Carg12352-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12352-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Protein unc-80 like
Location	Cucurbita_argyrosperma_scaffold_074 : 467000 .. 467389 (+)
Sequence length	390

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCCGTCTGCATATCAGAATGCGTCGACAACGTCTGCGTCGTCCCGGGCGGCCGCCCGACCCACGTGAACCTGCAGCGGTGTCCGGAGGAGGAGAACGACTCTGCAGAGAGAGAACGCCGCCGCCCACGGCCGAGAGGGGCTCGCCGACAAATGTATCTGAGGAGCTACACCTTTTCTAGAGAGGATGCCGTCGCCCCTAAGGGTACAACTCAGCACTGCCTTGGGAAGCTCAGGTCATTTCGGAAGCCGGAGGAGATCCGCGAAGGGCTGAGGAAGAGGAGGAGCCGCTGTTTCGCCGTTGCTAGGGCCGCCGCCAAGCAGGGTTCTTCCGGTGGTGCGTTGCTATCCATGTTTCGACGGCTGGTTTGTTGTGGCGGCCGGTAA

mRNA sequence

ATGGCCTCCGTCTGCATATCAGAATGCGTCGACAACGTCTGCGTCGTCCCGGGCGGCCGCCCGACCCACGTGAACCTGCAGCGGTGTCCGGAGGAGGAGAACGACTCTGCAGAGAGAGAACGCCGCCGCCCACGGCCGAGAGGGGCTCGCCGACAAATGTATCTGAGGAGCTACACCTTTTCTAGAGAGGATGCCGTCGCCCCTAAGGGTACAACTCAGCACTGCCTTGGGAAGCTCAGGTCATTTCGGAAGCCGGAGGAGATCCGCGAAGGGCTGAGGAAGAGGAGGAGCCGCTGTTTCGCCGTTGCTAGGGCCGCCGCCAAGCAGGGTTCTTCCGGTGGTGCGTTGCTATCCATGTTTCGACGGCTGGTTTGTTGTGGCGGCCGGTAA

Coding sequence (CDS)

ATGGCCTCCGTCTGCATATCAGAATGCGTCGACAACGTCTGCGTCGTCCCGGGCGGCCGCCCGACCCACGTGAACCTGCAGCGGTGTCCGGAGGAGGAGAACGACTCTGCAGAGAGAGAACGCCGCCGCCCACGGCCGAGAGGGGCTCGCCGACAAATGTATCTGAGGAGCTACACCTTTTCTAGAGAGGATGCCGTCGCCCCTAAGGGTACAACTCAGCACTGCCTTGGGAAGCTCAGGTCATTTCGGAAGCCGGAGGAGATCCGCGAAGGGCTGAGGAAGAGGAGGAGCCGCTGTTTCGCCGTTGCTAGGGCCGCCGCCAAGCAGGGTTCTTCCGGTGGTGCGTTGCTATCCATGTTTCGACGGCTGGTTTGTTGTGGCGGCCGGTAA

Protein sequence

MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDSAERERRRPRPRGARRQMYLRSYTFSREDAVAPKGTTQHCLGKLRSFRKPEEIREGLRKRRSRCFAVARAAAKQGSSGGALLSMFRRLVCCGGR

Homology

[Close]

BLAST of Carg12352-RA vs. NCBI nr
Match: XP_022949319.1 (uncharacterized protein LOC111452708 [Cucurbita moschata])

HSP 1 Score: 234.6 bits (597), Expect = 1.9e-58
Identity = 128/129 (99.22%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 1   MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDXXXXXXXXXXXXGARRQMYLRSYTF 60
           MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDXXXXXXXXXXXXGARRQMYLRSYTF
Sbjct: 1   MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDXXXXXXXXXXXXGARRQMYLRSYTF 60

Query: 61  SREDAVAPKGTTQHCLGKLRSFRKPEEIREGLRKRRSRCFAVARAAAKQGSSGGALLSMF 120
           SREDAVAPKGTTQHCLGKLRSFRKPEEIREGLRKRRSRCFAVAR AAKQGSSGGALLSMF
Sbjct: 61  SREDAVAPKGTTQHCLGKLRSFRKPEEIREGLRKRRSRCFAVARTAAKQGSSGGALLSMF 120

Query: 121 RRLVCCGGR 130
           RRLVCCGGR
Sbjct: 121 RRLVCCGGR 129

[Close]

