CsaV3_1G033830 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G033830
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionProtein unc-80 like
Locationchr1 : 20942164 .. 20942716 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCCGTCTGCATATCCGAATGCGTCGACAACGCCTGCATCGTCTCTGCTGCCCGGCCGACGTACGTCAACCTGCAGCGGTGGTCGGAGGAGGAAAAGTGGTCTACAGAGCGCCGCCGTCCAAGGCCGAGAGCGGCTGACGGAATCTCTCGCCGGCAAATGTACTTGCGGAGTTACACCTTCTCTAGAGAGGACATCGTTGTCCCTGAGACTACAACTCAGAATTGCTTTGGGAAGATCAGGCGGCGGCGCCGGAAGCCAGCGACGATTCGCGGCGGTCGTAGGAGGAGCCGATGTTTGGCCATGGTGAAGGCCGCCGCCAGTCAGGTTTCTTCCGGCGCCTTGCTCTTCTTGTTCCGAAGGTTGCTTTGTTGCGTCGCGAAAGTCGACGGTCGTCGCTCACGGCCGTAAGTGTTTGTGAATTTTGTGAAATCAAAGGTTTCTTTTTTCTTTTTTTTGTCTTCTTTTCAATGAAATAGGCAAATATGAAATAAAGGTAAAGGAAACATAAAATTACAGTCCGTGGAGGGGCACCATGATCACCATCTAG

mRNA sequence

ATGGCCTCCGTCTGCATATCCGAATGCGTCGACAACGCCTGCATCGTCTCTGCTGCCCGGCCGACGTACGTCAACCTGCAGCGGTGGTCGGAGGAGGAAAAGTGGTCTACAGAGCGCCGCCGTCCAAGGCCGAGAGCGGCTGACGGAATCTCTCGCCGGCAAATGTACTTGCGGAGTTACACCTTCTCTAGAGAGGACATCGTTGTCCCTGAGACTACAACTCAGAATTGCTTTGGGAAGATCAGGCGGCGGCGCCGGAAGCCAGCGACGATTCGCGGCGGTCGTAGGAGGAGCCGATGTTTGGCCATGGTGAAGGCCGCCGCCAGTCAGGTTTCTTCCGGCGCCTTGCTCTTCTTGTTCCGAAGGTTGCTTTGTTGCGTCGCGAAAGTCGACGGTCGTCGCTCACGGCCTCCGTGGAGGGGCACCATGATCACCATCTAG

Coding sequence (CDS)

ATGGCCTCCGTCTGCATATCCGAATGCGTCGACAACGCCTGCATCGTCTCTGCTGCCCGGCCGACGTACGTCAACCTGCAGCGGTGGTCGGAGGAGGAAAAGTGGTCTACAGAGCGCCGCCGTCCAAGGCCGAGAGCGGCTGACGGAATCTCTCGCCGGCAAATGTACTTGCGGAGTTACACCTTCTCTAGAGAGGACATCGTTGTCCCTGAGACTACAACTCAGAATTGCTTTGGGAAGATCAGGCGGCGGCGCCGGAAGCCAGCGACGATTCGCGGCGGTCGTAGGAGGAGCCGATGTTTGGCCATGGTGAAGGCCGCCGCCAGTCAGGTTTCTTCCGGCGCCTTGCTCTTCTTGTTCCGAAGGTTGCTTTGTTGCGTCGCGAAAGTCGACGGTCGTCGCTCACGGCCTCCGTGGAGGGGCACCATGATCACCATCTAG

Protein sequence

MASVCISECVDNACIVSAARPTYVNLQRWSEEEKWSTERRRPRPRAADGISRRQMYLRSYTFSREDIVVPETTTQNCFGKIRRRRRKPATIRGGRRRSRCLAMVKAAASQVSSGALLFLFRRLLCCVAKVDGRRSRPPWRGTMITI
Homology
[Close]
BLAST of CsaV3_1G033830 vs. NCBI nr
Match: XP_011648508.1 (PREDICTED: uncharacterized protein LOC105434501 [Cucumis sativus] >KGN65687.1 hypothetical protein Csa_1G497810 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 2.1e-40
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0 

