCTGCAAAAAAGTAGATTCTCACCCTTCAGTTTCTGGTCATGACATAGCAATATCTAAATCAGAGAATAATCCTACAACATCAAAAGCCTCACTTGGTTTGGGTGGGAAACTTGGAGTTTATTCAACCAATGGTGTGCAAGAATTGCTAGAGTGCCCTGTCTGCACAAATCTGATGTACCCTCCAATTTACCAGTGCCCGAATGGCCACACATTGTGCTCAAACTGCAAGATCAGAGTTAGCAACTCTTGCCCAACCTGTCGTCATGAACTCGGAAACATAAGGTGCTTGGCATTGGAGAAGGTAGCTGAGTCGCTGGAAATCCCTTGCAGATACCAGAACTTGGGCTGTCAAGACATTTTTCCTTACTACAGTAAGCTTAAGCACGAACAACACTGTCGATTCCGTCCTTACAACTGCCCTTATGCTGGATCAGAGTGCTCGGTCACGGGCGACATCCAGTCGCTTGTTGCTCATCTCAAAGATGATCACAAGGTTGACATGCATGATGGATGTACCTTCAATCATCGCTATGTGAAATCAAATCCACATGAAGTCGAAAACGCCACATGGATGCTAACGGTTTTCAACTGCTTTGGAAGGCAGTTCTGCTTGCATTTTGAGGCATTCCAGCTAGGGATGGCACCTGTTTACATGGCGTTCTTACGATTCATGGGTGACGATAACGAAGCAAAGAAGTTCAGCTACAGTTTGGAAGTCGGTGGCAACGGGCGAAAACTGATATGGCAAGGAATTCCAAGGGGCATCCGCGACAGTCACCGAAAAGTTCGTGACAGTCAAGACGGTCTCATCATTCAAAGAAACCTGGCACTGTATTTTTCAGGGGGGGAAAGGCAAGAGCTGAAGCTGAGAATCACAGGCCGAATATGGAAGGAAGAATGA

Protein sequence

MAPGSSTCKKVDSHPSVSGHDIAISKSENNPTTSKASLGLGGKLGVYSTNGVQELLECPVCTNLMYPPIYQCPNGHTLCSNCKIRVSNSCPTCRHELGNIRCLALEKVAESLEIPCRYQNLGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIQSLVAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKKFSYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITGRIWKEE

Homology

[Close]

BLAST of Carg12720 vs. NCBI nr
Match: XP_023518392.1 (E3 ubiquitin-protein ligase SINAT2-like [Cucurbita pepo subsp. pepo] >XP_023518393.1 E3 ubiquitin-protein ligase SINAT2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 655.2 bits (1689), Expect = 1.1e-184
Identity = 306/306 (100.00%), Postives = 306/306 (100.00%), Query Frame = 0


Query: 1   MAPGSSTCKKVDSHPSVSGHDIAISKSENNPTTSKASLGLGGKLGVYSTNGVQELLECPV 60
           MAPGSSTCKKVDSHPSVSGHDIAISKSENNPTTSKASLGLGGKLGVYSTNGVQELLECPV
Sbjct: 1   MAPGSSTCKKVDSHPSVSGHDIAISKSENNPTTSKASLGLGGKLGVYSTNGVQELLECPV 60

Query: 61  CTNLMYPPIYQCPNGHTLCSNCKIRVSNSCPTCRHELGNIRCLALEKVAESLEIPCRYQN 120
           CTNLMYPPIYQCPNGHTLCSNCKIRVSNSCPTCRHELGNIRCLALEKVAESLEIPCRYQN
Sbjct: 61  CTNLMYPPIYQCPNGHTLCSNCKIRVSNSCPTCRHELGNIRCLALEKVAESLEIPCRYQN 120

Query: 121 LGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIQSLVAHLKDDHKVDMHDGCTF 180
           LGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIQSLVAHLKDDHKVDMHDGCTF
Sbjct: 121 LGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIQSLVAHLKDDHKVDMHDGCTF 180

Query: 181 NHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKKF 240
           NHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKKF
Sbjct: 181 NHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKKF 240

Query: 241 SYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITG 300
           SYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITG
Sbjct: 241 SYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITG 300

Query: 301 RIWKEE 307
           RIWKEE
Sbjct: 301 RIWKEE 306

[Close]

BLAST of Carg12720 vs. NCBI nr
Match: XP_022925198.1 (E3 ubiquitin-protein ligase SINAT2-like [Cucurbita moschata] >XP_022925199.1 E3 ubiquitin-protein ligase SINAT2-like [Cucurbita moschata])

HSP 1 Score: 654.8 bits (1688), Expect = 1.4e-184
Identity = 305/306 (99.67%), Postives = 306/306 (100.00%), Query Frame = 0


Query: 1   MAPGSSTCKKVDSHPSVSGHDIAISKSENNPTTSKASLGLGGKLGVYSTNGVQELLECPV 60
           MAPGSSTCKKVDSHPS+SGHDIAISKSENNPTTSKASLGLGGKLGVYSTNGVQELLECPV
Sbjct: 1   MAPGSSTCKKVDSHPSISGHDIAISKSENNPTTSKASLGLGGKLGVYSTNGVQELLECPV 60

Query: 61  CTNLMYPPIYQCPNGHTLCSNCKIRVSNSCPTCRHELGNIRCLALEKVAESLEIPCRYQN 120
           CTNLMYPPIYQCPNGHTLCSNCKIRVSNSCPTCRHELGNIRCLALEKVAESLEIPCRYQN
Sbjct: 61  CTNLMYPPIYQCPNGHTLCSNCKIRVSNSCPTCRHELGNIRCLALEKVAESLEIPCRYQN 120

Query: 121 LGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIQSLVAHLKDDHKVDMHDGCTF 180
           LGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIQSLVAHLKDDHKVDMHDGCTF
Sbjct: 121 LGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIQSLVAHLKDDHKVDMHDGCTF 180

Query: 181 NHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKKF 240
           NHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKKF
Sbjct: 181 NHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKKF 240

Query: 241 SYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITG 300
           SYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITG
Sbjct: 241 SYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITG 300

Query: 301 RIWKEE 307
           RIWKEE
Sbjct: 301 RIWKEE 306

[Close]

BLAST of Carg12720 vs. NCBI nr
Match: XP_022966403.1 (E3 ubiquitin-protein ligase SINAT2-like [Cucurbita maxima] >XP_022966404.1 E3 ubiquitin-protein ligase SINAT2-like [Cucurbita maxima])

