Carg12352 (gene) Silver-seed gourd

Overview
NameCarg12352
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionProtein unc-80 like
LocationCucurbita_argyrosperma_scaffold_074 : 467000 .. 467389 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCCGTCTGCATATCAGAATGCGTCGACAACGTCTGCGTCGTCCCGGGCGGCCGCCCGACCCACGTGAACCTGCAGCGGTGTCCGGAGGAGGAGAACGACTCTGCAGAGAGAGAACGCCGCCGCCCACGGCCGAGAGGGGCTCGCCGACAAATGTATCTGAGGAGCTACACCTTTTCTAGAGAGGATGCCGTCGCCCCTAAGGGTACAACTCAGCACTGCCTTGGGAAGCTCAGGTCATTTCGGAAGCCGGAGGAGATCCGCGAAGGGCTGAGGAAGAGGAGGAGCCGCTGTTTCGCCGTTGCTAGGGCCGCCGCCAAGCAGGGTTCTTCCGGTGGTGCGTTGCTATCCATGTTTCGACGGCTGGTTTGTTGTGGCGGCCGGTAA

mRNA sequence

ATGGCCTCCGTCTGCATATCAGAATGCGTCGACAACGTCTGCGTCGTCCCGGGCGGCCGCCCGACCCACGTGAACCTGCAGCGGTGTCCGGAGGAGGAGAACGACTCTGCAGAGAGAGAACGCCGCCGCCCACGGCCGAGAGGGGCTCGCCGACAAATGTATCTGAGGAGCTACACCTTTTCTAGAGAGGATGCCGTCGCCCCTAAGGGTACAACTCAGCACTGCCTTGGGAAGCTCAGGTCATTTCGGAAGCCGGAGGAGATCCGCGAAGGGCTGAGGAAGAGGAGGAGCCGCTGTTTCGCCGTTGCTAGGGCCGCCGCCAAGCAGGGTTCTTCCGGTGGTGCGTTGCTATCCATGTTTCGACGGCTGGTTTGTTGTGGCGGCCGGTAA

Coding sequence (CDS)

ATGGCCTCCGTCTGCATATCAGAATGCGTCGACAACGTCTGCGTCGTCCCGGGCGGCCGCCCGACCCACGTGAACCTGCAGCGGTGTCCGGAGGAGGAGAACGACTCTGCAGAGAGAGAACGCCGCCGCCCACGGCCGAGAGGGGCTCGCCGACAAATGTATCTGAGGAGCTACACCTTTTCTAGAGAGGATGCCGTCGCCCCTAAGGGTACAACTCAGCACTGCCTTGGGAAGCTCAGGTCATTTCGGAAGCCGGAGGAGATCCGCGAAGGGCTGAGGAAGAGGAGGAGCCGCTGTTTCGCCGTTGCTAGGGCCGCCGCCAAGCAGGGTTCTTCCGGTGGTGCGTTGCTATCCATGTTTCGACGGCTGGTTTGTTGTGGCGGCCGGTAA

Protein sequence

MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDSAERERRRPRPRGARRQMYLRSYTFSREDAVAPKGTTQHCLGKLRSFRKPEEIREGLRKRRSRCFAVARAAAKQGSSGGALLSMFRRLVCCGGR
Homology
[Close]
BLAST of Carg12352 vs. NCBI nr
Match: XP_022949319.1 (uncharacterized protein LOC111452708 [Cucurbita moschata])

HSP 1 Score: 234.6 bits (597), Expect = 1.9e-58
Identity = 128/129 (99.22%), Postives = 128/129 (99.22%), Query Frame = 0 

Query: 1   MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDXXXXXXXXXXXXGARRQMYLRSYTF 60
           MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDXXXXXXXXXXXXGARRQMYLRSYTF
Sbjct: 1   MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDXXXXXXXXXXXXGARRQMYLRSYTF 60

Query: 61  SREDAVAPKGTTQHCLGKLRSFRKPEEIREGLRKRRSRCFAVARAAAKQGSSGGALLSMF 120
           SREDAVAPKGTTQHCLGKLRSFRKPEEIREGLRKRRSRCFAVAR AAKQGSSGGALLSMF
Sbjct: 61  SREDAVAPKGTTQHCLGKLRSFRKPEEIREGLRKRRSRCFAVARTAAKQGSSGGALLSMF 120