BLAST of Carg12352-RA vs. NCBI nr
Match: XP_023524571.1 (uncharacterized protein LOC111788468 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 225.7 bits (574), Expect = 8.9e-56
Identity = 125/129 (96.90%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 1   MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDXXXXXXXXXXXXGARRQMYLRSYTF 60
           MASVCISECVDNVCVVPGGRPTHVNLQR PEEEN XXXXXXXXXXXXGARRQMYLRSYTF
Sbjct: 1   MASVCISECVDNVCVVPGGRPTHVNLQRWPEEENXXXXXXXXXXXXXGARRQMYLRSYTF 60

Query: 61  SREDAVAPKGTTQHCLGKLRSFRKPEEIREGLRKRRSRCFAVARAAAKQGSSGGALLSMF 120
           SREDAVAPKGTTQHCLGKLRSFRKPE+IREGLRKRRSRCFAVARAAAKQ SSGGALLSMF
Sbjct: 61  SREDAVAPKGTTQHCLGKLRSFRKPEDIREGLRKRRSRCFAVARAAAKQASSGGALLSMF 120

Query: 121 RRLVCCGGR 130
           RRLVCCGGR
Sbjct: 121 RRLVCCGGR 129

[Close]

BLAST of Carg12352-RA vs. NCBI nr
Match: XP_022997982.1 (uncharacterized protein LOC111492773 [Cucurbita maxima])

HSP 1 Score: 186.0 bits (471), Expect = 7.8e-44
Identity = 98/106 (92.45%), Postives = 100/106 (94.34%), Query Frame = 0


Query: 1   MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDXXXXXXXXXXXXGARRQMYLRSYTF 60
           MASVCISECVDNVCVVPGGRPTHVNL+RCPEEEND    XXXXXXX GARRQMYLRSYTF
Sbjct: 1   MASVCISECVDNVCVVPGGRPTHVNLKRCPEEENDSAEKXXXXXXXRGARRQMYLRSYTF 60

Query: 61  SREDAVAPKGTTQHCLGKLRSFRKPEEIREGLRKRRSRCFAVARAA 107
           SREDAVAP GTTQHCLGKLRSFRKPEEIR+GLRKRRSRCFAVARAA
Sbjct: 61  SREDAVAPVGTTQHCLGKLRSFRKPEEIRQGLRKRRSRCFAVARAA 106

[Close]

BLAST of Carg12352-RA vs. NCBI nr
Match: XP_023519361.1 (uncharacterized protein LOC111782795 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 135.2 bits (339), Expect = 1.6e-28
Identity = 74/128 (57.81%), Postives = 89/128 (69.53%), Query Frame = 0


Query: 1   MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDXXXXXXXXXXXXG--ARRQMYLRSY 60
           MASVCISEC+++ C++P GRPT+ +LQR PEEE+                +RRQMYLRSY
Sbjct: 1   MASVCISECINDTCIIPAGRPTYFSLQRWPEEEDGSVEPRRPRLRAADGISRRQMYLRSY 60

Query: 61  TFSREDAVAPKGTTQHCLGKLRSFRKPEEIREGLRKRRSRCFAVARAAAKQGSSGGALLS 120
           TFSRED    + T Q CLGKL+  R+P EIR G   RRSRCFA+ RAAA + SS GALLS
Sbjct: 61  TFSREDTEVHESTAQTCLGKLKRRRRPAEIRGG--GRRSRCFAIVRAAAAKASS-GALLS 120

Query: 121 MFRRLVCC 127
           MFRRL+ C
Sbjct: 121 MFRRLLSC 125

[Close]

BLAST of Carg12352-RA vs. NCBI nr
Match: XP_022964754.1 (uncharacterized protein LOC111464745 [Cucurbita moschata])

HSP 1 Score: 134.8 bits (338), Expect = 2.1e-28
Identity = 74/128 (57.81%), Postives = 89/128 (69.53%), Query Frame = 0


Query: 1   MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDXXXXXXXXXXXXG--ARRQMYLRSY 60
           MASVCISEC+++ C++P GRPT+ +LQR PEEE+                +RRQMYLRSY
Sbjct: 1   MASVCISECINDACIIPAGRPTYFSLQRWPEEEDGSVEPRRPRVRAADGISRRQMYLRSY 60

Query: 61  TFSREDAVAPKGTTQHCLGKLRSFRKPEEIREGLRKRRSRCFAVARAAAKQGSSGGALLS 120
           TF RED V  + T Q CLGKL+  R+P EIR G   RRSRCFA+ RAAA + SS GALLS
Sbjct: 61  TFCREDTVVHESTAQTCLGKLKWRRRPAEIRGG--GRRSRCFAIVRAAAAKASS-GALLS 120

Query: 121 MFRRLVCC 127
           MFRRL+ C
Sbjct: 121 MFRRLLSC 125

[Close]

