Carg12096 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12096
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Late embryogenesis abundant protein Lea5
Location	Cucurbita_argyrosperma_scaffold_037 : 1196923 .. 1197324 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCGCTCTTTCTCCAACGTTAAGGTCCTCTCCGCTCTTGTTTCTGATGGCTTCTCTTCCGCTCTCAGCCGGTATTTCCTGTTTTTCTTGGATCTGTCTCGATTGTAGTGTTATTTTCTTTTTTTGTCGATGTTTATTTTGGTTGTTGTTTGTTTGTTTAGGCGTGGTTATGCGGCGGCTTCGCAAGGAGTTGCGTCGAGTGCGGTTAAAGGAGGAAGTGTTGCGGTGGCGAGGAGCGGTAATATGTTGAAGAAATCGGGGGAGGAGAAGGTTGTTGGATCGTCTGAGAAGGTTGCTTGGGTGCCGGATCCTGCCACTGGCTATTACAGACCGGAGAATCGCGGCGATGAGATCGATGTTGCCGAACTTCGATCGATTCTTCTTAAGAACAAGAACTGA

mRNA sequence

ATGGCTCGCTCTTTCTCCAACGTTAAGGTCCTCTCCGCTCTTGTTTCTGATGGCTTCTCTTCCGCTCTCAGCCGGCGTGGTTATGCGGCGGCTTCGCAAGGAGTTGCGTCGAGTGCGGTTAAAGGAGGAAGTGTTGCGGTGGCGAGGAGCGGTAATATGTTGAAGAAATCGGGGGAGGAGAAGGTTGTTGGATCGTCTGAGAAGGTTGCTTGGGTGCCGGATCCTGCCACTGGCTATTACAGACCGGAGAATCGCGGCGATGAGATCGATGTTGCCGAACTTCGATCGATTCTTCTTAAGAACAAGAACTGA

Coding sequence (CDS)

ATGGCTCGCTCTTTCTCCAACGTTAAGGTCCTCTCCGCTCTTGTTTCTGATGGCTTCTCTTCCGCTCTCAGCCGGCGTGGTTATGCGGCGGCTTCGCAAGGAGTTGCGTCGAGTGCGGTTAAAGGAGGAAGTGTTGCGGTGGCGAGGAGCGGTAATATGTTGAAGAAATCGGGGGAGGAGAAGGTTGTTGGATCGTCTGAGAAGGTTGCTTGGGTGCCGGATCCTGCCACTGGCTATTACAGACCGGAGAATCGCGGCGATGAGATCGATGTTGCCGAACTTCGATCGATTCTTCTTAAGAACAAGAACTGA

Protein sequence

MARSFSNVKVLSALVSDGFSSALSRRGYAAASQGVASSAVKGGSVAVARSGNMLKKSGEEKVVGSSEKVAWVPDPATGYYRPENRGDEIDVAELRSILLKNKN

Homology

[Close]

BLAST of Carg12096 vs. NCBI nr
Match: XP_022960392.1 (indole-3-acetic acid-induced protein ARG2-like [Cucurbita moschata] >XP_023004707.1 indole-3-acetic acid-induced protein ARG2-like [Cucurbita maxima])

HSP 1 Score: 191.4 bits (485), Expect = 1.5e-45
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MARSFSNVKVLSALVSDGFSSALSRRGYAAASQGVASSAVKGGSVAVARSGNMLKKSGEE 60
           MARSFSNVKVLSALVSDGFSSALSRRGYAAASQGVASSAVKGGSVAVARSGNMLKKSGEE
Sbjct: 1   MARSFSNVKVLSALVSDGFSSALSRRGYAAASQGVASSAVKGGSVAVARSGNMLKKSGEE 60

Query: 61  KVVGSSEKVAWVPDPATGYYRPENRGDEIDVAELRSILLKNKN 104
           KVVGSSEKVAWVPDPATGYYRPENRGDEIDVAELRSILLKNKN
Sbjct: 61  KVVGSSEKVAWVPDPATGYYRPENRGDEIDVAELRSILLKNKN 103

[Close]