Query: 121 RRLVCCGGR 130
           RRLVCCGGR
Sbjct: 121 RRLVCCGGR 129

[Close]
BLAST of Carg12352 vs. NCBI nr
Match: XP_023524571.1 (uncharacterized protein LOC111788468 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 225.7 bits (574), Expect = 8.9e-56
Identity = 125/129 (96.90%), Postives = 126/129 (97.67%), Query Frame = 0 

Query: 1   MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDXXXXXXXXXXXXGARRQMYLRSYTF 60
           MASVCISECVDNVCVVPGGRPTHVNLQR PEEEN XXXXXXXXXXXXGARRQMYLRSYTF
Sbjct: 1   MASVCISECVDNVCVVPGGRPTHVNLQRWPEEENXXXXXXXXXXXXXGARRQMYLRSYTF 60

Query: 61  SREDAVAPKGTTQHCLGKLRSFRKPEEIREGLRKRRSRCFAVARAAAKQGSSGGALLSMF 120
           SREDAVAPKGTTQHCLGKLRSFRKPE+IREGLRKRRSRCFAVARAAAKQ SSGGALLSMF
Sbjct: 61  SREDAVAPKGTTQHCLGKLRSFRKPEDIREGLRKRRSRCFAVARAAAKQASSGGALLSMF 120

Query: 121 RRLVCCGGR 130
           RRLVCCGGR
Sbjct: 121 RRLVCCGGR 129

[Close]
BLAST of Carg12352 vs. NCBI nr
Match: XP_022997982.1 (uncharacterized protein LOC111492773 [Cucurbita maxima])

HSP 1 Score: 186.0 bits (471), Expect = 7.8e-44
Identity = 98/106 (92.45%), Postives = 100/106 (94.34%), Query Frame = 0 

Query: 1   MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDXXXXXXXXXXXXGARRQMYLRSYTF 60
           MASVCISECVDNVCVVPGGRPTHVNL+RCPEEEND    XXXXXXX GARRQMYLRSYTF
Sbjct: 1   MASVCISECVDNVCVVPGGRPTHVNLKRCPEEENDSAEKXXXXXXXRGARRQMYLRSYTF 60

Query: 61  SREDAVAPKGTTQHCLGKLRSFRKPEEIREGLRKRRSRCFAVARAA 107
           SREDAVAP GTTQHCLGKLRSFRKPEEIR+GLRKRRSRCFAVARAA
Sbjct: 61  SREDAVAPVGTTQHCLGKLRSFRKPEEIRQGLRKRRSRCFAVARAA 106

[Close]
BLAST of Carg12352 vs. NCBI nr
Match: XP_023519361.1 (uncharacterized protein LOC111782795 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 135.2 bits (339), Expect = 1.6e-28
Identity = 74/128 (57.81%), Postives = 89/128 (69.53%), Query Frame = 0 

Query: 1   MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDXXXXXXXXXXXXG--ARRQMYLRSY 60
           MASVCISEC+++ C++P GRPT+ +LQR PEEE+                +RRQMYLRSY
Sbjct: 1   MASVCISECINDTCIIPAGRPTYFSLQRWPEEEDGSVEPRRPRLRAADGISRRQMYLRSY 60

Query: 61  TFSREDAVAPKGTTQHCLGKLRSFRKPEEIREGLRKRRSRCFAVARAAAKQGSSGGALLS 120
           TFSRED    + T Q CLGKL+  R+P EIR G   RRSRCFA+ RAAA + SS GALLS
Sbjct: 61  TFSREDTEVHESTAQTCLGKLKRRRRPAEIRGG--GRRSRCFAIVRAAAAKASS-GALLS 120

Query: 121 MFRRLVCC 127
           MFRRL+ C
Sbjct: 121 MFRRLLSC 125

[Close]
BLAST of Carg12352 vs. NCBI nr
Match: XP_022964754.1 (uncharacterized protein LOC111464745 [Cucurbita moschata])

HSP 1 Score: 134.8 bits (338), Expect = 2.1e-28
Identity = 74/128 (57.81%), Postives = 89/128 (69.53%), Query Frame = 0 

