Lsi01G019380 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G019380
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	E3 ubiquitin-protein ligase
Location	chr01 : 24857853 .. 24860366 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAAAAAGTAAAAAGCCAAAGAGAAATTAAATAGAGAGAGAGAAACCATTATAATGGCGGTCCCGCAGCGGTGGTGAAAGCAATTGCACAATTCCAACGATTCATCGATAAACAATCATTGATGTACAACTTTTTGTTCGAGTTCCAAATCCGAGGAGCTATAGGCTTAGCCCAGTTCCGGTCCTTGTGGGATTGAGGTTGTTTTTTCTTTTAATCCCTTTTTCAATTCTGTTTCTGTTTTTGTTTTCAACGTTCGTATCGATTTTTCCACTTTTGAGCCACCCCCAGAATTTATTATTTGAATTCTTGGTCTGTTTCTGCAATTGGGTTCCGAATTCTCATCTGGGGATATGGGTTCTTTGTTTTTTTTGTAAGATTTTCTTCTGTTTTCTTTTTGGTTTTTGTGGGGTTCTGTTTTTCTTTCTGGAGACTTGGAAATGAGGGTCTTGCTATGTTTCGTTCCTTAAGTTTCGTGCAAATTTTGTTTCGTTGTTGAATATTGATTTTCTAATAGGAGAAATGGGTTATCAATTTGTAATCTGTAAAAGGGGAGGAACAGGTTTTTGTATTTGTGCTGCCTGGTCTGGTTTCTTTTCGATTTCAAGCCATTTTTTAAAAGACTTTTCGGTGGATGAATTTAAATTTAATCACATGGCTTTTGGAATTTGACTGTAATAGGGTTGTTTTAATGGCTTCTGAGCCTCTAAAATAATGCCTGTTTGTTTATTATGTTGGTCTGGATGGATTCAAATGAGCCAATTATTTCATTAGGTGATTTATCTCCACAATTTTAAGAACGCGAAATGCAACTTGTTGTAAGACTATGTTATGTTAGTTGTCCTTATCTATAGAATATAATGCTGTCTTATGTCATAGTATGGAGCGAGCTTTTTGTGTTATTTTGGATTTTACGATTGCTTTGGGTTTTTGGAAGGAATCTAGATTGCTTTCTATTTTTCTTATCAAGGTCTACAAATTAAGAGTTCATCAAACTTAATAAGTTTCAAGTTGATCTTTCAGTATTTTGAAGCTCTTTTCCCAATGAATGCCTGGATGTGGATGTTTATGTAGATTTGTTAACCTAGGCTTGTTAAGTTTGGGGTTGGAAGTCTGAGTTTTTATGCTTGGACTATAAAAAAGAATGGGTTGTTAAATCTTGAGGATTGTGTACTTTGTGTTTGGTTTAAGATTTATAATTTATAAACTTCATGTGTAGTATTAGCATAAAAGGTGGGTTTTTGACCTTGAGTTTGTGTACTTTGTAGGATTAGCAAACTTATTGCTTGGAATAAAAAATTCCATTTACCAAACATAGGCCTGACTTCTTTTTAACTCCAAATTATATAAATCTAACCAGGAGCTAGTCACCACATATTGGTTAGGAAAGAATCTAGCAAATGGTCAGCAAGCTTTATGAGATAGAGTTGGACTTCAGGTTATGTAAGTTCCTAACCTTTGGCATATATGTTACCGTTCTCGAGTTCAGATTTCAAGAAAATGAGGGTGTTGCTAAGTCTTGTATGTTATTAAGCATTGTTGATCATATTTAGTTTTTATTATCAGCGGACTTTCATTCAAATTATATCAACAAATCTCCAAACATGAAATGTTTCATTTAATATGGTTATTGACTTGCCCTTTTCTTTTCATTTCTTTTCTTTTCTTTTTTTTTTGGGTCTGGTTTAACAGGATTGAACTCATGGATGAGTGATGCTTAGCATTTGGTGAAGAGTTTCCATTAATACCTTAAAGAAATATATTAAAATTTAATTAAGCCATGGCTCCAGGAAGCAGTACCTGCAAAGAAGTTGTTGATTCTCATCCTTCAGTTTCAGGTCATGACATAGCAATGTCTAAATCAGAGAATAATTCTACATCTTCAAAAAGCCCTCTTGGTTTGAGTGGGAAAATCGGAGTTTATTCAACCAATGGTGTGCAAGAATTGCTTGAGTGCCCTGTCTGCACAAATCTGATGTACCCTCCAATTTACCAGGTATGTACTTTATACCGTGTTTTTTCTCGTGTACTTCTCATTGTAATTTAAGCTATGCTTGGGATTGGAGTGTTTTTGGCATGGAAACATGTGGGTACACTTCTCGCTCAAATTCATTATGTTTGGGAGTAACATAAAAATGCTTTCGGAAAAAGTCAAAAAGCACCTTGAAAGGCTGTTTGAGAAAGCACTTTCTAGTGCTTGTAAAGTAGTATTTTCCTAACTGCACTTGTTGTCAATTGCCTGTGTAAACATGGAGAAGTGATTTTGCAAAAATTACCTTCATTTGTAAAGCATCTTCCATATTGTGCTTTAGATTCATTTCAATGATTGGGTCTAATCGATGAAAGCTGCTGTTAATTTCTTTAAGGTTGAATGGTGTGTGTTAAATATTATTAGCCTAAGAAATTATCATAAGTTGCTTATCTCATTCTTTTGCAGAATTTTATAGAATGTTTCCATAGGAACATGAGGTCCATGCATACTGGAATTGGTGTTTTCACCTTCCTTTGA