BLAST of Carg12096 vs. NCBI nr
Match: XP_023513499.1 (indole-3-acetic acid-induced protein ARG2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 190.3 bits (482), Expect = 3.3e-45
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MARSFSNVKVLSALVSDGFSSALSRRGYAAASQGVASSAVKGGSVAVARSGNMLKKSGEE 60
           MARSFSNVKVLSALVSDGFSSALSRRGYAAASQGVASSAVKGGSV+VARSGNMLKKSGEE
Sbjct: 1   MARSFSNVKVLSALVSDGFSSALSRRGYAAASQGVASSAVKGGSVSVARSGNMLKKSGEE 60

Query: 61  KVVGSSEKVAWVPDPATGYYRPENRGDEIDVAELRSILLKNKN 104
           KVVGSSEKVAWVPDPATGYYRPENRGDEIDVAELRSILLKNKN
Sbjct: 61  KVVGSSEKVAWVPDPATGYYRPENRGDEIDVAELRSILLKNKN 103

[Close]

BLAST of Carg12096 vs. NCBI nr
Match: XP_008451558.1 (PREDICTED: indole-3-acetic acid-induced protein ARG2-like [Cucumis melo])

HSP 1 Score: 163.3 bits (412), Expect = 4.3e-37
Identity = 89/105 (84.76%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 1   MARSFSNVKVLSALVSDGFSSALSRRGYAAA--SQGVASSAVKGGSVAVARSGNMLKKSG 60
           MARSFSNVK+LSA+VSDGFSS L+ RGYAAA  SQGVASSAVKG  VA ARS N+LKKSG
Sbjct: 1   MARSFSNVKILSAVVSDGFSSLLTSRGYAAAAGSQGVASSAVKGAGVAAARSSNLLKKSG 60

Query: 61  EEKVVGSSEKVAWVPDPATGYYRPENRGDEIDVAELRSILLKNKN 104
           EEKVVGS+EKV+WVPDP TGYYRPENR DEIDVAELRSILLKNKN
Sbjct: 61  EEKVVGSTEKVSWVPDPVTGYYRPENRCDEIDVAELRSILLKNKN 105

[Close]

BLAST of Carg12096 vs. NCBI nr
Match: XP_022144227.1 (indole-3-acetic acid-induced protein ARG2 [Momordica charantia])

HSP 1 Score: 145.6 bits (366), Expect = 9.4e-32
Identity = 82/103 (79.61%), Postives = 89/103 (86.41%), Query Frame = 0


Query: 1   MARSFSNVKVLSALVSDGFSSALSRRGYAAASQGVASSAVKGGSVAVARSGNMLKKSGEE 60
           MARS S+VKVLSALV+DGFSSALSRRGYAAASQGV+SSA K   V      N+LKKSGE+
Sbjct: 1   MARSVSSVKVLSALVADGFSSALSRRGYAAASQGVSSSAAKAAGV------NLLKKSGED 60

Query: 61  KVVGSSEKVAWVPDPATGYYRPENRGDEIDVAELRSILLKNKN 104
           + VGSSEKV+WVPDP TGYYRPENR DEIDVAELRSILLKNKN
Sbjct: 61  R-VGSSEKVSWVPDPVTGYYRPENRTDEIDVAELRSILLKNKN 96

[Close]

BLAST of Carg12096 vs. NCBI nr
Match: XP_023920362.1 (indole-3-acetic acid-induced protein ARG2 [Quercus suber] >POF00370.1 indole-3-acetic acid-induced protein arg2 [Quercus suber])

HSP 1 Score: 134.4 bits (337), Expect = 2.2e-28
Identity = 77/107 (71.96%), Postives = 86/107 (80.37%), Query Frame = 0


Query: 1   MARSFSNVKVLSALVSDGFSSALSRRGYAAASQGVASSAVKGGSVAVARSGN----MLKK 60
           MARSFSN K+LSALV DGFS+ ++RRGYAAASQGVASS        VARSGN    M+KK
Sbjct: 1   MARSFSNAKLLSALVVDGFSNTITRRGYAAASQGVASS--------VARSGNSGSSMVKK 60

Query: 61  SGEEKVVGSSEKVAWVPDPATGYYRPENRGDEIDVAELRSILLKNKN 104
            GEE +VGS+EKV+WVPDP TGYYRPENR DEIDVAELR+I L NKN
Sbjct: 61  QGEE-IVGSTEKVSWVPDPVTGYYRPENRVDEIDVAELRAIFLNNKN 98

