CmoCh13G001500 (gene) Cucurbita moschata (Rifu)

NameCmoCh13G001500
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionBnaCnng03350D protein
LocationCmo_Chr13 : 928438 .. 928839 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCCGTCTGCATATCCGAATGCATCAACGACGCCTGTATTATCCCCGCCGGCCGGCCGACGTATTTCAGCTTGCAGCGGTGGCCGGAGGAGGAGGATGGGTCTGTAGAGCCCCGTCGGCCACGGGTGAGAGCGGCGGACGGGATCTCTCGCCGGCAAATGTACTTGAGAAGCTACACCTTCTGCAGGGAGGACACCGTCGTCCATGAGAGTACAGCACAGACCTGCCTTGGGAAGCTCAAGTGGCGACGGAGGCCGGCAGAGATCCGCGGCGGCGGAAGGAGGAGCCGCTGTTTCGCCATCGTGAGGGCCGCCGCTGCGAAGGCTTCTTCCGGCGCCTTGCTCTCCATGTTCCGGCGGTTGCTTTCTTGCGTGGCGAAAGTTGACGGTCGTAAGTGA

mRNA sequence

ATGGCCTCCGTCTGCATATCCGAATGCATCAACGACGCCTGTATTATCCCCGCCGGCCGGCCGACGTATTTCAGCTTGCAGCGGTGGCCGGAGGAGGAGGATGGGTCTGTAGAGCCCCGTCGGCCACGGGTGAGAGCGGCGGACGGGATCTCTCGCCGGCAAATGTACTTGAGAAGCTACACCTTCTGCAGGGAGGACACCGTCGTCCATGAGAGTACAGCACAGACCTGCCTTGGGAAGCTCAAGTGGCGACGGAGGCCGGCAGAGATCCGCGGCGGCGGAAGGAGGAGCCGCTGTTTCGCCATCGTGAGGGCCGCCGCTGCGAAGGCTTCTTCCGGCGCCTTGCTCTCCATGTTCCGGCGGTTGCTTTCTTGCGTGGCGAAAGTTGACGGTCGTAAGTGA

Coding sequence (CDS)

ATGGCCTCCGTCTGCATATCCGAATGCATCAACGACGCCTGTATTATCCCCGCCGGCCGGCCGACGTATTTCAGCTTGCAGCGGTGGCCGGAGGAGGAGGATGGGTCTGTAGAGCCCCGTCGGCCACGGGTGAGAGCGGCGGACGGGATCTCTCGCCGGCAAATGTACTTGAGAAGCTACACCTTCTGCAGGGAGGACACCGTCGTCCATGAGAGTACAGCACAGACCTGCCTTGGGAAGCTCAAGTGGCGACGGAGGCCGGCAGAGATCCGCGGCGGCGGAAGGAGGAGCCGCTGTTTCGCCATCGTGAGGGCCGCCGCTGCGAAGGCTTCTTCCGGCGCCTTGCTCTCCATGTTCCGGCGGTTGCTTTCTTGCGTGGCGAAAGTTGACGGTCGTAAGTGA
BLAST of CmoCh13G001500 vs. TrEMBL
Match: A0A0A0LXY3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G497810 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.5e-45
Identity = 97/134 (72.39%), Postives = 111/134 (82.84%), Query Frame = 1

Query: 1   MASVCISECINDACIIPAGRPTYFSLQRWPEEEDGSVEPRRPRVRAADGISRRQMYLRSY 60
           MASVCISEC+++ACI+ A RPTY +LQRW EEE  S E RRPR RAADGISRRQMYLRSY
Sbjct: 1   MASVCISECVDNACIVSAARPTYVNLQRWSEEEKWSTERRRPRPRAADGISRRQMYLRSY 60

Query: 61  TFCREDTVVHESTAQTCLGKLKWRRR-PAEIRGGGRRSRCFAIVRAAAAKASSGALLSMF 120
           TF RED VV E+T Q C GK++ RRR PA IRGG RRSRC A+V+AAA++ SSGALL +F
Sbjct: 61  TFSREDIVVPETTTQNCFGKIRRRRRKPATIRGGRRRSRCLAMVKAAASQVSSGALLFLF 120