mRNA sequence

AAAAAAAAAAAAAAAGTAAAAAGCCAAAGAGAAATTAAATAGAGAGAGAGAAACCATTATAATGGCGGTCCCGCAGCGGTGGTGAAAGCAATTGCACAATTCCAACGATTCATCGATAAACAATCATTGATGTACAACTTTTTGTTCGAGTTCCAAATCCGAGGAGCTATAGGCTTAGCCCAGTTCCGGTCCTTGTGGGATTGAGGAGCTAGTCACCACATATTGGTTAGGAAAGAATCTAGCAAATGGTCAGCAAGCTTTATGAGATAGAGTTGGACTTCAGGTTATGATTGAACTCATGGATGAGTGATGCTTAGCATTTGGTGAAGAGTTTCCATTAATACCTTAAAGAAATATATTAAAATTTAATTAAGCCATGGCTCCAGGAAGCAGTACCTGCAAAGAAGTTGTTGATTCTCATCCTTCAGTTTCAGGTCATGACATAGCAATGTCTAAATCAGAGAATAATTCTACATCTTCAAAAAGCCCTCTTGGTTTGAGTGGGAAAATCGGAGTTTATTCAACCAATGGTGTGCAAGAATTGCTTGAGTGCCCTGTCTGCACAAATCTGATGTACCCTCCAATTTACCAGAATTTTATAGAATGTTTCCATAGGAACATGAGGTCCATGCATACTGGAATTGGTGTTTTCACCTTCCTTTGA

Coding sequence (CDS)

ATGGCTCCAGGAAGCAGTACCTGCAAAGAAGTTGTTGATTCTCATCCTTCAGTTTCAGGTCATGACATAGCAATGTCTAAATCAGAGAATAATTCTACATCTTCAAAAAGCCCTCTTGGTTTGAGTGGGAAAATCGGAGTTTATTCAACCAATGGTGTGCAAGAATTGCTTGAGTGCCCTGTCTGCACAAATCTGATGTACCCTCCAATTTACCAGAATTTTATAGAATGTTTCCATAGGAACATGAGGTCCATGCATACTGGAATTGGTGTTTTCACCTTCCTTTGA

Protein sequence

MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECPVCTNLMYPPIYQNFIECFHRNMRSMHTGIGVFTFL

Homology

[Close]