Query: 1   MASVCISECVDNACIVSAARPTYVNLQRWSEEEKWSTERRRPRPRAADGISRRQMYLRSY 60
           MASVCISECVDNACIVSAARPTYVNLQRWSEEEKWSTERRRPRPRAADGISRRQMYLRSY
Sbjct: 1   MASVCISECVDNACIVSAARPTYVNLQRWSEEEKWSTERRRPRPRAADGISRRQMYLRSY 60

Query: 61  TFSREDIVVPETTTQNCFGKIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           TFSREDIVVPETTTQNCFGKIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  TFSREDIVVPETTTQNCFGKIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXVAKVDGRRSRP 138
           XXXXXXVAKVDGRRSRP
Sbjct: 121 XXXXXXVAKVDGRRSRP 137

[Close]
BLAST of CsaV3_1G033830 vs. NCBI nr
Match: XP_008457578.1 (PREDICTED: uncharacterized protein LOC103497245 [Cucumis melo])

HSP 1 Score: 164.9 bits (416), Expect = 2.1e-37
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 0 

Query: 1  MASVCISECVDNACIVSAARPTYVNLQRWSEEEKWSTERRRPRPRAADGISRRQMYLRSY 60
          MASVCISECVDNACIVSAA+PTYVNLQRWSEEEKWSTERRRPRPRAA+GISRRQMYLRSY
Sbjct: 1  MASVCISECVDNACIVSAAQPTYVNLQRWSEEEKWSTERRRPRPRAAEGISRRQMYLRSY 60

Query: 61 TFSREDIVVPETTTQNCFGKIR 83
          TFSRED VVPETTTQNCFGKIR
Sbjct: 61 TFSREDTVVPETTTQNCFGKIR 82

[Close]
BLAST of CsaV3_1G033830 vs. NCBI nr
Match: XP_022964754.1 (uncharacterized protein LOC111464745 [Cucurbita moschata])

HSP 1 Score: 123.2 bits (308), Expect = 7.1e-25
Identity = 59/82 (71.95%), Postives = 67/82 (81.71%), Query Frame = 0 

Query: 1  MASVCISECVDNACIVSAARPTYVNLQRWSEEEKWSTERRRPRPRAADGISRRQMYLRSY 60
          MASVCISEC+++ACI+ A RPTY +LQRW EEE  S E RRPR RAADGISRRQMYLRSY
Sbjct: 1  MASVCISECINDACIIPAGRPTYFSLQRWPEEEDGSVEPRRPRVRAADGISRRQMYLRSY 60

Query: 61 TFSREDIVVPETTTQNCFGKIR 83
          TF RED VV E+T Q C GK++
Sbjct: 61 TFCREDTVVHESTAQTCLGKLK 82

[Close]
BLAST of CsaV3_1G033830 vs. NCBI nr
Match: XP_022970388.1 (uncharacterized protein LOC111469389 [Cucurbita maxima])

HSP 1 Score: 122.5 bits (306), Expect = 1.2e-24
Identity = 59/82 (71.95%), Postives = 67/82 (81.71%), Query Frame = 0 

Query: 1  MASVCISECVDNACIVSAARPTYVNLQRWSEEEKWSTERRRPRPRAADGISRRQMYLRSY 60
          MASVCISEC+++ACI+ A RPTY +LQRW EEE  S E RRPR RAADGISRRQMYLRSY
Sbjct: 1  MASVCISECINDACIIPAGRPTYFSLQRWPEEEDGSVEPRRPRLRAADGISRRQMYLRSY 60

Query: 61 TFSREDIVVPETTTQNCFGKIR 83
          TFSRED  V E+T Q C GK++
Sbjct: 61 TFSREDTEVHESTAQTCLGKLK 82

[Close]
BLAST of CsaV3_1G033830 vs. NCBI nr
Match: XP_023519361.1 (uncharacterized protein LOC111782795 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.9 bits (302), Expect = 3.5e-24
Identity = 58/82 (70.73%), Postives = 66/82 (80.49%), Query Frame = 0 

Query: 1  MASVCISECVDNACIVSAARPTYVNLQRWSEEEKWSTERRRPRPRAADGISRRQMYLRSY 60
          MASVCISEC+++ CI+ A RPTY +LQRW EEE  S E RRPR RAADGISRRQMYLRSY
Sbjct: 1  MASVCISECINDTCIIPAGRPTYFSLQRWPEEEDGSVEPRRPRLRAADGISRRQMYLRSY 60