Query: 1   MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDXXXXXXXXXXXXG--ARRQMYLRSY 60
           MASVCISEC+++ C++P GRPT+ +LQR PEEE+                +RRQMYLRSY
Sbjct: 1   MASVCISECINDACIIPAGRPTYFSLQRWPEEEDGSVEPRRPRVRAADGISRRQMYLRSY 60

Query: 61  TFSREDAVAPKGTTQHCLGKLRSFRKPEEIREGLRKRRSRCFAVARAAAKQGSSGGALLS 120
           TF RED V  + T Q CLGKL+  R+P EIR G   RRSRCFA+ RAAA + SS GALLS
Sbjct: 61  TFCREDTVVHESTAQTCLGKLKWRRRPAEIRGG--GRRSRCFAIVRAAAAKASS-GALLS 120

Query: 121 MFRRLVCC 127
           MFRRL+ C
Sbjct: 121 MFRRLLSC 125

[Close]
BLAST of Carg12352 vs. TAIR10
Match: AT5G02640.1 (unknown protein)

HSP 1 Score: 51.2 bits (121), Expect = 5.5e-07
Identity = 35/96 (36.46%), Postives = 46/96 (47.92%), Query Frame = 0 

Query: 1  MASVCISECVDNV----CVVPGGRPTHVNLQRCPEEENDXXXXXXXXXXXXGAR------ 60
          M SVCIS C+++       V   R ++VNL + PE + +             AR      
Sbjct: 1  MNSVCISSCINDAHDPRVPVRPVRASYVNLYKWPESDAEFVRSVRRGGGLPAARVVDSIS 60

Query: 61 -RQMYLRSYTFSRED-----AVAPKGTTQHCLGKLR 81
           RQMYLRSYTFSRED          GT   CLG+++
Sbjct: 61 CRQMYLRSYTFSREDDESKSEKVSSGTQTSCLGRVK 96

[Close]
BLAST of Carg12352 vs. TrEMBL
Match: tr|A0A1S3C748|A0A1S3C748_CUCME (uncharacterized protein LOC103497245 OS=Cucumis melo OX=3656 GN=LOC103497245 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 8.9e-28
Identity = 75/129 (58.14%), Postives = 89/129 (68.99%), Query Frame = 0 

Query: 1   MASVCISECVDNVCVVPGGRPTHVNLQRCPEEE--NDXXXXXXXXXXXXGARRQMYLRSY 60
           MASVCISECVDN C+V   +PT+VNLQR  EEE  +              +RRQMYLRSY
Sbjct: 1   MASVCISECVDNACIVSAAQPTYVNLQRWSEEEKWSTERRRPRPRAAEGISRRQMYLRSY 60

Query: 61  TFSREDAVAPKGTTQHCLGKLRSFR-KPEEIREGLRKRRSRCFAVARAAAKQGSSGGALL 120
           TFSRED V P+ TTQ+C GK+R  R +P  IR    +RRSRCFA+ +AAA Q SS GAL+
Sbjct: 61  TFSREDTVVPETTTQNCFGKIRRRRQRPARIRGS--RRRSRCFAMVKAAATQASS-GALV 120

Query: 121 SMFRRLVCC 127
            MFRRL+CC
Sbjct: 121 LMFRRLLCC 126

[Close]
BLAST of Carg12352 vs. TrEMBL
Match: tr|A0A0A0LXY3|A0A0A0LXY3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G497810 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.4e-17
Identity = 49/82 (59.76%), Postives = 56/82 (68.29%), Query Frame = 0 

Query: 1  MASVCISECVDNVCVVPGGRPTHVNLQRCPEEE--NDXXXXXXXXXXXXGARRQMYLRSY 60
          MASVCISECVDN C+V   RPT+VNLQR  EEE  +              +RRQMYLRSY
Sbjct: 1  MASVCISECVDNACIVSAARPTYVNLQRWSEEEKWSTERRRPRPRAADGISRRQMYLRSY 60

Query: 61 TFSREDAVAPKGTTQHCLGKLR 81
          TFSRED V P+ TTQ+C GK+R
Sbjct: 61 TFSREDIVVPETTTQNCFGKIR 82

[Close]
BLAST of Carg12352 vs. TrEMBL
Match: tr|M5W229|M5W229_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G246400 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.5e-06
Identity = 49/143 (34.27%), Postives = 70/143 (48.95%), Query Frame = 0 