BLAST of Lsi01G019380 vs. Swiss-Prot
Match: SINA1_ARATH (Putative E3 ubiquitin-protein ligase SINAT1 OS=Arabidopsis thaliana GN=SINAT1 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.0e-13
Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 1


Query: 1  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECP 60
          MAPG S  KE ++S+ +   +++ M+K E NS  +KS  G  GK   +S+NGV ELLECP
Sbjct: 1  MAPGGSALKEALESNSTGVDYEVKMAKVEANSKPTKSGSGSIGKF--HSSNGVYELLECP 60

Query: 61 VCTNLMYPPIYQ 73
          VCTNLMYPPI+Q
Sbjct: 61 VCTNLMYPPIHQ 70

[Close]

BLAST of Lsi01G019380 vs. Swiss-Prot
Match: SINA2_ARATH (E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 7.9e-13
Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = 1


Query: 1  MAPGSSTCKEVVDSHPSVSGHDIAMSKSE-NNSTSSKSPLGLSGKIGVYSTNGVQELLEC 60
          MAPG S  KEV++S+ +   +++  +K E NN+  +K      GK G++S NGV ELLEC
Sbjct: 1  MAPGGSALKEVMESNSTGMDYEVKTAKVEVNNNKPTKPGSAGIGKYGIHSNNGVYELLEC 60

Query: 61 PVCTNLMYPPIYQ 73
          PVCTNLMYPPI+Q
Sbjct: 61 PVCTNLMYPPIHQ 73

[Close]

BLAST of Lsi01G019380 vs. TrEMBL
Match: A0A061EYN3_THECC (E3 ubiquitin-protein ligase OS=Theobroma cacao GN=TCM_024949 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.9e-21
Identity = 51/72 (70.83%), Postives = 62/72 (86.11%), Query Frame = 1


Query: 1  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECP 60
          MAPG S CKEVV+SHPSV+ +DIA +KSE+N+T+ KSP+ L GK G++S NGV ELLECP
Sbjct: 1  MAPGGSACKEVVESHPSVADYDIATAKSESNTTTMKSPVSLLGKHGIHSNNGVYELLECP 60

Query: 61 VCTNLMYPPIYQ 73
          VCTNLMYPPI+Q
Sbjct: 61 VCTNLMYPPIHQ 72

[Close]

BLAST of Lsi01G019380 vs. TrEMBL
Match: B9T806_RICCO (E3 ubiquitin-protein ligase OS=Ricinus communis GN=RCOM_0446280 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 6.7e-19
Identity = 48/72 (66.67%), Postives = 59/72 (81.94%), Query Frame = 1


Query: 1  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECP 60
          MAPG S CKEV++SHP++S ++I  +K+ENNST +K   GL GK G+YS NGV ELLECP
Sbjct: 1  MAPGGSACKEVLESHPAISDYEIGTAKTENNSTVTK---GLGGKQGLYSNNGVHELLECP 60

Query: 61 VCTNLMYPPIYQ 73
          VCTNLMYPPI+Q
Sbjct: 61 VCTNLMYPPIHQ 69

[Close]

BLAST of Lsi01G019380 vs. TrEMBL
Match: Q9XGC3_VITVI (E3 ubiquitin-protein ligase OS=Vitis vinifera GN=VIT_08s0007g06740 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.3e-18
Identity = 47/72 (65.28%), Postives = 59/72 (81.94%), Query Frame = 1


Query: 1  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECP 60
          MAPG ST KEV++SH +V+ +DIAM+K++ N T +K+  GLSGK G+ S NGV ELLECP
Sbjct: 1  MAPGGSTYKEVLESHSTVTDYDIAMTKADTNLTPAKTTAGLSGKKGISSPNGVHELLECP 60

Query: 61 VCTNLMYPPIYQ 73
          VCT+LMYPPIYQ
Sbjct: 61 VCTSLMYPPIYQ 72

[Close]