HSP 1 Score: 651.4 bits (1679), Expect = 1.6e-183
Identity = 305/306 (99.67%), Postives = 305/306 (99.67%), Query Frame = 0


Query: 1   MAPGSSTCKKVDSHPSVSGHDIAISKSENNPTTSKASLGLGGKLGVYSTNGVQELLECPV 60
           MAPGSSTCKKVDSH SVSGHDIAISKSENNPTTSKASLGLGGKLGVYSTNGVQELLECPV
Sbjct: 1   MAPGSSTCKKVDSHLSVSGHDIAISKSENNPTTSKASLGLGGKLGVYSTNGVQELLECPV 60

Query: 61  CTNLMYPPIYQCPNGHTLCSNCKIRVSNSCPTCRHELGNIRCLALEKVAESLEIPCRYQN 120
           CTNLMYPPIYQCPNGHTLCSNCKIRVSNSCPTCRHELGNIRCLALEKVAESLEIPCRYQN
Sbjct: 61  CTNLMYPPIYQCPNGHTLCSNCKIRVSNSCPTCRHELGNIRCLALEKVAESLEIPCRYQN 120

Query: 121 LGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIQSLVAHLKDDHKVDMHDGCTF 180
           LGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIQSLVAHLKDDHKVDMHDGCTF
Sbjct: 121 LGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIQSLVAHLKDDHKVDMHDGCTF 180

Query: 181 NHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKKF 240
           NHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKKF
Sbjct: 181 NHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKKF 240

Query: 241 SYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITG 300
           SYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITG
Sbjct: 241 SYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITG 300

Query: 301 RIWKEE 307
           RIWKEE
Sbjct: 301 RIWKEE 306

[Close]

BLAST of Carg12720 vs. NCBI nr
Match: XP_022928730.1 (E3 ubiquitin-protein ligase SINAT2-like isoform X1 [Cucurbita moschata] >XP_022928731.1 E3 ubiquitin-protein ligase SINAT2-like isoform X1 [Cucurbita moschata] >XP_022928732.1 E3 ubiquitin-protein ligase SINAT2-like isoform X1 [Cucurbita moschata] >XP_022928733.1 E3 ubiquitin-protein ligase SINAT2-like isoform X1 [Cucurbita moschata] >XP_022928734.1 E3 ubiquitin-protein ligase SINAT2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 623.6 bits (1607), Expect = 3.5e-175
Identity = 293/307 (95.44%), Postives = 297/307 (96.74%), Query Frame = 0


Query: 1   MAPGSSTCKK-VDSHPSVSGHDIAISKSENNPTTSKASLGLGGKLGVYSTNGVQELLECP 60
           MAPGSSTCK+ VDSHPSVSGHDIA+SKSENN T+SK  LG  GKLGVYSTNGVQELLECP
Sbjct: 3   MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKVLLGSSGKLGVYSTNGVQELLECP 62

Query: 61  VCTNLMYPPIYQCPNGHTLCSNCKIRVSNSCPTCRHELGNIRCLALEKVAESLEIPCRYQ 120
           VCTNLMYPPIYQCPNGHTLCSNCKIRVSN CPTCRHELGNIRCLALEKVAESLEIPCRYQ
Sbjct: 63  VCTNLMYPPIYQCPNGHTLCSNCKIRVSNCCPTCRHELGNIRCLALEKVAESLEIPCRYQ 122

Query: 121 NLGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIQSLVAHLKDDHKVDMHDGCT 180
           NLGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDI SLVAHLKDDHKVDMHDGCT
Sbjct: 123 NLGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIPSLVAHLKDDHKVDMHDGCT 182

Query: 181 FNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKK 240
           FNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLG APVYMAFLRFMG+DNEAKK
Sbjct: 183 FNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGTAPVYMAFLRFMGEDNEAKK 242

Query: 241 FSYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRIT 300
           FSYSLEVG NGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRIT
Sbjct: 243 FSYSLEVGHNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRIT 302

Query: 301 GRIWKEE 307
           GRIWKEE
Sbjct: 303 GRIWKEE 309

[Close]

BLAST of Carg12720 vs. NCBI nr
Match: XP_022967856.1 (E3 ubiquitin-protein ligase SINAT2-like isoform X1 [Cucurbita maxima] >XP_023543585.1 E3 ubiquitin-protein ligase SINAT2-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023543586.1 E3 ubiquitin-protein ligase SINAT2-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023543587.1 E3 ubiquitin-protein ligase SINAT2-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 622.1 bits (1603), Expect = 1.0e-174
Identity = 292/307 (95.11%), Postives = 297/307 (96.74%), Query Frame = 0


Query: 1   MAPGSSTCKK-VDSHPSVSGHDIAISKSENNPTTSKASLGLGGKLGVYSTNGVQELLECP 60
           MAPGSSTCK+ VDSHPSVSGHDIA+SKSENN T+SK  LG  GKLGVYSTNGVQELLECP
Sbjct: 3   MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKVLLGSSGKLGVYSTNGVQELLECP 62

Query: 61  VCTNLMYPPIYQCPNGHTLCSNCKIRVSNSCPTCRHELGNIRCLALEKVAESLEIPCRYQ 120
           VCTNLMYPPIYQCPNGHTLCSNCKIRVSN CPTCRHELGNIRCLALEKVAESLEIPCRYQ
Sbjct: 63  VCTNLMYPPIYQCPNGHTLCSNCKIRVSNCCPTCRHELGNIRCLALEKVAESLEIPCRYQ 122

Query: 121 NLGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIQSLVAHLKDDHKVDMHDGCT 180
           NLGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDI SLVAHLKDDHKVDMHDGCT
Sbjct: 123 NLGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIPSLVAHLKDDHKVDMHDGCT 182

Query: 181 FNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKK 240
           FNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLG APVYMAFLRFMG+DNEAKK
Sbjct: 183 FNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGTAPVYMAFLRFMGEDNEAKK 242

Query: 241 FSYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRIT 300
           FSYSLEVG NGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGER+ELKLRIT
Sbjct: 243 FSYSLEVGHNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERRELKLRIT 302

Query: 301 GRIWKEE 307
           GRIWKEE
Sbjct: 303 GRIWKEE 309

[Close]

BLAST of Carg12720 vs. TAIR10
Match: AT3G58040.1 (seven in absentia of Arabidopsis 2)

HSP 1 Score: 549.7 bits (1415), Expect = 1.2e-156
Identity = 256/309 (82.85%), Postives = 277/309 (89.64%), Query Frame = 0