Query: 1   MASVCISECVDNV--CVVPGGRPTHVNLQRCPEEENDXXXXXXXXXXXXGAR-------- 60
           M SVCIS CV++     VP  R T+VNL + PE + +            GA+        
Sbjct: 1   MTSVCISNCVNDARDPRVP-MRATYVNLYKWPESDAEFVRSVSSKGRRSGAQQHGHPRVV 60

Query: 61  -----RQMYLRSYTFSREDAVAPKGTTQHCLGKLRS--FRKPEEIREGLRKRRSRCFAVA 120
                RQMYLRSYTFSR++ V  K  TQ C G+++       +   +G RKR ++C  + 
Sbjct: 61  DSISCRQMYLRSYTFSRKETVPEK--TQKCFGRVKEKMVNNKKGKAKGGRKRSNKCLVLR 120

Query: 121 RAAAKQGSSGGALLSMFRRLVCC 127
           +    +  S  AL  +FRR + C
Sbjct: 121 KV---KELSSAALFRIFRRFLSC 137

[Close]
BLAST of Carg12352 vs. TrEMBL
Match: tr|A0A1S3CKF0|A0A1S3CKF0_CUCME (uncharacterized protein LOC103501967 OS=Cucumis melo OX=3656 GN=LOC103501967 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.5e-06
Identity = 47/151 (31.13%), Postives = 70/151 (46.36%), Query Frame = 0 

Query: 1   MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDXXXXXXXXXXXXG------ARRQMY 60
           MASVCIS C+++  +    RPT++NL + PE + +                   + RQMY
Sbjct: 1   MASVCISNCINDAHLPV--RPTYINLYKWPESDAEFIRSVSSKLNRTSRVVDSISCRQMY 60

Query: 61  LRSYTFSREDAVAPKGTTQHCLGKLRSFRK-------------------PEEIREGLRKR 120
           LRSYTFSRE+  AP+  T  C  K+   +K                    E+IR+  R +
Sbjct: 61  LRSYTFSREEEHAPETKTNKCFAKVGMRQKISXXXXXXXXXXXXXXXXXDEKIRKSSRLK 120

Query: 121 RSRCFAVARAAAKQGSSGGALLSMFRRLVCC 127
           +++  + A           AL S+FRRL+ C
Sbjct: 121 KAKEISCA-----------ALTSVFRRLLSC 138

[Close]
BLAST of Carg12352 vs. TrEMBL
Match: tr|A0A2R6PF48|A0A2R6PF48_ACTCH (Protein unc-80 like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc30213 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.3e-06
Identity = 50/140 (35.71%), Postives = 72/140 (51.43%), Query Frame = 0 

Query: 1   MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDXXXXXXXXXXXXG------------ 60
           MAS C S C+++V V P  R T+VNL + PE + +                         
Sbjct: 1   MASACKSNCINDVIVRPPIRATYVNLYKWPESDAEFVRSVSSAGSRRADASSGHPRVVDS 60

Query: 61  -ARRQMYLRSYTFSREDAVAPKGTTQHCLGKLRSFRKPEEIREGLRKRRSR-CFAVARAA 120
            + RQ+YLRSYTFSR+++V  K  T+ CLG++R     E +     +R+SR   +VAR A
Sbjct: 61  ISCRQLYLRSYTFSRKESVPEK--TRKCLGRVR-----ERVVLYRTERKSRGSDSVARRA 120