Query: 61 TFSREDIVVPETTTQNCFGKIR 83
          TFSRED  V E+T Q C GK++
Sbjct: 61 TFSREDTEVHESTAQTCLGKLK 82

[Close]
BLAST of CsaV3_1G033830 vs. TAIR10
Match: AT5G02640.1 (unknown protein)

HSP 1 Score: 60.8 bits (146), Expect = 7.9e-10
Identity = 41/96 (42.71%), Postives = 53/96 (55.21%), Query Frame = 0 

Query: 1  MASVCISECVDNA----CIVSAARPTYVNLQRWSEEE-KWSTERRR----PRPRAADGIS 60
          M SVCIS C+++A      V   R +YVNL +W E + ++    RR    P  R  D IS
Sbjct: 1  MNSVCISSCINDAHDPRVPVRPVRASYVNLYKWPESDAEFVRSVRRGGGLPAARVVDSIS 60

Query: 61 RRQMYLRSYTFSRED-----IVVPETTTQNCFGKIR 83
           RQMYLRSYTFSRED       V   T  +C G+++
Sbjct: 61 CRQMYLRSYTFSREDDESKSEKVSSGTQTSCLGRVK 96

[Close]
BLAST of CsaV3_1G033830 vs. TAIR10
Match: AT3G46300.1 (unknown protein)

HSP 1 Score: 46.2 bits (108), Expect = 2.0e-05
Identity = 33/77 (42.86%), Postives = 41/77 (53.25%), Query Frame = 0 

Query: 1  MASVCISECV----DNACIVSAARP--TYVNLQRWSEEE-----KWSTERRRPRPRAADG 60
          MAS CI +CV    D+ C+    RP  TY NL +W   E       + +  + R    D 
Sbjct: 1  MASKCIDDCVNIKRDSICV----RPVMTYANLYKWPMAEAEFVRSINHDGSQHRTTVVDS 60

Query: 61 ISRRQMYLRSYTFSRED 67
          IS RQMYLRSYTFS E+
Sbjct: 61 ISCRQMYLRSYTFSTEE 73

[Close]
BLAST of CsaV3_1G033830 vs. TAIR10
Match: AT3G46310.1 (unknown protein)

HSP 1 Score: 42.0 bits (97), Expect = 3.8e-04
Identity = 30/73 (41.10%), Postives = 39/73 (53.42%), Query Frame = 0 

Query: 1  MASVCISECV---DNACIVSAARPTYVNLQRWSEEE-----KWSTERRRPRPRAADGISR 60
          MAS CI +CV   +NA  V   R T+  + +W   E       S +    R  A + +S 
Sbjct: 1  MASKCIGDCVNIKNNAICVRPGR-THAKIHKWPMAEVEFVQSISQDGSPRRTTAVESLSC 60

Query: 61 RQMYLRSYTFSRE 66
          RQMYLRSYTFSR+
Sbjct: 61 RQMYLRSYTFSRK 72

[Close]
BLAST of CsaV3_1G033830 vs. TrEMBL
Match: tr|A0A0A0LXY3|A0A0A0LXY3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G497810 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.4e-40
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0 

Query: 1   MASVCISECVDNACIVSAARPTYVNLQRWSEEEKWSTERRRPRPRAADGISRRQMYLRSY 60
           MASVCISECVDNACIVSAARPTYVNLQRWSEEEKWSTERRRPRPRAADGISRRQMYLRSY
Sbjct: 1   MASVCISECVDNACIVSAARPTYVNLQRWSEEEKWSTERRRPRPRAADGISRRQMYLRSY 60

Query: 61  TFSREDIVVPETTTQNCFGKIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           TFSREDIVVPETTTQNCFGKIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  TFSREDIVVPETTTQNCFGKIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXVAKVDGRRSRP 138
           XXXXXXVAKVDGRRSRP
Sbjct: 121 XXXXXXVAKVDGRRSRP 137

[Close]
BLAST of CsaV3_1G033830 vs. TrEMBL
Match: tr|A0A1S3C748|A0A1S3C748_CUCME (uncharacterized protein LOC103497245 OS=Cucumis melo OX=3656 GN=LOC103497245 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.4e-37
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 0 