Query: 1   MAPGSSTCKKV-DSHPSVSGHDIAISKSE--NNPTTSKASLGLGGKLGVYSTNGVQELLE 60
           MAPG S  K+V +S+ +   +++  +K E  NN  T   S G+ GK G++S NGV ELLE
Sbjct: 1   MAPGGSALKEVMESNSTGMDYEVKTAKVEVNNNKPTKPGSAGI-GKYGIHSNNGVYELLE 60

Query: 61  CPVCTNLMYPPIYQCPNGHTLCSNCKIRVSNSCPTCRHELGNIRCLALEKVAESLEIPCR 120
           CPVCTNLMYPPI+QCPNGHTLCSNCK+RV N+CPTCR+ELGNIRCLALEKVAESLE+PCR
Sbjct: 61  CPVCTNLMYPPIHQCPNGHTLCSNCKLRVQNTCPTCRYELGNIRCLALEKVAESLEVPCR 120

Query: 121 YQNLGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIQSLVAHLKDDHKVDMHDG 180
           YQNLGC DIFPYYSKLKHEQHCRFRPY CPYAGSECSVTGDI +LV HLKDDHKVDMHDG
Sbjct: 121 YQNLGCHDIFPYYSKLKHEQHCRFRPYTCPYAGSECSVTGDIPTLVVHLKDDHKVDMHDG 180

Query: 181 CTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEA 240
           CTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGD+NEA
Sbjct: 181 CTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEA 240

Query: 241 KKFSYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLR 300
           KKFSYSLEVG +GRKL WQGIPR IRDSHRKVRDSQDGLII RNLALYFSGG+RQELKLR
Sbjct: 241 KKFSYSLEVGAHGRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGGDRQELKLR 300

Query: 301 ITGRIWKEE 307
           +TGRIWKEE
Sbjct: 301 VTGRIWKEE 308

[Close]

BLAST of Carg12720 vs. TAIR10
Match: AT2G41980.1 (Protein with RING/U-box and TRAF-like domains)

HSP 1 Score: 532.7 bits (1371), Expect = 1.5e-151
Identity = 247/307 (80.46%), Postives = 275/307 (89.58%), Query Frame = 0


Query: 1   MAPGSSTCKK-VDSHPSVSGHDIAISKSENNPTTSKASLGLGGKLGVYSTNGVQELLECP 60
           MAPG S  K+ ++S+ +   +++ ++K E N   +K+  G  GK   +S+NGV ELLECP
Sbjct: 1   MAPGGSALKEALESNSTGVDYEVKMAKVEANSKPTKSGSGSIGKF--HSSNGVYELLECP 60

Query: 61  VCTNLMYPPIYQCPNGHTLCSNCKIRVSNSCPTCRHELGNIRCLALEKVAESLEIPCRYQ 120
           VCTNLMYPPI+QCPNGHTLCS+CK+RV N+CPTCR+ELGNIRCLALEKVAESLE+PCRYQ
Sbjct: 61  VCTNLMYPPIHQCPNGHTLCSSCKLRVQNTCPTCRYELGNIRCLALEKVAESLEVPCRYQ 120

Query: 121 NLGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIQSLVAHLKDDHKVDMHDGCT 180
           NLGCQDIFPYYSKLKHEQHCRFR Y+CPYAGSECSVTGDI +LV HLKDDHKVDMHDGCT
Sbjct: 121 NLGCQDIFPYYSKLKHEQHCRFRSYSCPYAGSECSVTGDIPTLVDHLKDDHKVDMHDGCT 180

Query: 181 FNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKK 240
           FNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGD+NEAKK
Sbjct: 181 FNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEAKK 240

Query: 241 FSYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRIT 300
           FSYSLEVG + RKL WQGIPR IRDSHRKVRDSQDGLII RNLALYFSG +++ELKLR+T
Sbjct: 241 FSYSLEVGAHSRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGSDKEELKLRVT 300

Query: 301 GRIWKEE 307
           GRIWKEE
Sbjct: 301 GRIWKEE 305

[Close]

BLAST of Carg12720 vs. TAIR10
Match: AT3G61790.1 (Protein with RING/U-box and TRAF-like domains)

HSP 1 Score: 468.0 bits (1203), Expect = 4.4e-132
Identity = 208/255 (81.57%), Postives = 231/255 (90.59%), Query Frame = 0


Query: 52  VQELLECPVCTNLMYPPIYQCPNGHTLCSNCKIRVSNSCPTCRHELGNIRCLALEKVAES 111
           V ELLECPVCTN MYPPI+QC NGHTLCS CK RV N CPTCR ELG+IRCLALEKVAES
Sbjct: 57  VHELLECPVCTNSMYPPIHQCHNGHTLCSTCKARVHNRCPTCRQELGDIRCLALEKVAES 116

Query: 112 LEIPCRYQNLGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIQSLVAHLKDDHK 171
           LE+PC++ +LGC +IFPYYSKLKHE  C FRPY+CPYAGSECSVTGDI  LVAHL+DDHK
Sbjct: 117 LELPCKHMSLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSECSVTGDIPFLVAHLRDDHK 176

Query: 172 VDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFM 231
           VDMH GCTFNHRYVKSNP EVENATWMLTVF+CFG+ FCLHFEAFQLGMAPVYMAFLRFM
Sbjct: 177 VDMHSGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFM 236

Query: 232 GDDNEAKKFSYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGER 291
           GD+ EA+ ++YSLEVGG GRKLIW+G PR +RDSHRKVRDS DGLIIQRN+AL+FSGG+R
Sbjct: 237 GDETEARNYNYSLEVGGYGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDR 296

Query: 292 QELKLRITGRIWKEE 307
           +ELKLR+TGRIWKE+
Sbjct: 297 KELKLRVTGRIWKEQ 311

[Close]

BLAST of Carg12720 vs. TAIR10
Match: AT4G27880.1 (Protein with RING/U-box and TRAF-like domains)

HSP 1 Score: 458.0 bits (1177), Expect = 4.6e-129
Identity = 210/305 (68.85%), Postives = 244/305 (80.00%), Query Frame = 0


Query: 5   SSTCKKVDSHPSVSGH---DIAISKSENNPTTSKASLGLGGKLGVYSTNGVQELLECPVC 64
           SST  ++  H + +GH     + +K+      +     + G         V ELLECPVC
Sbjct: 10  SSTGNEI--HQNGNGHQSYQFSSTKTHGGAAAAAVVTNIVGPTATAPATSVYELLECPVC 69