Query: 121 RRLLSCVAKVDGRK 134
           RRLL CVAKVDGR+
Sbjct: 121 RRLLCCVAKVDGRR 134

BLAST of CmoCh13G001500 vs. TrEMBL
Match: M1CZV0_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030480 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.7e-16
Identity = 60/147 (40.82%), Postives = 81/147 (55.10%), Query Frame = 1

Query: 1   MASVCISECIND---ACIIPAGRPTYFSLQRWPEEEDGSVEPRRPRV------------- 60
           MAS CIS C+ND   A  +P  R TY +L +WPE +   ++    R+             
Sbjct: 1   MASACISSCVNDVVAARSVPV-RATYINLYKWPESDVEFIKSVSSRMNSNNNNNNNIYAK 60

Query: 61  -RAADGISRRQMYLRSYTFCREDTVVHESTAQTCLGKLKWRRRPAEIRGGGRRSRCFAIV 120
            +  D IS RQ+YLRSYTF RE+  V+++ +  C G+ K  R+ +   GGGRR +C   +
Sbjct: 61  PKVVDSISCRQLYLRSYTFSREEERVNDTASMRCYGRKKKSRKSS---GGGRRRKCNKGI 120

Query: 121 RAAAAKASSGALLSMFRRLLSCVAKVD 131
           R  A   S  AL S+FRRLLSC  KVD
Sbjct: 121 R-RAKDISCAALASIFRRLLSCTVKVD 142

BLAST of CmoCh13G001500 vs. TrEMBL
Match: A0A0A0KET2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G302120 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.7e-15
Identity = 64/144 (44.44%), Postives = 80/144 (55.56%), Query Frame = 1

Query: 1   MASVCISECINDACIIPAGRPTYFSLQRWPEEEDG---SVEPRRPRV-RAADGISRRQMY 60
           MASVCIS CINDA + P  RPTY +L +WPE +     SV  +  R  R  D IS RQMY
Sbjct: 1   MASVCISNCINDARL-PV-RPTYINLYKWPESDAEFIRSVSSKLNRTSRVVDSISCRQMY 60

Query: 61  LRSYTFCREDTVVHESTAQTCLGKLKWRRR----------PAEIRGGGRRSRCFAIVRAA 120
           LRSYTF RE+    E+    C  K+  R+R           +E   G  + R  + ++  
Sbjct: 61  LRSYTFSREEEHAPETKTNKCFAKVGMRQRISRRKKKKTAASESSDGDEKIRKSSRLK-K 120

Query: 121 AAKASSGALLSMFRRLLSCVAKVD 131
           A + S  AL S+FRRLLSC AKVD
Sbjct: 121 AKEISCAALTSVFRRLLSCTAKVD 141

BLAST of CmoCh13G001500 vs. TrEMBL
Match: A0A061GYC9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_041937 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.1e-14
Identity = 64/145 (44.14%), Postives = 78/145 (53.79%), Query Frame = 1

Query: 1   MASVCISECINDACIIPAGRPTYFSLQRWPEEEDGSV-----EPRR-----PRVRAADGI 60
           MAS CIS CIND  + P  RPTY +L +WPE +   V     E RR        R  D I
Sbjct: 1   MASTCISNCINDTRV-PV-RPTYVNLYKWPESDAEFVRSLSSEGRRGGGCHAHPRVVDSI 60

Query: 61  SRRQMYLRSYTFCREDTVVHESTAQTCLG-----KLKWRRRPAEIRGGGRRSRCFAIVRA 120
           S RQMYLRSYTF R +T   E     C G     K+K  RR  + +   ++ +C  + R 
Sbjct: 61  SCRQMYLRSYTFHRNET---EPEKTKCFGRAKKEKVKSPRRKRKSKTVAKKKKCMVLRR- 120

Query: 121 AAAKASSGALLSMFRRLLSCVAKVD 131
            A + S  ALL+MFRRLLSC  KVD
Sbjct: 121 -AKEVSCAALLAMFRRLLSCTTKVD 138

BLAST of CmoCh13G001500 vs. TrEMBL
Match: M5W229_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020278mg PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.0e-14
Identity = 60/148 (40.54%), Postives = 82/148 (55.41%), Query Frame = 1

Query: 1   MASVCISECINDACI--IPAGRPTYFSLQRWPEEE-------------DGSVEPRRPRVR 60
           M SVCIS C+NDA    +P  R TY +L +WPE +              G+ +   PRV 
Sbjct: 1   MTSVCISNCVNDARDPRVPM-RATYVNLYKWPESDAEFVRSVSSKGRRSGAQQHGHPRV- 60