BLAST of Lsi01G019380 vs. TrEMBL
Match: A0A067JYP2_JATCU (E3 ubiquitin-protein ligase OS=Jatropha curcas GN=JCGZ_25565 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.7e-17
Identity = 44/72 (61.11%), Postives = 55/72 (76.39%), Query Frame = 1


Query: 1  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECP 60
          MAPG S CKEV++S P++  +DI  +K ENN T++K    L GK GVY+ NGV ELLECP
Sbjct: 1  MAPGGSACKEVLESQPTIPDYDIGTAKVENNITTAKGAPSLGGKHGVYTNNGVHELLECP 60

Query: 61 VCTNLMYPPIYQ 73
          VC+NLMYPPI+Q
Sbjct: 61 VCSNLMYPPIHQ 72

[Close]

BLAST of Lsi01G019380 vs. TrEMBL
Match: B9HA10_POPTR (E3 ubiquitin-protein ligase OS=Populus trichocarpa GN=POPTR_0006s208602g PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.3e-17
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 1


Query: 1  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECP 60
          MAPG S  KEV++ H +V+  D+A SKSENN T +K  + L GK GVYS NGV ELLECP
Sbjct: 1  MAPGGSAFKEVLEFHSTVADCDVANSKSENNITPTKGTVVLGGKHGVYSNNGVHELLECP 60

Query: 61 VCTNLMYPPIYQ 73
          VCTNLMYPPI+Q
Sbjct: 61 VCTNLMYPPIHQ 72

[Close]

BLAST of Lsi01G019380 vs. TAIR10
Match: AT2G41980.1 (AT2G41980.1 Protein with RING/U-box and TRAF-like domains)

HSP 1 Score: 74.7 bits (182), Expect = 3.4e-14
Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 1


Query: 1  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECP 60
          MAPG S  KE ++S+ +   +++ M+K E NS  +KS  G  GK   +S+NGV ELLECP
Sbjct: 1  MAPGGSALKEALESNSTGVDYEVKMAKVEANSKPTKSGSGSIGKF--HSSNGVYELLECP 60

Query: 61 VCTNLMYPPIYQ 73
          VCTNLMYPPI+Q
Sbjct: 61 VCTNLMYPPIHQ 70

[Close]

BLAST of Lsi01G019380 vs. TAIR10
Match: AT3G58040.1 (AT3G58040.1 seven in absentia of Arabidopsis 2)

HSP 1 Score: 74.3 bits (181), Expect = 4.4e-14
Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = 1


Query: 1  MAPGSSTCKEVVDSHPSVSGHDIAMSKSE-NNSTSSKSPLGLSGKIGVYSTNGVQELLEC 60
          MAPG S  KEV++S+ +   +++  +K E NN+  +K      GK G++S NGV ELLEC
Sbjct: 1  MAPGGSALKEVMESNSTGMDYEVKTAKVEVNNNKPTKPGSAGIGKYGIHSNNGVYELLEC 60

Query: 61 PVCTNLMYPPIYQ 73
          PVCTNLMYPPI+Q
Sbjct: 61 PVCTNLMYPPIHQ 73

[Close]

BLAST of Lsi01G019380 vs. NCBI nr
Match: gi|590637142|ref|XP_007029035.1| (Seven in absentia of 2 isoform 1 [Theobroma cacao])

HSP 1 Score: 109.8 bits (273), Expect = 2.7e-21
Identity = 51/72 (70.83%), Postives = 62/72 (86.11%), Query Frame = 1


Query: 1  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECP 60
          MAPG S CKEVV+SHPSV+ +DIA +KSE+N+T+ KSP+ L GK G++S NGV ELLECP
Sbjct: 1  MAPGGSACKEVVESHPSVADYDIATAKSESNTTTMKSPVSLLGKHGIHSNNGVYELLECP 60

Query: 61 VCTNLMYPPIYQ 73
          VCTNLMYPPI+Q
Sbjct: 61 VCTNLMYPPIHQ 72

[Close]