Query: 121 AKQGSSGGALLSMFRRLVCC 127
            +   S  AL + FRRL+ C
Sbjct: 121 KE--VSCAALSAAFRRLLSC 131

The following BLAST results are available for this feature:
BLAST of Carg12352 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022949319.11.9e-5899.22uncharacterized protein LOC111452708 [Cucurbita moschata][more]
XP_023524571.18.9e-5696.90uncharacterized protein LOC111788468 [Cucurbita pepo subsp. pepo][more]
XP_022997982.17.8e-4492.45uncharacterized protein LOC111492773 [Cucurbita maxima][more]
XP_023519361.11.6e-2857.81uncharacterized protein LOC111782795 [Cucurbita pepo subsp. pepo][more]
XP_022964754.12.1e-2857.81uncharacterized protein LOC111464745 [Cucurbita moschata][more]
BLAST of Carg12352 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G02640.15.5e-0736.46unknown protein[more]
BLAST of Carg12352 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg12352 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C748|A0A1S3C748_CUCME8.9e-2858.14uncharacterized protein LOC103497245 OS=Cucumis melo OX=3656 GN=LOC103497245 PE=... [more]
tr|A0A0A0LXY3|A0A0A0LXY3_CUCSA5.4e-1759.76Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G497810 PE=4 SV=1[more]
tr|M5W229|M5W229_PRUPE1.5e-0634.27Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G246400 PE=4 SV=1[more]
tr|A0A1S3CKF0|A0A1S3CKF0_CUCME2.5e-0631.13uncharacterized protein LOC103501967 OS=Cucumis melo OX=3656 GN=LOC103501967 PE=... [more]
tr|A0A2R6PF48|A0A2R6PF48_ACTCH3.3e-0635.71Protein unc-80 like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Ac... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12352-RACarg12352-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..51
NoneNo IPR availablePANTHERPTHR35304FAMILY NOT NAMEDcoord: 1..127

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg12352Cla008267Watermelon (97103) v1carwmB0440
Carg12352Cla013269Watermelon (97103) v1carwmB0442
Carg12352Csa1G497810Cucumber (Chinese Long) v2carcuB0471
Carg12352MELO3C020681Melon (DHL92) v3.5.1carmeB0449
Carg12352ClCG03G001760Watermelon (Charleston Gray)carwcgB0436
Carg12352ClCG02G020590Watermelon (Charleston Gray)carwcgB0433
Carg12352CSPI06G16610Wild cucumber (PI 183967)carcpiB0480
Carg12352CSPI01G22680Wild cucumber (PI 183967)carcpiB0476
Carg12352Cucsa.213610Cucumber (Gy14) v1carcgyB0512
Carg12352CmaCh01G005800Cucurbita maxima (Rimu)carcmaB0613
Carg12352CmoCh13G001500Cucurbita moschata (Rifu)carcmoB0594
Carg12352Lsi02G013790Bottle gourd (USVL1VR-Ls)carlsiB403
Carg12352Cp4.1LG20g08720Cucurbita pepo (Zucchini)carcpeB0620
Carg12352Cp4.1LG02g13250Cucurbita pepo (Zucchini)carcpeB0622
Carg12352CsGy1G022230Cucumber (Gy14) v2carcgybB0448
Carg12352MELO3C020681.2Melon (DHL92) v3.6.1carmedB0451
Carg12352CsaV3_1G033830Cucumber (Chinese Long) v3carcucB0472
Carg12352Cla97C02G046570Watermelon (97103) v2carwmbB0464
Carg12352Cla97C03G052740Watermelon (97103) v2carwmbB0467
Carg12352Bhi08G000563Wax gourdcarwgoB0535
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg12352Carg20261Silver-seed gourdcarcarB333
Carg12352Carg21022Silver-seed gourdcarcarB447
The following block(s) are covering this gene:
GeneOrganismBlock
Carg12352Wax gourdcarwgoB0529
Carg12352Silver-seed gourdcarcarB332
Carg12352Silver-seed gourdcarcarB353
Carg12352Cucumber (Gy14) v2carcgybB0452
Carg12352Cucurbita maxima (Rimu)carcmaB0610
Carg12352Cucurbita maxima (Rimu)carcmaB0615
Carg12352Cucurbita moschata (Rifu)carcmoB0596
Carg12352Cucurbita moschata (Rifu)carcmoB0598
Carg12352Cucurbita pepo (Zucchini)carcpeB0617
Carg12352Cucurbita pepo (Zucchini)carcpeB0619
Carg12352Cucurbita pepo (Zucchini)carcpeB0624
Carg12352Melon (DHL92) v3.5.1carmeB0446
Carg12352Bottle gourd (USVL1VR-Ls)carlsiB400
Carg12352Bottle gourd (USVL1VR-Ls)carlsiB405
Carg12352Melon (DHL92) v3.6.1carmedB0448
Carg12352Watermelon (Charleston Gray)carwcgB0435
Carg12352Watermelon (97103) v1carwmB0441
Carg12352Watermelon (97103) v1carwmB0444