Query: 65  TNLMYPPIYQCPNGHTLCSNCKIRVSNSCPTCRHELGNIRCLALEKVAESLEIPCRYQNL 124
           T  MYPPI+QC NGHTLCS CK+RV N CPTCR ELG+IRCLALEKVAESLE+PC++ NL
Sbjct: 70  TYSMYPPIHQCHNGHTLCSTCKVRVHNRCPTCRQELGDIRCLALEKVAESLELPCKFYNL 129

Query: 125 GCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIQSLVAHLKDDHKVDMHDGCTFN 184
           GC +IFPYYSKLKHE  C FRPY+CPYAGSEC + GDI  LVAHL+DDHKVDMH G TFN
Sbjct: 130 GCPEIFPYYSKLKHESLCNFRPYSCPYAGSECGIVGDIPFLVAHLRDDHKVDMHAGSTFN 189

Query: 185 HRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKKFS 244
           HRYVKSNP EVENATWMLTVF+CFG+ FCLHFEAFQLGM PVYMAFLRFMGD+ +A+ +S
Sbjct: 190 HRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMGPVYMAFLRFMGDEEDARSYS 249

Query: 245 YSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITGR 304
           YSLEVGG+GRKL W+G PR IRDSHRKVRDS DGLIIQRN+AL+FSGG+R+ELKLR+TG+
Sbjct: 250 YSLEVGGSGRKLTWEGTPRSIRDSHRKVRDSNDGLIIQRNMALFFSGGDRKELKLRVTGK 309

Query: 305 IWKEE 307
           IWKE+
Sbjct: 310 IWKEQ 312

[Close]

BLAST of Carg12720 vs. TAIR10
Match: AT5G53360.1 (TRAF-like superfamily protein)

HSP 1 Score: 353.2 bits (905), Expect = 1.6e-97
Identity = 155/204 (75.98%), Postives = 178/204 (87.25%), Query Frame = 0


Query: 103 LALEKVAESLEIPCRYQNLGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIQSL 162
           +ALEKVAESLE+PC+Y NLGC  IFPYYSKLKHE  C FRPY+CPYAGSEC+  GDI  L
Sbjct: 15  IALEKVAESLELPCKYYNLGCLGIFPYYSKLKHESQCNFRPYSCPYAGSECAAVGDITFL 74

Query: 163 VAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAP 222
           VAHL+DDHKVDMH GCTFNHRYVKSNP EVENATWMLTVF CFG+ FCLHFEAFQLGMAP
Sbjct: 75  VAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFQCFGQYFCLHFEAFQLGMAP 134

Query: 223 VYMAFLRFMGDDNEAKKFSYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNL 282
           VYMAFLRFMGD+++A+ ++YSLEVGG+GRK  W+G PR +RDSH       DGLIIQRN+
Sbjct: 135 VYMAFLRFMGDEDDARNYTYSLEVGGSGRKQTWEGTPRSVRDSHXXXXXXXDGLIIQRNM 194

Query: 283 ALYFSGGERQELKLRITGRIWKEE 307
           AL+FSGG+++ELKLR+TGRIWKE+
Sbjct: 195 ALFFSGGDKKELKLRVTGRIWKEQ 218

[Close]

BLAST of Carg12720 vs. Swiss-Prot
Match: sp|Q9M2P4|SINA2_ARATH (E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana OX=3702 GN=SINAT2 PE=1 SV=1)

HSP 1 Score: 549.7 bits (1415), Expect = 2.1e-155
Identity = 256/309 (82.85%), Postives = 277/309 (89.64%), Query Frame = 0


Query: 1   MAPGSSTCKKV-DSHPSVSGHDIAISKSE--NNPTTSKASLGLGGKLGVYSTNGVQELLE 60
           MAPG S  K+V +S+ +   +++  +K E  NN  T   S G+ GK G++S NGV ELLE
Sbjct: 1   MAPGGSALKEVMESNSTGMDYEVKTAKVEVNNNKPTKPGSAGI-GKYGIHSNNGVYELLE 60

Query: 61  CPVCTNLMYPPIYQCPNGHTLCSNCKIRVSNSCPTCRHELGNIRCLALEKVAESLEIPCR 120
           CPVCTNLMYPPI+QCPNGHTLCSNCK+RV N+CPTCR+ELGNIRCLALEKVAESLE+PCR
Sbjct: 61  CPVCTNLMYPPIHQCPNGHTLCSNCKLRVQNTCPTCRYELGNIRCLALEKVAESLEVPCR 120

Query: 121 YQNLGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIQSLVAHLKDDHKVDMHDG 180
           YQNLGC DIFPYYSKLKHEQHCRFRPY CPYAGSECSVTGDI +LV HLKDDHKVDMHDG
Sbjct: 121 YQNLGCHDIFPYYSKLKHEQHCRFRPYTCPYAGSECSVTGDIPTLVVHLKDDHKVDMHDG 180

Query: 181 CTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEA 240
           CTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGD+NEA
Sbjct: 181 CTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEA 240

Query: 241 KKFSYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLR 300
           KKFSYSLEVG +GRKL WQGIPR IRDSHRKVRDSQDGLII RNLALYFSGG+RQELKLR
Sbjct: 241 KKFSYSLEVGAHGRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGGDRQELKLR 300

Query: 301 ITGRIWKEE 307
           +TGRIWKEE
Sbjct: 301 VTGRIWKEE 308

[Close]

BLAST of Carg12720 vs. Swiss-Prot
Match: sp|P93748|SINA1_ARATH (Putative E3 ubiquitin-protein ligase SINAT1 OS=Arabidopsis thaliana OX=3702 GN=SINAT1 PE=1 SV=1)

HSP 1 Score: 532.7 bits (1371), Expect = 2.7e-150
Identity = 247/307 (80.46%), Postives = 275/307 (89.58%), Query Frame = 0


Query: 1   MAPGSSTCKK-VDSHPSVSGHDIAISKSENNPTTSKASLGLGGKLGVYSTNGVQELLECP 60
           MAPG S  K+ ++S+ +   +++ ++K E N   +K+  G  GK   +S+NGV ELLECP
Sbjct: 1   MAPGGSALKEALESNSTGVDYEVKMAKVEANSKPTKSGSGSIGKF--HSSNGVYELLECP 60

Query: 61  VCTNLMYPPIYQCPNGHTLCSNCKIRVSNSCPTCRHELGNIRCLALEKVAESLEIPCRYQ 120
           VCTNLMYPPI+QCPNGHTLCS+CK+RV N+CPTCR+ELGNIRCLALEKVAESLE+PCRYQ
Sbjct: 61  VCTNLMYPPIHQCPNGHTLCSSCKLRVQNTCPTCRYELGNIRCLALEKVAESLEVPCRYQ 120