BLAST of Lsi01G019380 vs. NCBI nr
Match: gi|255587731|ref|XP_002534375.1| (PREDICTED: E3 ubiquitin-protein ligase SINAT2 [Ricinus communis])

HSP 1 Score: 101.3 bits (251), Expect = 9.6e-19
Identity = 48/72 (66.67%), Postives = 59/72 (81.94%), Query Frame = 1


Query: 1  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECP 60
          MAPG S CKEV++SHP++S ++I  +K+ENNST +K   GL GK G+YS NGV ELLECP
Sbjct: 1  MAPGGSACKEVLESHPAISDYEIGTAKTENNSTVTK---GLGGKQGLYSNNGVHELLECP 60

Query: 61 VCTNLMYPPIYQ 73
          VCTNLMYPPI+Q
Sbjct: 61 VCTNLMYPPIHQ 69

[Close]

BLAST of Lsi01G019380 vs. NCBI nr
Match: gi|526117513|ref|NP_001268043.1| (SINA2p [Vitis vinifera])

HSP 1 Score: 98.6 bits (244), Expect = 6.2e-18
Identity = 47/72 (65.28%), Postives = 59/72 (81.94%), Query Frame = 1


Query: 1  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECP 60
          MAPG ST KEV++SH +V+ +DIAM+K++ N T +K+  GLSGK G+ S NGV ELLECP
Sbjct: 1  MAPGGSTYKEVLESHSTVTDYDIAMTKADTNLTPAKTTAGLSGKKGISSPNGVHELLECP 60

Query: 61 VCTNLMYPPIYQ 73
          VCT+LMYPPIYQ
Sbjct: 61 VCTSLMYPPIYQ 72

[Close]

BLAST of Lsi01G019380 vs. NCBI nr
Match: gi|643710507|gb|KDP24649.1| (hypothetical protein JCGZ_25565 [Jatropha curcas])

HSP 1 Score: 95.5 bits (236), Expect = 5.3e-17
Identity = 44/72 (61.11%), Postives = 55/72 (76.39%), Query Frame = 1


Query: 1  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECP 60
          MAPG S CKEV++S P++  +DI  +K ENN T++K    L GK GVY+ NGV ELLECP
Sbjct: 1  MAPGGSACKEVLESQPTIPDYDIGTAKVENNITTAKGAPSLGGKHGVYTNNGVHELLECP 60

Query: 61 VCTNLMYPPIYQ 73
          VC+NLMYPPI+Q
Sbjct: 61 VCSNLMYPPIHQ 72

[Close]

BLAST of Lsi01G019380 vs. NCBI nr
Match: gi|224088178|ref|XP_002308357.1| (Ubiquitin ligase SINAT2 family protein [Populus trichocarpa])

HSP 1 Score: 94.7 bits (234), Expect = 9.0e-17
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 1


Query: 1  MAPGSSTCKEVVDSHPSVSGHDIAMSKSENNSTSSKSPLGLSGKIGVYSTNGVQELLECP 60
          MAPG S  KEV++ H +V+  D+A SKSENN T +K  + L GK GVYS NGV ELLECP
Sbjct: 1  MAPGGSAFKEVLEFHSTVADCDVANSKSENNITPTKGTVVLGGKHGVYSNNGVHELLECP 60

Query: 61 VCTNLMYPPIYQ 73
          VCTNLMYPPI+Q
Sbjct: 61 VCTNLMYPPIHQ 72

The following BLAST results are available for this feature:

BLAST of Lsi01G019380 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SINA1_ARATH	6.0e-13	54.17	Putative E3 ubiquitin-protein ligase SINAT1 OS=Arabidopsis thaliana GN=SINAT1 PE...	[more]
SINA2_ARATH	7.9e-13	52.05	E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2 PE=1 SV=1	[more]