Query: 1  MASVCISECVDNACIVSAARPTYVNLQRWSEEEKWSTERRRPRPRAADGISRRQMYLRSY 60
          MASVCISECVDNACIVSAA+PTYVNLQRWSEEEKWSTERRRPRPRAA+GISRRQMYLRSY
Sbjct: 1  MASVCISECVDNACIVSAAQPTYVNLQRWSEEEKWSTERRRPRPRAAEGISRRQMYLRSY 60

Query: 61 TFSREDIVVPETTTQNCFGKIR 83
          TFSRED VVPETTTQNCFGKIR
Sbjct: 61 TFSREDTVVPETTTQNCFGKIR 82

[Close]
BLAST of CsaV3_1G033830 vs. TrEMBL
Match: tr|A0A1S3CKF0|A0A1S3CKF0_CUCME (uncharacterized protein LOC103501967 OS=Cucumis melo OX=3656 GN=LOC103501967 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.9e-11
Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 0 

Query: 1  MASVCISECVDNACIVSAARPTYVNLQRWSEEE----KWSTERRRPRPRAADGISRRQMY 60
          MASVCIS C+++A +    RPTY+NL +W E +    +  + +     R  D IS RQMY
Sbjct: 1  MASVCISNCINDAHL--PVRPTYINLYKWPESDAEFIRSVSSKLNRTSRVVDSISCRQMY 60

Query: 61 LRSYTFSREDIVVPETTTQNCFGKI 82
          LRSYTFSRE+   PET T  CF K+
Sbjct: 61 LRSYTFSREEEHAPETKTNKCFAKV 83

[Close]
BLAST of CsaV3_1G033830 vs. TrEMBL
Match: tr|A0A0A0KET2|A0A0A0KET2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G302120 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.9e-11
Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 0 

Query: 1  MASVCISECVDNACIVSAARPTYVNLQRWSEEE----KWSTERRRPRPRAADGISRRQMY 60
          MASVCIS C+++A +    RPTY+NL +W E +    +  + +     R  D IS RQMY
Sbjct: 1  MASVCISNCINDARL--PVRPTYINLYKWPESDAEFIRSVSSKLNRTSRVVDSISCRQMY 60

Query: 61 LRSYTFSREDIVVPETTTQNCFGKI 82
          LRSYTFSRE+   PET T  CF K+
Sbjct: 61 LRSYTFSREEEHAPETKTNKCFAKV 83

[Close]
BLAST of CsaV3_1G033830 vs. TrEMBL
Match: tr|A0A1S3UZS4|A0A1S3UZS4_VIGRR (uncharacterized protein LOC106770254 OS=Vigna radiata var. radiata OX=3916 GN=LOC106770254 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.6e-10
Identity = 43/87 (49.43%), Postives = 54/87 (62.07%), Query Frame = 0 

Query: 1  MASVCISECVDNACIVSA-ARPTYVNLQRWSEEEKWSTERRRP----RPRAADGISRRQM 60
          M+SVCIS CV +A +     R TY+NL +W E +     RRR      PR  D +S RQM
Sbjct: 1  MSSVCISNCVSDARVPRVPVRATYMNLYKWPESDAEFVRRRRSHVCGHPRVVDSVSCRQM 60

Query: 61 YLRSYTFSREDIVVPETTTQNCFGKIR 83
          YLRSY FSR++  VPE  TQ CFGK++
Sbjct: 61 YLRSYKFSRKE-TVPE-RTQKCFGKVK 85

The following BLAST results are available for this feature:
BLAST of CsaV3_1G033830 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011648508.12.1e-40100.00PREDICTED: uncharacterized protein LOC105434501 [Cucumis sativus] >KGN65687.1 hy... [more]
XP_008457578.12.1e-3796.34PREDICTED: uncharacterized protein LOC103497245 [Cucumis melo][more]
XP_022964754.17.1e-2571.95uncharacterized protein LOC111464745 [Cucurbita moschata][more]
XP_022970388.11.2e-2471.95uncharacterized protein LOC111469389 [Cucurbita maxima][more]
XP_023519361.13.5e-2470.73uncharacterized protein LOC111782795 [Cucurbita pepo subsp. pepo][more]
BLAST of CsaV3_1G033830 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G02640.17.9e-1042.71unknown protein[more]
AT3G46300.12.0e-0542.86unknown protein[more]
AT3G46310.13.8e-0441.10unknown protein[more]
BLAST of CsaV3_1G033830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G033830 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LXY3|A0A0A0LXY3_CUCSA1.4e-40100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G497810 PE=4 SV=1[more]
tr|A0A1S3C748|A0A1S3C748_CUCME1.4e-3796.34uncharacterized protein LOC103497245 OS=Cucumis melo OX=3656 GN=LOC103497245 PE=... [more]
tr|A0A1S3CKF0|A0A1S3CKF0_CUCME3.9e-1148.24uncharacterized protein LOC103501967 OS=Cucumis melo OX=3656 GN=LOC103501967 PE=... [more]
tr|A0A0A0KET2|A0A0A0KET2_CUCSA3.9e-1148.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G302120 PE=4 SV=1[more]
tr|A0A1S3UZS4|A0A1S3UZS4_VIGRR5.6e-1049.43uncharacterized protein LOC106770254 OS=Vigna radiata var. radiata OX=3916 GN=LO... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G033830.1CsaV3_1G033830.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35304FAMILY NOT NAMEDcoord: 1..131