Query: 121 NLGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIQSLVAHLKDDHKVDMHDGCT 180
           NLGCQDIFPYYSKLKHEQHCRFR Y+CPYAGSECSVTGDI +LV HLKDDHKVDMHDGCT
Sbjct: 121 NLGCQDIFPYYSKLKHEQHCRFRSYSCPYAGSECSVTGDIPTLVDHLKDDHKVDMHDGCT 180

Query: 181 FNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKK 240
           FNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGD+NEAKK
Sbjct: 181 FNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEAKK 240

Query: 241 FSYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRIT 300
           FSYSLEVG + RKL WQGIPR IRDSHRKVRDSQDGLII RNLALYFSG +++ELKLR+T
Sbjct: 241 FSYSLEVGAHSRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGSDKEELKLRVT 300

Query: 301 GRIWKEE 307
           GRIWKEE
Sbjct: 301 GRIWKEE 305

[Close]

BLAST of Carg12720 vs. Swiss-Prot
Match: sp|Q10L91|DIS1_ORYSJ (E3 ubiquitin-protein ligase DIS1 OS=Oryza sativa subsp. japonica OX=39947 GN=DIS1 PE=1 SV=1)

HSP 1 Score: 473.4 bits (1217), Expect = 1.9e-132
Identity = 211/264 (79.92%), Postives = 235/264 (89.02%), Query Frame = 0


Query: 43  KLGVYSTNGVQELLECPVCTNLMYPPIYQCPNGHTLCSNCKIRVSNSCPTCRHELGNIRC 102
           K  V  ++ V+ELLECPVC + MYPPI+QC NGHTLCS CK RV N CPTCRHELGNIRC
Sbjct: 38  KPNVVVSSSVRELLECPVCLSAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRC 97

Query: 103 LALEKVAESLEIPCRYQNLGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIQSL 162
           LALEKVA SLE+PC+YQN GC  I+PYY KLKHE  C++RPY+CPYAGSEC+V GDI  L
Sbjct: 98  LALEKVAASLELPCKYQNFGCVGIYPYYCKLKHESQCQYRPYSCPYAGSECTVAGDIPYL 157

Query: 163 VAHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAP 222
           V HLKDDHKVDMH+GCTFNHRYVKSNPHEVENATWMLTVF+CFG+ FCLHFEAFQLGMAP
Sbjct: 158 VNHLKDDHKVDMHNGCTFNHRYVKSNPHEVENATWMLTVFSCFGQYFCLHFEAFQLGMAP 217

Query: 223 VYMAFLRFMGDDNEAKKFSYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNL 282
           VY+AFLRFMGDD EAK +SYSLEVGG GRK+IWQG+PR IRDSHRKVRDS DGLIIQRN+
Sbjct: 218 VYIAFLRFMGDDLEAKNYSYSLEVGGTGRKMIWQGVPRSIRDSHRKVRDSYDGLIIQRNM 277

Query: 283 ALYFSGGERQELKLRITGRIWKEE 307
           AL+FSGGER+ELKLR+TGRIWKE+
Sbjct: 278 ALFFSGGERKELKLRVTGRIWKEQ 301

[Close]

BLAST of Carg12720 vs. Swiss-Prot
Match: sp|Q84JL3|SINA3_ARATH (E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1)

HSP 1 Score: 468.0 bits (1203), Expect = 8.0e-131
Identity = 208/255 (81.57%), Postives = 231/255 (90.59%), Query Frame = 0


Query: 52  VQELLECPVCTNLMYPPIYQCPNGHTLCSNCKIRVSNSCPTCRHELGNIRCLALEKVAES 111
           V ELLECPVCTN MYPPI+QC NGHTLCS CK RV N CPTCR ELG+IRCLALEKVAES
Sbjct: 57  VHELLECPVCTNSMYPPIHQCHNGHTLCSTCKARVHNRCPTCRQELGDIRCLALEKVAES 116

Query: 112 LEIPCRYQNLGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIQSLVAHLKDDHK 171
           LE+PC++ +LGC +IFPYYSKLKHE  C FRPY+CPYAGSECSVTGDI  LVAHL+DDHK
Sbjct: 117 LELPCKHMSLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSECSVTGDIPFLVAHLRDDHK 176

Query: 172 VDMHDGCTFNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFM 231
           VDMH GCTFNHRYVKSNP EVENATWMLTVF+CFG+ FCLHFEAFQLGMAPVYMAFLRFM
Sbjct: 177 VDMHSGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFM 236

Query: 232 GDDNEAKKFSYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGER 291
           GD+ EA+ ++YSLEVGG GRKLIW+G PR +RDSHRKVRDS DGLIIQRN+AL+FSGG+R
Sbjct: 237 GDETEARNYNYSLEVGGYGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDR 296

Query: 292 QELKLRITGRIWKEE 307
           +ELKLR+TGRIWKE+
Sbjct: 297 KELKLRVTGRIWKEQ 311

[Close]

BLAST of Carg12720 vs. Swiss-Prot
Match: sp|Q9STN8|SINA4_ARATH (E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana OX=3702 GN=SINAT4 PE=1 SV=1)

HSP 1 Score: 458.0 bits (1177), Expect = 8.3e-128
Identity = 210/305 (68.85%), Postives = 244/305 (80.00%), Query Frame = 0


Query: 5   SSTCKKVDSHPSVSGH---DIAISKSENNPTTSKASLGLGGKLGVYSTNGVQELLECPVC 64
           SST  ++  H + +GH     + +K+      +     + G         V ELLECPVC
Sbjct: 10  SSTGNEI--HQNGNGHQSYQFSSTKTHGGAAAAAVVTNIVGPTATAPATSVYELLECPVC 69

Query: 65  TNLMYPPIYQCPNGHTLCSNCKIRVSNSCPTCRHELGNIRCLALEKVAESLEIPCRYQNL 124
           T  MYPPI+QC NGHTLCS CK+RV N CPTCR ELG+IRCLALEKVAESLE+PC++ NL
Sbjct: 70  TYSMYPPIHQCHNGHTLCSTCKVRVHNRCPTCRQELGDIRCLALEKVAESLELPCKFYNL 129

Query: 125 GCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIQSLVAHLKDDHKVDMHDGCTFN 184
           GC +IFPYYSKLKHE  C FRPY+CPYAGSEC + GDI  LVAHL+DDHKVDMH G TFN
Sbjct: 130 GCPEIFPYYSKLKHESLCNFRPYSCPYAGSECGIVGDIPFLVAHLRDDHKVDMHAGSTFN 189