BLAST of Lsi01G019380 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061EYN3_THECC	1.9e-21	70.83	E3 ubiquitin-protein ligase OS=Theobroma cacao GN=TCM_024949 PE=3 SV=1	[more]
B9T806_RICCO	6.7e-19	66.67	E3 ubiquitin-protein ligase OS=Ricinus communis GN=RCOM_0446280 PE=3 SV=1	[more]
Q9XGC3_VITVI	4.3e-18	65.28	E3 ubiquitin-protein ligase OS=Vitis vinifera GN=VIT_08s0007g06740 PE=2 SV=1	[more]
A0A067JYP2_JATCU	3.7e-17	61.11	E3 ubiquitin-protein ligase OS=Jatropha curcas GN=JCGZ_25565 PE=3 SV=1	[more]
B9HA10_POPTR	6.3e-17	65.28	E3 ubiquitin-protein ligase OS=Populus trichocarpa GN=POPTR_0006s208602g PE=3 SV...	[more]

BLAST of Lsi01G019380 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G41980.1	3.4e-14	54.17	Protein with RING/U-box and TRAF-like domains	[more]
AT3G58040.1	4.4e-14	52.05	seven in absentia of Arabidopsis 2	[more]

BLAST of Lsi01G019380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|590637142\|ref\|XP_007029035.1\|	2.7e-21	70.83	Seven in absentia of 2 isoform 1 [Theobroma cacao]	[more]
gi\|255587731\|ref\|XP_002534375.1\|	9.6e-19	66.67	PREDICTED: E3 ubiquitin-protein ligase SINAT2 [Ricinus communis]	[more]
gi\|526117513\|ref\|NP_001268043.1\|	6.2e-18	65.28	SINA2p [Vitis vinifera]	[more]
gi\|643710507\|gb\|KDP24649.1\|	5.3e-17	61.11	hypothetical protein JCGZ_25565 [Jatropha curcas]	[more]
gi\|224088178\|ref\|XP_002308357.1\|	9.0e-17	65.28	Ubiquitin ligase SINAT2 family protein [Populus trichocarpa]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006915	apoptotic process
biological_process	GO:0007275	multicellular organism development
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process	GO:0042787	protein ubiquitination involved in ubiquitin-dependent protein catabolic process
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G019380.1	Lsi01G019380.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G019380	Cla97C04G069120	Watermelon (97103) v2	lsiwmbB133
Lsi01G019380	Bhi03G002193	Wax gourd	lsiwgoB173
Lsi01G019380	Cp4.1LG10g11930	Cucurbita pepo (Zucchini)	cpelsiB055
Lsi01G019380	Carg12720	Silver-seed gourd	carlsiB260
Lsi01G019380	Carg25726	Silver-seed gourd	carlsiB781

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G019380	Melon (DHL92) v3.6.1	lsimedB159
Lsi01G019380	Melon (DHL92) v3.6.1	lsimedB169
Lsi01G019380	Silver-seed gourd	carlsiB259
Lsi01G019380	Cucumber (Chinese Long) v3	cuclsiB279
Lsi01G019380	Watermelon (97103) v2	lsiwmbB136
Lsi01G019380	Wax gourd	lsiwgoB186
Lsi01G019380	Wax gourd	lsiwgoB188
Lsi01G019380	Cucumber (Gy14) v1	cgylsiB575
Lsi01G019380	Cucurbita maxima (Rimu)	cmalsiB598
Lsi01G019380	Cucurbita maxima (Rimu)	cmalsiB792
Lsi01G019380	Cucurbita moschata (Rifu)	cmolsiB583
Lsi01G019380	Cucurbita moschata (Rifu)	cmolsiB780
Lsi01G019380	Cucurbita pepo (Zucchini)	cpelsiB392
Lsi01G019380	Wild cucumber (PI 183967)	cpilsiB258
Lsi01G019380	Cucumber (Chinese Long) v2	culsiB259
Lsi01G019380	Melon (DHL92) v3.5.1	lsimeB152
Lsi01G019380	Watermelon (Charleston Gray)	lsiwcgB135
Lsi01G019380	Watermelon (97103) v1	lsiwmB153
Lsi01G019380	Cucumber (Gy14) v2	cgyblsiB243