Query: 61  AADGISRRQMYLRSYTFCREDTVVHESTAQTCLGKLKWR---RRPAEIRGGGRRSRCFAI 120
             D IS RQMYLRSYTF R++TV  ++  Q C G++K +    +  + +GG +RS    +
Sbjct: 61  -VDSISCRQMYLRSYTFSRKETVPEKT--QKCFGRVKEKMVNNKKGKAKGGRKRSNKCLV 120

Query: 121 VRAAAAKASSGALLSMFRRLLSCVAKVD 131
           +R    + SS AL  +FRR LSC A VD
Sbjct: 121 LR-KVKELSSAALFRIFRRFLSCSASVD 142

BLAST of CmoCh13G001500 vs. TAIR10
Match: AT5G02640.1 (AT5G02640.1 unknown protein)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-15
Identity = 61/156 (39.10%), Postives = 75/156 (48.08%), Query Frame = 1

Query: 1   MASVCISECINDA----CIIPAGRPTYFSLQRWPEEEDGSVEPRR-----PRVRAADGIS 60
           M SVCIS CINDA      +   R +Y +L +WPE +   V   R     P  R  D IS
Sbjct: 1   MNSVCISSCINDAHDPRVPVRPVRASYVNLYKWPESDAEFVRSVRRGGGLPAARVVDSIS 60

Query: 61  RRQMYLRSYTFCRED-----TVVHESTAQTCLGKLKW----RRRPAEIRG--------GG 120
            RQMYLRSYTF RED       V   T  +CLG++K     RR+  E  G          
Sbjct: 61  CRQMYLRSYTFSREDDESKSEKVSSGTQTSCLGRVKGTASSRRKSKEENGIIIVESTKPR 120

Query: 121 RRSRCFAIVRAAAAKASSGALLSMFRRLLSCVAKVD 131
           RR     + R    + +   +L +FRRLLSC A VD
Sbjct: 121 RRGEKRRVSRKNKQEQACSVILRIFRRLLSCAATVD 156

BLAST of CmoCh13G001500 vs. TAIR10
Match: AT3G46300.1 (AT3G46300.1 unknown protein)

HSP 1 Score: 50.4 bits (119), Expect = 9.6e-07
Identity = 44/138 (31.88%), Postives = 61/138 (44.20%), Query Frame = 1

Query: 1   MASVCISECIN----DACIIPAGRPTYFSLQRWPEEEDGSV-----EPRRPRVRAADGIS 60
           MAS CI +C+N      C+ P    TY +L +WP  E   V     +  + R    D IS
Sbjct: 1   MASKCIDDCVNIKRDSICVRPV--MTYANLYKWPMAEAEFVRSINHDGSQHRTTVVDSIS 60

Query: 61  RRQMYLRSYTFCREDTVVHESTAQTCLGKLKWRRRPAEI--RGGGRRSRCFAIVRAAAAK 120
            RQMYLRSYTF  E+   +E       G+   RR        GGGR+      +R     
Sbjct: 61  CRQMYLRSYTFSTEE---NEEDGDGGDGEAVTRRHNQSCFRGGGGRKKAAKNAMRNNKTW 120

Query: 121 ASSGALLSMFRRLLSCVA 128
           +    +  + R+ LSC +
Sbjct: 121 SCRTFVFRLVRKCLSCAS 133

BLAST of CmoCh13G001500 vs. TAIR10
Match: AT3G46310.1 (AT3G46310.1 unknown protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.6e-06
Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 1

Query: 1  MASVCISECIN---DACIIPAGRPTYFSLQRWPEEE---------DGSVEPRRPRVRAAD 60
          MAS CI +C+N   +A  +  GR T+  + +WP  E         DGS  PRR    A +
Sbjct: 1  MASKCIGDCVNIKNNAICVRPGR-THAKIHKWPMAEVEFVQSISQDGS--PRR--TTAVE 60

Query: 61 GISRRQMYLRSYTFCRED 67
           +S RQMYLRSYTF R++
Sbjct: 61 SLSCRQMYLRSYTFSRKE 73

BLAST of CmoCh13G001500 vs. NCBI nr
Match: gi|778665185|ref|XP_011648508.1| (PREDICTED: uncharacterized protein LOC105434501 [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 2.2e-45
Identity = 97/134 (72.39%), Postives = 111/134 (82.84%), Query Frame = 1