Query: 185 HRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKKFS 244
           HRYVKSNP EVENATWMLTVF+CFG+ FCLHFEAFQLGM PVYMAFLRFMGD+ +A+ +S
Sbjct: 190 HRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMGPVYMAFLRFMGDEEDARSYS 249

Query: 245 YSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITGR 304
           YSLEVGG+GRKL W+G PR IRDSHRKVRDS DGLIIQRN+AL+FSGG+R+ELKLR+TG+
Sbjct: 250 YSLEVGGSGRKLTWEGTPRSIRDSHRKVRDSNDGLIIQRNMALFFSGGDRKELKLRVTGK 309

Query: 305 IWKEE 307
           IWKE+
Sbjct: 310 IWKEQ 312

[Close]

BLAST of Carg12720 vs. TrEMBL
Match: tr|A0A251K3R0|A0A251K3R0_MANES (E3 ubiquitin-protein ligase OS=Manihot esculenta OX=3983 GN=MANES_09G037200 PE=3 SV=1)

HSP 1 Score: 589.7 bits (1519), Expect = 3.7e-165
Identity = 270/307 (87.95%), Postives = 291/307 (94.79%), Query Frame = 0


Query: 1   MAPGSSTCKKV-DSHPSVSGHDIAISKSENNPTTSKASLGLGGKLGVYSTNGVQELLECP 60
           MAPG STCK+V +SHP+V+ ++I  +K+ENN TT+K +LG GGK G+YS NGV ELLECP
Sbjct: 1   MAPGGSTCKEVLESHPTVADYEIGTAKAENNGTTTKGTLGAGGKHGLYSNNGVHELLECP 60

Query: 61  VCTNLMYPPIYQCPNGHTLCSNCKIRVSNSCPTCRHELGNIRCLALEKVAESLEIPCRYQ 120
           VC+NLMYPPI+QCPNGHTLCSNCKIRV N CPTCR++LGNIRCLALEKVAESLE+PC+YQ
Sbjct: 61  VCSNLMYPPIHQCPNGHTLCSNCKIRVHNCCPTCRYDLGNIRCLALEKVAESLELPCKYQ 120

Query: 121 NLGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIQSLVAHLKDDHKVDMHDGCT 180
           +LGC DIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDI SLVAHLKDDHKVDMHDGCT
Sbjct: 121 DLGCHDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIPSLVAHLKDDHKVDMHDGCT 180

Query: 181 FNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKK 240
           FNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKK
Sbjct: 181 FNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKK 240

Query: 241 FSYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRIT 300
           FSYSLEVGGNGRKLIWQGIPR IRDSHRKVRDSQDGLIIQR+LALYFSGG+RQELKLR+T
Sbjct: 241 FSYSLEVGGNGRKLIWQGIPRSIRDSHRKVRDSQDGLIIQRSLALYFSGGDRQELKLRVT 300

Query: 301 GRIWKEE 307
           GRIWKEE
Sbjct: 301 GRIWKEE 307

[Close]

BLAST of Carg12720 vs. TrEMBL
Match: tr|A0A2C9V9T4|A0A2C9V9T4_MANES (E3 ubiquitin-protein ligase OS=Manihot esculenta OX=3983 GN=MANES_09G037200 PE=3 SV=1)

HSP 1 Score: 589.7 bits (1519), Expect = 3.7e-165
Identity = 270/307 (87.95%), Postives = 291/307 (94.79%), Query Frame = 0


Query: 1   MAPGSSTCKKV-DSHPSVSGHDIAISKSENNPTTSKASLGLGGKLGVYSTNGVQELLECP 60
           MAPG STCK+V +SHP+V+ ++I  +K+ENN TT+K +LG GGK G+YS NGV ELLECP
Sbjct: 33  MAPGGSTCKEVLESHPTVADYEIGTAKAENNGTTTKGTLGAGGKHGLYSNNGVHELLECP 92

Query: 61  VCTNLMYPPIYQCPNGHTLCSNCKIRVSNSCPTCRHELGNIRCLALEKVAESLEIPCRYQ 120
           VC+NLMYPPI+QCPNGHTLCSNCKIRV N CPTCR++LGNIRCLALEKVAESLE+PC+YQ
Sbjct: 93  VCSNLMYPPIHQCPNGHTLCSNCKIRVHNCCPTCRYDLGNIRCLALEKVAESLELPCKYQ 152

Query: 121 NLGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIQSLVAHLKDDHKVDMHDGCT 180
           +LGC DIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDI SLVAHLKDDHKVDMHDGCT
Sbjct: 153 DLGCHDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIPSLVAHLKDDHKVDMHDGCT 212

Query: 181 FNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKK 240
           FNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKK
Sbjct: 213 FNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKK 272

Query: 241 FSYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRIT 300
           FSYSLEVGGNGRKLIWQGIPR IRDSHRKVRDSQDGLIIQR+LALYFSGG+RQELKLR+T
Sbjct: 273 FSYSLEVGGNGRKLIWQGIPRSIRDSHRKVRDSQDGLIIQRSLALYFSGGDRQELKLRVT 332

Query: 301 GRIWKEE 307
           GRIWKEE
Sbjct: 333 GRIWKEE 339

[Close]

BLAST of Carg12720 vs. TrEMBL
Match: tr|B9T806|B9T806_RICCO (E3 ubiquitin-protein ligase OS=Ricinus communis OX=3988 GN=RCOM_0446280 PE=3 SV=1)

HSP 1 Score: 577.4 bits (1487), Expect = 1.9e-161
Identity = 265/307 (86.32%), Postives = 287/307 (93.49%), Query Frame = 0


Query: 1   MAPGSSTCKKV-DSHPSVSGHDIAISKSENNPTTSKASLGLGGKLGVYSTNGVQELLECP 60
           MAPG S CK+V +SHP++S ++I  +K+ENN T +K   GLGGK G+YS NGV ELLECP
Sbjct: 1   MAPGGSACKEVLESHPAISDYEIGTAKTENNSTVTK---GLGGKQGLYSNNGVHELLECP 60

Query: 61  VCTNLMYPPIYQCPNGHTLCSNCKIRVSNSCPTCRHELGNIRCLALEKVAESLEIPCRYQ 120
           VCTNLMYPPI+QCPNGHTLCSNCK RV N CPTCR++LGNIRCLALEKVAESLE+PC+YQ
Sbjct: 61  VCTNLMYPPIHQCPNGHTLCSNCKSRVHNCCPTCRYDLGNIRCLALEKVAESLELPCKYQ 120