[Close]

BLAST of Carg12096 vs. TAIR10
Match: AT4G02380.1 (senescence-associated gene 21)

HSP 1 Score: 96.7 bits (239), Expect = 9.1e-21
Identity = 58/103 (56.31%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 1   MARSFSNVKVLSALVSDGFSSALSRRGYAA-ASQGVASSAVKGGSVAVARSGNMLKKSGE 60
           MARS SNVK++SA VS   S+A+ RRGYAA A+QG  SS  + G+VA A    ++KK G 
Sbjct: 1   MARSISNVKIVSAFVSRELSNAIFRRGYAATAAQGSVSSGGRSGAVASA----VMKKKGV 60

Query: 61  EKVVGSSEKVAWVPDPATGYYRPENRGDEIDVAELRSILLKNK 103
           E+   S++K++WVPDP TGYYRPE   +EID AELR+ LL NK
Sbjct: 61  EE---STQKISWVPDPKTGYYRPETGSNEIDAAELRAALLNNK 96

[Close]

BLAST of Carg12096 vs. TAIR10
Match: AT1G02820.1 (Late embryogenesis abundant 3 (LEA3) family protein)

HSP 1 Score: 82.8 bits (203), Expect = 1.4e-16
Identity = 52/102 (50.98%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 1   MARSFSNVKVLSALVSDGFSSALSRRGYAAASQGVASSAVKGGSVAVARSGNMLKKSGEE 60
           MARS +N K+ S   S+  S+A+ RRG+AAA++         GSV+ A    M K++GE 
Sbjct: 1   MARSLANAKIQSVFGSEKLSNAVFRRGFAAAAK-----TALDGSVSTA---EMKKRAGE- 60

Query: 61  KVVGSSEKVAWVPDPATGYYRPENRGDEIDVAELRSILLKNK 103
               SSEK  WVPDP TGYYRPE   +EID AELR+ILL NK
Sbjct: 61  ---ASSEKAPWVPDPKTGYYRPETVSEEIDPAELRAILLNNK 90

[Close]

BLAST of Carg12096 vs. TAIR10
Match: AT4G15910.1 (drought-induced 21)

HSP 1 Score: 68.2 bits (165), Expect = 3.5e-12
Identity = 50/104 (48.08%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 2   ARSFSN-VKVLSALVSDGFS-SALSRRGYAAASQGVASSAV-KGGSVAVARSGNMLKKSG 61
           ARS S  VK L +  S   S S + RR Y A SQ V ++ + KGGS  V     M+ K  
Sbjct: 3   ARSLSGAVKSLCSAASGSLSCSIVLRRSYVATSQNVTAAGLSKGGSTRV-----MVGKM- 62

Query: 62  EEKVVGSSEKVAWVPDPATGYYRPENRGDEIDVAELRSILLKNK 103
           E++ +    + AW PDP TGYYRP NR  EID AELR +LLKNK
Sbjct: 63  EQRGLDQEAESAWGPDPVTGYYRPSNRAAEIDPAELRELLLKNK 100

[Close]

BLAST of Carg12096 vs. Swiss-Prot
Match: sp|P32292|ARG2_VIGRR (Indole-3-acetic acid-induced protein ARG2 OS=Vigna radiata var. radiata OX=3916 GN=ARG2 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.6e-22
Identity = 61/102 (59.80%), Postives = 76/102 (74.51%), Query Frame = 0


Query: 1   MARSFSNVKVLSALVSDGFSSALSRRGYAAASQGVASSAVKGGSVAVARSGNMLKKSGEE 60
           MARSF+NVKVLSALV+DGFS+  +R G+AAA+    S+   G S+     GNM+ KSGEE
Sbjct: 1   MARSFTNVKVLSALVADGFSNTTTRHGFAAAAXXTQSATRGGASI----GGNMVPKSGEE 60

Query: 61  KVVGSSEKVAWVPDPATGYYRPENRGDEIDVAELRSILLKNK 103
           KV G  EKV+WVPDP TGYYRPEN  +EIDVA++R+ +L  K
Sbjct: 61  KVRG-GEKVSWVPDPVTGYYRPENT-NEIDVADMRATVLGKK 96