Query: 1   MASVCISECINDACIIPAGRPTYFSLQRWPEEEDGSVEPRRPRVRAADGISRRQMYLRSY 60
           MASVCISEC+++ACI+ A RPTY +LQRW EEE  S E RRPR RAADGISRRQMYLRSY
Sbjct: 1   MASVCISECVDNACIVSAARPTYVNLQRWSEEEKWSTERRRPRPRAADGISRRQMYLRSY 60

Query: 61  TFCREDTVVHESTAQTCLGKLKWRRR-PAEIRGGGRRSRCFAIVRAAAAKASSGALLSMF 120
           TF RED VV E+T Q C GK++ RRR PA IRGG RRSRC A+V+AAA++ SSGALL +F
Sbjct: 61  TFSREDIVVPETTTQNCFGKIRRRRRKPATIRGGRRRSRCLAMVKAAASQVSSGALLFLF 120

Query: 121 RRLLSCVAKVDGRK 134
           RRLL CVAKVDGR+
Sbjct: 121 RRLLCCVAKVDGRR 134

BLAST of CmoCh13G001500 vs. NCBI nr
Match: gi|659115478|ref|XP_008457578.1| (PREDICTED: uncharacterized protein LOC103497245 [Cucumis melo])

HSP 1 Score: 190.3 bits (482), Expect = 2.2e-45
Identity = 97/133 (72.93%), Postives = 111/133 (83.46%), Query Frame = 1

Query: 1   MASVCISECINDACIIPAGRPTYFSLQRWPEEEDGSVEPRRPRVRAADGISRRQMYLRSY 60
           MASVCISEC+++ACI+ A +PTY +LQRW EEE  S E RRPR RAA+GISRRQMYLRSY
Sbjct: 1   MASVCISECVDNACIVSAAQPTYVNLQRWSEEEKWSTERRRPRPRAAEGISRRQMYLRSY 60

Query: 61  TFCREDTVVHESTAQTCLGKLKWRR-RPAEIRGGGRRSRCFAIVRAAAAKASSGALLSMF 120
           TF REDTVV E+T Q C GK++ RR RPA IRG  RRSRCFA+V+AAA +ASSGAL+ MF
Sbjct: 61  TFSREDTVVPETTTQNCFGKIRRRRQRPARIRGSRRRSRCFAMVKAAATQASSGALVLMF 120

Query: 121 RRLLSCVAKVDGR 133
           RRLL CVAKVDGR
Sbjct: 121 RRLLCCVAKVDGR 133

BLAST of CmoCh13G001500 vs. NCBI nr
Match: gi|697093552|ref|XP_009614493.1| (PREDICTED: uncharacterized protein LOC104107382 [Nicotiana tomentosiformis])

HSP 1 Score: 90.1 bits (222), Expect = 3.1e-15
Identity = 67/162 (41.36%), Postives = 82/162 (50.62%), Query Frame = 1

Query: 1   MASVCISECINDACIIPAGRPTYFSLQRWPEEE----------------DGSVEPRRPRV 60
           MAS CIS C+ND    P  R TY +L +WPE +                DGS+   +P+ 
Sbjct: 1   MASACISTCVNDIARAPV-RATYINLYKWPESDAEFIKSVSKRMNHVNTDGSIN-HQPKP 60

Query: 61  RAADGISRRQMYLRSYTFCREDTVVHESTAQTCLGKLK------WRRRPAEIR------- 120
           +  D IS RQ+YLRSYTF RED  V+E T   C G++K       RRR  + R       
Sbjct: 61  KVVDSISCRQLYLRSYTFSREDN-VNEKTVLNCYGRVKDGVGGGGRRRKKKARNIAGSNN 120

Query: 121 -GGGRRS--RCFAIVRAAAAKASSGALLSMFRRLLSCVAKVD 131
             GGRRS  R        A + S  AL S+FRRLLSC  KVD
Sbjct: 121 SSGGRRSSRRKRKAGFRRAKEISCAALASIFRRLLSCTTKVD 159

BLAST of CmoCh13G001500 vs. NCBI nr
Match: gi|449461017|ref|XP_004148240.1| (PREDICTED: uncharacterized protein LOC101218723 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 5.3e-15
Identity = 64/144 (44.44%), Postives = 80/144 (55.56%), Query Frame = 1