BLAST of Carg12352-RA vs. TAIR10
Match: AT5G02640.1 (unknown protein)

HSP 1 Score: 51.2 bits (121), Expect = 5.5e-07
Identity = 35/96 (36.46%), Postives = 46/96 (47.92%), Query Frame = 0


Query: 1  MASVCISECVDNV----CVVPGGRPTHVNLQRCPEEENDXXXXXXXXXXXXGAR------ 60
          M SVCIS C+++       V   R ++VNL + PE + +             AR      
Sbjct: 1  MNSVCISSCINDAHDPRVPVRPVRASYVNLYKWPESDAEFVRSVRRGGGLPAARVVDSIS 60

Query: 61 -RQMYLRSYTFSRED-----AVAPKGTTQHCLGKLR 81
           RQMYLRSYTFSRED          GT   CLG+++
Sbjct: 61 CRQMYLRSYTFSREDDESKSEKVSSGTQTSCLGRVK 96

[Close]

BLAST of Carg12352-RA vs. TrEMBL
Match: tr|A0A1S3C748|A0A1S3C748_CUCME (uncharacterized protein LOC103497245 OS=Cucumis melo OX=3656 GN=LOC103497245 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 8.9e-28
Identity = 75/129 (58.14%), Postives = 89/129 (68.99%), Query Frame = 0


Query: 1   MASVCISECVDNVCVVPGGRPTHVNLQRCPEEE--NDXXXXXXXXXXXXGARRQMYLRSY 60
           MASVCISECVDN C+V   +PT+VNLQR  EEE  +              +RRQMYLRSY
Sbjct: 1   MASVCISECVDNACIVSAAQPTYVNLQRWSEEEKWSTERRRPRPRAAEGISRRQMYLRSY 60

Query: 61  TFSREDAVAPKGTTQHCLGKLRSFR-KPEEIREGLRKRRSRCFAVARAAAKQGSSGGALL 120
           TFSRED V P+ TTQ+C GK+R  R +P  IR    +RRSRCFA+ +AAA Q SS GAL+
Sbjct: 61  TFSREDTVVPETTTQNCFGKIRRRRQRPARIRGS--RRRSRCFAMVKAAATQASS-GALV 120

Query: 121 SMFRRLVCC 127
            MFRRL+CC
Sbjct: 121 LMFRRLLCC 126

[Close]

BLAST of Carg12352-RA vs. TrEMBL
Match: tr|A0A0A0LXY3|A0A0A0LXY3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G497810 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.4e-17
Identity = 49/82 (59.76%), Postives = 56/82 (68.29%), Query Frame = 0


Query: 1  MASVCISECVDNVCVVPGGRPTHVNLQRCPEEE--NDXXXXXXXXXXXXGARRQMYLRSY 60
          MASVCISECVDN C+V   RPT+VNLQR  EEE  +              +RRQMYLRSY
Sbjct: 1  MASVCISECVDNACIVSAARPTYVNLQRWSEEEKWSTERRRPRPRAADGISRRQMYLRSY 60

Query: 61 TFSREDAVAPKGTTQHCLGKLR 81
          TFSRED V P+ TTQ+C GK+R
Sbjct: 61 TFSREDIVVPETTTQNCFGKIR 82

[Close]

BLAST of Carg12352-RA vs. TrEMBL
Match: tr|M5W229|M5W229_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G246400 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.5e-06
Identity = 49/143 (34.27%), Postives = 70/143 (48.95%), Query Frame = 0


Query: 1   MASVCISECVDNV--CVVPGGRPTHVNLQRCPEEENDXXXXXXXXXXXXGAR-------- 60
           M SVCIS CV++     VP  R T+VNL + PE + +            GA+        
Sbjct: 1   MTSVCISNCVNDARDPRVP-MRATYVNLYKWPESDAEFVRSVSSKGRRSGAQQHGHPRVV 60

Query: 61  -----RQMYLRSYTFSREDAVAPKGTTQHCLGKLRS--FRKPEEIREGLRKRRSRCFAVA 120
                RQMYLRSYTFSR++ V  K  TQ C G+++       +   +G RKR ++C  + 
Sbjct: 61  DSISCRQMYLRSYTFSRKETVPEK--TQKCFGRVKEKMVNNKKGKAKGGRKRSNKCLVLR 120

Query: 121 RAAAKQGSSGGALLSMFRRLVCC 127
           +    +  S  AL  +FRR + C
Sbjct: 121 KV---KELSSAALFRIFRRFLSC 137

[Close]