[Close]

BLAST of Carg12096 vs. Swiss-Prot
Match: sp|Q93WF6|SAG21_ARATH (Protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SAG21 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.6e-19
Identity = 58/103 (56.31%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 1   MARSFSNVKVLSALVSDGFSSALSRRGYAA-ASQGVASSAVKGGSVAVARSGNMLKKSGE 60
           MARS SNVK++SA VS   S+A+ RRGYAA A+QG  SS  + G+VA A    ++KK G 
Sbjct: 1   MARSISNVKIVSAFVSRELSNAIFRRGYAATAAQGSVSSGGRSGAVASA----VMKKKGV 60

Query: 61  EKVVGSSEKVAWVPDPATGYYRPENRGDEIDVAELRSILLKNK 103
           E+   S++K++WVPDP TGYYRPE   +EID AELR+ LL NK
Sbjct: 61  EE---STQKISWVPDPKTGYYRPETGSNEIDAAELRAALLNNK 96

[Close]

BLAST of Carg12096 vs. Swiss-Prot
Match: sp|Q9SRX6|LEA2_ARATH (Late embryogenis abundant protein 2 OS=Arabidopsis thaliana OX=3702 GN=LEA2 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.4e-15
Identity = 52/102 (50.98%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 1   MARSFSNVKVLSALVSDGFSSALSRRGYAAASQGVASSAVKGGSVAVARSGNMLKKSGEE 60
           MARS +N K+ S   S+  S+A+ RRG+AAA++         GSV+ A    M K++GE 
Sbjct: 1   MARSLANAKIQSVFGSEKLSNAVFRRGFAAAAK-----TALDGSVSTA---EMKKRAGE- 60

Query: 61  KVVGSSEKVAWVPDPATGYYRPENRGDEIDVAELRSILLKNK 103
               SSEK  WVPDP TGYYRPE   +EID AELR+ILL NK
Sbjct: 61  ---ASSEKAPWVPDPKTGYYRPETVSEEIDPAELRAILLNNK 90

[Close]

BLAST of Carg12096 vs. Swiss-Prot
Match: sp|Q39644|LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis OX=2711 GN=LEA5 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.7e-13
Identity = 49/103 (47.57%), Postives = 59/103 (57.28%), Query Frame = 0


Query: 1   MARSFSNVKVLSALVSDGFSSALSRRGYAAASQGVASSAVKGGSVAVARSGNMLKKSGEE 60
           MARS    K+L A V+DG S ++SRRGYAAA+              ++R+G M K     
Sbjct: 1   MARSLFKAKLLLAPVADGISLSISRRGYAAAAP----------LGTISRTGIMEKNDLRP 60

Query: 61  KV-VGSSEKVAWVPDPATGYYRPENRGDEIDVAELRSILLKNK 103
            V   S    AW PDP TGYYRPENR  EID AELR +LL +K
Sbjct: 61  AVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHK 93

[Close]

BLAST of Carg12096 vs. Swiss-Prot
Match: sp|P46522|LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum OX=3635 GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-12
Identity = 45/103 (43.69%), Postives = 62/103 (60.19%), Query Frame = 0


Query: 1   MARSFSNVKVLSALVSDGFSSALSRRGYAAA-SQGVASSAVKGGSVAVARSGNMLKKSGE 60
           MARS S+ K+L A + DG   ++SRRGY+ A    V +S  + G++      + +K+S  
Sbjct: 1   MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSS 60

Query: 61  EKVVGSSEKVAWVPDPATGYYRPENRGDEIDVAELRSILLKNK 103
            +    S   AW PDP TGYYRPEN G EID AELR +LL ++
Sbjct: 61  SETRAYSS--AWAPDPVTGYYRPENCGAEIDAAELREMLLNHR 101

[Close]

BLAST of Carg12096 vs. TrEMBL
Match: tr|A0A1S3BRT2|A0A1S3BRT2_CUCME (indole-3-acetic acid-induced protein ARG2-like OS=Cucumis melo OX=3656 GN=LOC103492803 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.9e-37
Identity = 89/105 (84.76%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 1   MARSFSNVKVLSALVSDGFSSALSRRGYAAA--SQGVASSAVKGGSVAVARSGNMLKKSG 60
           MARSFSNVK+LSA+VSDGFSS L+ RGYAAA  SQGVASSAVKG  VA ARS N+LKKSG
Sbjct: 1   MARSFSNVKILSAVVSDGFSSLLTSRGYAAAAGSQGVASSAVKGAGVAAARSSNLLKKSG 60