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G033830CSPI01G22680Wild cucumber (PI 183967)cpicucB000
CsaV3_1G033830Cucsa.213610Cucumber (Gy14) v1cgycucB333
CsaV3_1G033830CmaCh01G005800Cucurbita maxima (Rimu)cmacucB0512
CsaV3_1G033830CmoCh13G001500Cucurbita moschata (Rifu)cmocucB0236
CsaV3_1G033830CmoCh02G008470Cucurbita moschata (Rifu)cmocucB0677
CsaV3_1G033830Cp4.1LG20g08720Cucurbita pepo (Zucchini)cpecucB0625
CsaV3_1G033830Cp4.1LG05g08770Cucurbita pepo (Zucchini)cpecucB0875
CsaV3_1G033830Cp4.1LG02g13250Cucurbita pepo (Zucchini)cpecucB0664
CsaV3_1G033830CsGy1G022230Cucumber (Gy14) v2cgybcucB001
CsaV3_1G033830Carg20261Silver-seed gourdcarcucB0337
CsaV3_1G033830Carg12352Silver-seed gourdcarcucB0472
CsaV3_1G033830Carg21022Silver-seed gourdcarcucB0765
CsaV3_1G033830Cla008267Watermelon (97103) v1cucwmB026
CsaV3_1G033830Cla013269Watermelon (97103) v1cucwmB075
CsaV3_1G033830MELO3C020681Melon (DHL92) v3.5.1cucmeB025
CsaV3_1G033830ClCG02G020590Watermelon (Charleston Gray)cucwcgB031
CsaV3_1G033830ClCG03G001760Watermelon (Charleston Gray)cucwcgB051
CsaV3_1G033830Lsi02G013790Bottle gourd (USVL1VR-Ls)cuclsiB031
CsaV3_1G033830MELO3C020681.2Melon (DHL92) v3.6.1cucmedB023
CsaV3_1G033830Cla97C02G046570Watermelon (97103) v2cucwmbB024
CsaV3_1G033830Cla97C03G052740Watermelon (97103) v2cucwmbB042
CsaV3_1G033830Bhi10G000525Wax gourdcucwgoB021
CsaV3_1G033830Bhi08G000563Wax gourdcucwgoB050
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G033830Silver-seed gourdcarcucB0336
CsaV3_1G033830Silver-seed gourdcarcucB0364
CsaV3_1G033830Cucumber (Gy14) v2cgybcucB163
CsaV3_1G033830Cucumber (Gy14) v1cgycucB055
CsaV3_1G033830Cucurbita maxima (Rimu)cmacucB0250
CsaV3_1G033830Cucurbita maxima (Rimu)cmacucB0648
CsaV3_1G033830Cucurbita moschata (Rifu)cmocucB0500
CsaV3_1G033830Cucurbita moschata (Rifu)cmocucB0633
CsaV3_1G033830Cucurbita pepo (Zucchini)cpecucB0331
CsaV3_1G033830Wild cucumber (PI 183967)cpicucB201
CsaV3_1G033830Bottle gourd (USVL1VR-Ls)cuclsiB018
CsaV3_1G033830Melon (DHL92) v3.5.1cucmeB090
CsaV3_1G033830Watermelon (Charleston Gray)cucwcgB065
CsaV3_1G033830Watermelon (97103) v1cucwmB072
CsaV3_1G033830Cucumber (Chinese Long) v3cuccucB029