Query: 1   MASVCISECINDACIIPAGRPTYFSLQRWPEEEDG---SVEPRRPRV-RAADGISRRQMY 60
           MASVCIS CINDA + P  RPTY +L +WPE +     SV  +  R  R  D IS RQMY
Sbjct: 1   MASVCISNCINDARL-PV-RPTYINLYKWPESDAEFIRSVSSKLNRTSRVVDSISCRQMY 60

Query: 61  LRSYTFCREDTVVHESTAQTCLGKLKWRRR----------PAEIRGGGRRSRCFAIVRAA 120
           LRSYTF RE+    E+    C  K+  R+R           +E   G  + R  + ++  
Sbjct: 61  LRSYTFSREEEHAPETKTNKCFAKVGMRQRISRRKKKKTAASESSDGDEKIRKSSRLK-K 120

Query: 121 AAKASSGALLSMFRRLLSCVAKVD 131
           A + S  AL S+FRRLLSC AKVD
Sbjct: 121 AKEISCAALTSVFRRLLSCTAKVD 141

BLAST of CmoCh13G001500 vs. NCBI nr
Match: gi|659127952|ref|XP_008463974.1| (PREDICTED: uncharacterized protein LOC103501967 [Cucumis melo])

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-14
Identity = 64/145 (44.14%), Postives = 77/145 (53.10%), Query Frame = 1

Query: 1   MASVCISECINDACIIPAGRPTYFSLQRWPEEEDG---SVEPRRPRV-RAADGISRRQMY 60
           MASVCIS CINDA + P  RPTY +L +WPE +     SV  +  R  R  D IS RQMY
Sbjct: 1   MASVCISNCINDAHL-PV-RPTYINLYKWPESDAEFIRSVSSKLNRTSRVVDSISCRQMY 60

Query: 61  LRSYTFCREDTVVHESTAQTCLGKLKWRRR-----------PAEIRGGGRRSRCFAIVRA 120
           LRSYTF RE+    E+    C  K+  R++            AE  G G      +    
Sbjct: 61  LRSYTFSREEEHAPETKTNKCFAKVGMRQKISRRKKKKAAASAEESGDGDEKIRKSSRLK 120

Query: 121 AAAKASSGALLSMFRRLLSCVAKVD 131
            A + S  AL S+FRRLLSC AKVD
Sbjct: 121 KAKEISCAALTSVFRRLLSCTAKVD 143

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LXY3_CUCSA1.5e-4572.39Uncharacterized protein OS=Cucumis sativus GN=Csa_1G497810 PE=4 SV=1[more]
M1CZV0_SOLTU5.7e-1640.82Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030480 PE=4 SV=1[more]
A0A0A0KET2_CUCSA3.7e-1544.44Uncharacterized protein OS=Cucumis sativus GN=Csa_6G302120 PE=4 SV=1[more]
A0A061GYC9_THECC1.1e-1444.14Uncharacterized protein OS=Theobroma cacao GN=TCM_041937 PE=4 SV=1[more]
M5W229_PRUPE7.0e-1440.54Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020278mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G02640.11.5e-1539.10 unknown protein[more]
AT3G46300.19.6e-0731.88 unknown protein[more]
AT3G46310.11.6e-0642.31 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778665185|ref|XP_011648508.1|2.2e-4572.39PREDICTED: uncharacterized protein LOC105434501 [Cucumis sativus][more]
gi|659115478|ref|XP_008457578.1|2.2e-4572.93PREDICTED: uncharacterized protein LOC103497245 [Cucumis melo][more]
gi|697093552|ref|XP_009614493.1|3.1e-1541.36PREDICTED: uncharacterized protein LOC104107382 [Nicotiana tomentosiformis][more]
gi|449461017|ref|XP_004148240.1|5.3e-1544.44PREDICTED: uncharacterized protein LOC101218723 [Cucumis sativus][more]
gi|659127952|ref|XP_008463974.1|1.2e-1444.14PREDICTED: uncharacterized protein LOC103501967 [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G001500.1CmoCh13G001500.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35304FAMILY NOT NAMEDcoord: 2..130
score: 9.6

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh13G001500CmoCh02G008470Cucurbita moschata (Rifu)cmocmoB180