Query: 121 NLGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIQSLVAHLKDDHKVDMHDGCT 180
           +LGC DIFPYYSKLKHEQHCRFRPY+CPYAGSECS+TGDI +LVAHLKDDHKVDMHDGCT
Sbjct: 121 DLGCHDIFPYYSKLKHEQHCRFRPYSCPYAGSECSITGDIPTLVAHLKDDHKVDMHDGCT 180

Query: 181 FNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKK 240
           FNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQ+GMAPVYMAFLRFMGDDNEAKK
Sbjct: 181 FNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQIGMAPVYMAFLRFMGDDNEAKK 240

Query: 241 FSYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRIT 300
           FSYSLEVGGNGRKLIWQGIPR IRDSHRKVRDSQDGLIIQR+LALYFSGG+RQELKLRIT
Sbjct: 241 FSYSLEVGGNGRKLIWQGIPRSIRDSHRKVRDSQDGLIIQRSLALYFSGGDRQELKLRIT 300

Query: 301 GRIWKEE 307
           GRIWKEE
Sbjct: 301 GRIWKEE 304

[Close]

BLAST of Carg12720 vs. TrEMBL
Match: tr|A0A067JYP2|A0A067JYP2_JATCU (E3 ubiquitin-protein ligase OS=Jatropha curcas OX=180498 GN=JCGZ_25565 PE=3 SV=1)

HSP 1 Score: 576.2 bits (1484), Expect = 4.2e-161
Identity = 265/307 (86.32%), Postives = 284/307 (92.51%), Query Frame = 0


Query: 1   MAPGSSTCKKV-DSHPSVSGHDIAISKSENNPTTSKASLGLGGKLGVYSTNGVQELLECP 60
           MAPG S CK+V +S P++  +DI  +K ENN TT+K +  LGGK GVY+ NGV ELLECP
Sbjct: 1   MAPGGSACKEVLESQPTIPDYDIGTAKVENNITTAKGAPSLGGKHGVYTNNGVHELLECP 60

Query: 61  VCTNLMYPPIYQCPNGHTLCSNCKIRVSNSCPTCRHELGNIRCLALEKVAESLEIPCRYQ 120
           VC+NLMYPPI+QCPNGHTLCSNCKIRV N CPTCR+ELGNIRCLALEKVAESLE+PC+YQ
Sbjct: 61  VCSNLMYPPIHQCPNGHTLCSNCKIRVHNCCPTCRYELGNIRCLALEKVAESLELPCKYQ 120

Query: 121 NLGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIQSLVAHLKDDHKVDMHDGCT 180
           +LGC DIFPYYSKLKHEQHCRFRPY CPYAGSECSVTGDI +LVAHLKDDHKVDMHDGCT
Sbjct: 121 DLGCHDIFPYYSKLKHEQHCRFRPYTCPYAGSECSVTGDIPALVAHLKDDHKVDMHDGCT 180

Query: 181 FNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKK 240
           FNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKK
Sbjct: 181 FNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKK 240

Query: 241 FSYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRIT 300
           FSYSLEVGGNGRKL WQGIPR IRDSHRKVRDSQDGLIIQR+LALYFSGG+RQELKLR+T
Sbjct: 241 FSYSLEVGGNGRKLTWQGIPRSIRDSHRKVRDSQDGLIIQRSLALYFSGGDRQELKLRVT 300

Query: 301 GRIWKEE 307
           GRIWKEE
Sbjct: 301 GRIWKEE 307

[Close]

BLAST of Carg12720 vs. TrEMBL
Match: tr|A0A061EYN3|A0A061EYN3_THECC (E3 ubiquitin-protein ligase OS=Theobroma cacao OX=3641 GN=TCM_024949 PE=3 SV=1)

HSP 1 Score: 575.9 bits (1483), Expect = 5.5e-161
Identity = 265/307 (86.32%), Postives = 285/307 (92.83%), Query Frame = 0


Query: 1   MAPGSSTCKK-VDSHPSVSGHDIAISKSENNPTTSKASLGLGGKLGVYSTNGVQELLECP 60
           MAPG S CK+ V+SHPSV+ +DIA +KSE+N TT K+ + L GK G++S NGV ELLECP
Sbjct: 1   MAPGGSACKEVVESHPSVADYDIATAKSESNTTTMKSPVSLLGKHGIHSNNGVYELLECP 60

Query: 61  VCTNLMYPPIYQCPNGHTLCSNCKIRVSNSCPTCRHELGNIRCLALEKVAESLEIPCRYQ 120
           VCTNLMYPPI+QCPNGHTLCSNCKIRV N CPTC ++LGNIRCLALEKVAESLE+PC+YQ
Sbjct: 61  VCTNLMYPPIHQCPNGHTLCSNCKIRVHNCCPTCCYDLGNIRCLALEKVAESLELPCKYQ 120

Query: 121 NLGCQDIFPYYSKLKHEQHCRFRPYNCPYAGSECSVTGDIQSLVAHLKDDHKVDMHDGCT 180
           NLGC DIFPYYSKLKHEQHCRF PYNCPYAGSECSVTGDI +LVAHLKDDHKVDMHDGCT
Sbjct: 121 NLGCHDIFPYYSKLKHEQHCRFCPYNCPYAGSECSVTGDISTLVAHLKDDHKVDMHDGCT 180

Query: 181 FNHRYVKSNPHEVENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKK 240
           FNHRYVKSNPHEVENATWMLTVFNCFG+QFCLHFEAFQ GMAPVYMAFLRFMGDDNEAKK
Sbjct: 181 FNHRYVKSNPHEVENATWMLTVFNCFGKQFCLHFEAFQFGMAPVYMAFLRFMGDDNEAKK 240

Query: 241 FSYSLEVGGNGRKLIWQGIPRGIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRIT 300
           FSYSLEVG NGR+LIWQGIPR IRDSHRKVRDSQDGLIIQRNLALYFSGG+RQELKLR+T
Sbjct: 241 FSYSLEVGANGRRLIWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGDRQELKLRVT 300

Query: 301 GRIWKEE 307
           GRIWKEE
Sbjct: 301 GRIWKEE 307

The following BLAST results are available for this feature:

BLAST of Carg12720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023518392.1	1.1e-184	100.00	E3 ubiquitin-protein ligase SINAT2-like [Cucurbita pepo subsp. pepo] >XP_0235183...	[more]
XP_022925198.1	1.4e-184	99.67	E3 ubiquitin-protein ligase SINAT2-like [Cucurbita moschata] >XP_022925199.1 E3 ...	[more]
XP_022966403.1	1.6e-183	99.67	E3 ubiquitin-protein ligase SINAT2-like [Cucurbita maxima] >XP_022966404.1 E3 ub...	[more]
XP_022928730.1	3.5e-175	95.44	E3 ubiquitin-protein ligase SINAT2-like isoform X1 [Cucurbita moschata] >XP_0229...	[more]
XP_022967856.1	1.0e-174	95.11	E3 ubiquitin-protein ligase SINAT2-like isoform X1 [Cucurbita maxima] >XP_023543...	[more]

BLAST of Carg12720 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G58040.1	1.2e-156	82.85	seven in absentia of Arabidopsis 2	[more]
AT2G41980.1	1.5e-151	80.46	Protein with RING/U-box and TRAF-like domains	[more]
AT3G61790.1	4.4e-132	81.57	Protein with RING/U-box and TRAF-like domains	[more]
AT4G27880.1	4.6e-129	68.85	Protein with RING/U-box and TRAF-like domains	[more]
AT5G53360.1	1.6e-97	75.98	TRAF-like superfamily protein	[more]

BLAST of Carg12720 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M2P4\|SINA2_ARATH	2.1e-155	82.85	E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana OX=3702 GN=SINAT2 PE=...	[more]
sp\|P93748\|SINA1_ARATH	2.7e-150	80.46	Putative E3 ubiquitin-protein ligase SINAT1 OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
sp\|Q10L91\|DIS1_ORYSJ	1.9e-132	79.92	E3 ubiquitin-protein ligase DIS1 OS=Oryza sativa subsp. japonica OX=39947 GN=DIS...	[more]
sp\|Q84JL3\|SINA3_ARATH	8.0e-131	81.57	E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=...	[more]
sp\|Q9STN8\|SINA4_ARATH	8.3e-128	68.85	E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana OX=3702 GN=SINAT4 PE=...	[more]

BLAST of Carg12720 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A251K3R0\|A0A251K3R0_MANES	3.7e-165	87.95	E3 ubiquitin-protein ligase OS=Manihot esculenta OX=3983 GN=MANES_09G037200 PE=3...	[more]
tr\|A0A2C9V9T4\|A0A2C9V9T4_MANES	3.7e-165	87.95	E3 ubiquitin-protein ligase OS=Manihot esculenta OX=3983 GN=MANES_09G037200 PE=3...	[more]
tr\|B9T806\|B9T806_RICCO	1.9e-161	86.32	E3 ubiquitin-protein ligase OS=Ricinus communis OX=3988 GN=RCOM_0446280 PE=3 SV=...	[more]
tr\|A0A067JYP2\|A0A067JYP2_JATCU	4.2e-161	86.32	E3 ubiquitin-protein ligase OS=Jatropha curcas OX=180498 GN=JCGZ_25565 PE=3 SV=1	[more]
tr\|A0A061EYN3\|A0A061EYN3_THECC	5.5e-161	86.32	E3 ubiquitin-protein ligase OS=Theobroma cacao OX=3641 GN=TCM_024949 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0005515	protein binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006511	ubiquitin-dependent protein catabolic process
GO:0007275	multicellular organism development

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR013010	Znf_SIAH
IPR001841	Znf_RING
IPR004162	SINA-like
IPR018121	7-in-absentia-prot_TRAF-dom
IPR013083	Znf_RING/FYVE/PHD
IPR008974	TRAF-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007275	multicellular organism development
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12720-RA	Carg12720-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008974	TRAF-like	GENE3D	G3DSA:2.60.210.10		coord: 171..300 e-value: 1.9E-32 score: 113.8
IPR008974	TRAF-like	SUPERFAMILY	SSF49599	TRAF domain-like	coord: 111..303
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 26..111 e-value: 4.5E-9 score: 37.9
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 112..166 e-value: 7.1E-19 score: 69.9
IPR018121	Seven-in-absentia protein, TRAF-like domain	PFAM	PF03145	Sina	coord: 100..299 e-value: 4.1E-77 score: 258.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	PANTHER	PTHR10315:SF73	SUBFAMILY NOT NAMED	coord: 19..305
None	No IPR available	CDD	cd16571	RING-HC_SIAHs	coord: 56..94 e-value: 2.03919E-13 score: 62.3022
None	No IPR available	CDD	cd03829	Sina	coord: 172..300 e-value: 4.30489E-61 score: 191.831
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 52..99
IPR004162	E3 ubiquitin-protein ligase SIN-like	PANTHER	PTHR10315	E3 UBIQUITIN PROTEIN LIGASE SIAH	coord: 19..305
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 58..94 score: 9.745
IPR013010	Zinc finger, SIAH-type	PROSITE	PS51081	ZF_SIAH	coord: 111..171 score: 14.569

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12720	Cla008045	Watermelon (97103) v1	carwmB0274
Carg12720	ClCG04G000960	Watermelon (Charleston Gray)	carwcgB0276
Carg12720	CmaCh03G001010	Cucurbita maxima (Rimu)	carcmaB0397
Carg12720	CmaCh07G012900	Cucurbita maxima (Rimu)	carcmaB0398
Carg12720	CmoCh03G001080	Cucurbita moschata (Rifu)	carcmoB0394
Carg12720	Lsi01G019380	Bottle gourd (USVL1VR-Ls)	carlsiB260
Carg12720	Cp4.1LG19g00830	Cucurbita pepo (Zucchini)	carcpeB0400
Carg12720	Cp4.1LG10g11930	Cucurbita pepo (Zucchini)	carcpeB0398
Carg12720	Cla97C04G069120	Watermelon (97103) v2	carwmbB0292
Carg12720	Bhi03G002193	Wax gourd	carwgoB0373

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg12720	Carg25726	Silver-seed gourd	carcarB320

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12720	Cucumber (Gy14) v2	carcgybB0297
Carg12720	Cucumber (Gy14) v1	carcgyB0336
Carg12720	Cucurbita moschata (Rifu)	carcmoB0395
Carg12720	Wild cucumber (PI 183967)	carcpiB0315
Carg12720	Cucumber (Chinese Long) v2	carcuB0309
Carg12720	Cucumber (Chinese Long) v3	carcucB0314
Carg12720	Bottle gourd (USVL1VR-Ls)	carlsiB259
Carg12720	Melon (DHL92) v3.5.1	carmeB0287
Carg12720	Melon (DHL92) v3.6.1	carmedB0298
Carg12720	Watermelon (97103) v1	carwmB0277
Carg12720	Watermelon (97103) v1	carwmB0278