BLAST of Carg12352-RA vs. TrEMBL
Match: tr|A0A1S3CKF0|A0A1S3CKF0_CUCME (uncharacterized protein LOC103501967 OS=Cucumis melo OX=3656 GN=LOC103501967 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.5e-06
Identity = 47/151 (31.13%), Postives = 70/151 (46.36%), Query Frame = 0


Query: 1   MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDXXXXXXXXXXXXG------ARRQMY 60
           MASVCIS C+++  +    RPT++NL + PE + +                   + RQMY
Sbjct: 1   MASVCISNCINDAHLPV--RPTYINLYKWPESDAEFIRSVSSKLNRTSRVVDSISCRQMY 60

Query: 61  LRSYTFSREDAVAPKGTTQHCLGKLRSFRK-------------------PEEIREGLRKR 120
           LRSYTFSRE+  AP+  T  C  K+   +K                    E+IR+  R +
Sbjct: 61  LRSYTFSREEEHAPETKTNKCFAKVGMRQKISXXXXXXXXXXXXXXXXXDEKIRKSSRLK 120

Query: 121 RSRCFAVARAAAKQGSSGGALLSMFRRLVCC 127
           +++  + A           AL S+FRRL+ C
Sbjct: 121 KAKEISCA-----------ALTSVFRRLLSC 138

[Close]

BLAST of Carg12352-RA vs. TrEMBL
Match: tr|A0A2R6PF48|A0A2R6PF48_ACTCH (Protein unc-80 like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc30213 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.3e-06
Identity = 50/140 (35.71%), Postives = 72/140 (51.43%), Query Frame = 0


Query: 1   MASVCISECVDNVCVVPGGRPTHVNLQRCPEEENDXXXXXXXXXXXXG------------ 60
           MAS C S C+++V V P  R T+VNL + PE + +                         
Sbjct: 1   MASACKSNCINDVIVRPPIRATYVNLYKWPESDAEFVRSVSSAGSRRADASSGHPRVVDS 60

Query: 61  -ARRQMYLRSYTFSREDAVAPKGTTQHCLGKLRSFRKPEEIREGLRKRRSR-CFAVARAA 120
            + RQ+YLRSYTFSR+++V  K  T+ CLG++R     E +     +R+SR   +VAR A
Sbjct: 61  ISCRQLYLRSYTFSRKESVPEK--TRKCLGRVR-----ERVVLYRTERKSRGSDSVARRA 120

Query: 121 AKQGSSGGALLSMFRRLVCC 127
            +   S  AL + FRRL+ C
Sbjct: 121 KE--VSCAALSAAFRRLLSC 131

The following BLAST results are available for this feature:

BLAST of Carg12352-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949319.1	1.9e-58	99.22	uncharacterized protein LOC111452708 [Cucurbita moschata]	[more]
XP_023524571.1	8.9e-56	96.90	uncharacterized protein LOC111788468 [Cucurbita pepo subsp. pepo]	[more]
XP_022997982.1	7.8e-44	92.45	uncharacterized protein LOC111492773 [Cucurbita maxima]	[more]
XP_023519361.1	1.6e-28	57.81	uncharacterized protein LOC111782795 [Cucurbita pepo subsp. pepo]	[more]
XP_022964754.1	2.1e-28	57.81	uncharacterized protein LOC111464745 [Cucurbita moschata]	[more]

BLAST of Carg12352-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G02640.1	5.5e-07	36.46	unknown protein	[more]

BLAST of Carg12352-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg12352-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C748\|A0A1S3C748_CUCME	8.9e-28	58.14	uncharacterized protein LOC103497245 OS=Cucumis melo OX=3656 GN=LOC103497245 PE=...	[more]
tr\|A0A0A0LXY3\|A0A0A0LXY3_CUCSA	5.4e-17	59.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G497810 PE=4 SV=1	[more]
tr\|M5W229\|M5W229_PRUPE	1.5e-06	34.27	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G246400 PE=4 SV=1	[more]
tr\|A0A1S3CKF0\|A0A1S3CKF0_CUCME	2.5e-06	31.13	uncharacterized protein LOC103501967 OS=Cucumis melo OX=3656 GN=LOC103501967 PE=...	[more]
tr\|A0A2R6PF48\|A0A2R6PF48_ACTCH	3.3e-06	35.71	Protein unc-80 like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Ac...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg12352	Carg12352	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12352-RA.exon.1	Carg12352-RA.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg12352-RA.CDS.1	Carg12352-RA.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg12352-RA	Carg12352-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..51
None	No IPR available	PANTHER	PTHR35304	FAMILY NOT NAMED	coord: 1..127