Query: 61  EEKVVGSSEKVAWVPDPATGYYRPENRGDEIDVAELRSILLKNKN 104
           EEKVVGS+EKV+WVPDP TGYYRPENR DEIDVAELRSILLKNKN
Sbjct: 61  EEKVVGSTEKVSWVPDPVTGYYRPENRCDEIDVAELRSILLKNKN 105

[Close]

BLAST of Carg12096 vs. TrEMBL
Match: tr|A0A2P4L514|A0A2P4L514_QUESU (Indole-3-acetic acid-induced protein arg2 OS=Quercus suber OX=58331 GN=CFP56_71780 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.4e-28
Identity = 77/107 (71.96%), Postives = 86/107 (80.37%), Query Frame = 0


Query: 1   MARSFSNVKVLSALVSDGFSSALSRRGYAAASQGVASSAVKGGSVAVARSGN----MLKK 60
           MARSFSN K+LSALV DGFS+ ++RRGYAAASQGVASS        VARSGN    M+KK
Sbjct: 1   MARSFSNAKLLSALVVDGFSNTITRRGYAAASQGVASS--------VARSGNSGSSMVKK 60

Query: 61  SGEEKVVGSSEKVAWVPDPATGYYRPENRGDEIDVAELRSILLKNKN 104
            GEE +VGS+EKV+WVPDP TGYYRPENR DEIDVAELR+I L NKN
Sbjct: 61  QGEE-IVGSTEKVSWVPDPVTGYYRPENRVDEIDVAELRAIFLNNKN 98

[Close]

BLAST of Carg12096 vs. TrEMBL
Match: tr|A0A2N9I078|A0A2N9I078_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS1815 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.7e-26
Identity = 71/103 (68.93%), Postives = 80/103 (77.67%), Query Frame = 0


Query: 1   MARSFSNVKVLSALVSDGFSSALSRRGYAAASQGVASSAVKGGSVAVARSGNMLKKSGEE 60
           MARSFS  K+LSALV DGFS+ ++RRGYAAASQGV SS  + G         M+KK GEE
Sbjct: 1   MARSFSTAKLLSALVVDGFSNTITRRGYAAASQGVVSSLARSGGSGT----RMVKKQGEE 60

Query: 61  KVVGSSEKVAWVPDPATGYYRPENRGDEIDVAELRSILLKNKN 104
            VVGS+EKV+WVPDP TGYYRPENR DEIDVAELRSI L NK+
Sbjct: 61  -VVGSTEKVSWVPDPVTGYYRPENRVDEIDVAELRSIFLNNKH 98

[Close]

BLAST of Carg12096 vs. TrEMBL
Match: tr|M5VQ69|M5VQ69_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G263100 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.6e-24
Identity = 65/100 (65.00%), Postives = 79/100 (79.00%), Query Frame = 0


Query: 1   MARSFSNVKVLSALVSDGFSSALSRRGYAAASQGVASSAVKGGSVAVARSGNMLKKSGEE 60
           MARSFSN K+LSALV+DGFSS ++RRGYAA SQGVASS V+GG      S N++K SGE+
Sbjct: 1   MARSFSNAKLLSALVADGFSSTITRRGYAAGSQGVASSVVRGGGATNPTSVNVVKNSGED 60

Query: 61  KVVGSSEKVAWVPDPATGYYRPENRGDEIDVAELRSILLK 101
           K V S+ KV+WVP+P TG+Y PEN  +EID AELR+ LLK
Sbjct: 61  K-VSSASKVSWVPNPKTGFYGPENGAEEIDAAELRAALLK 99

[Close]

BLAST of Carg12096 vs. TrEMBL
Match: tr|A0A059AX49|A0A059AX49_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H01104 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.6e-24
Identity = 68/103 (66.02%), Postives = 82/103 (79.61%), Query Frame = 0


Query: 1   MARSFSNVKVLSALVSDGFSSALSRRGYAAASQGVASSAVKGGSVAVARSGNMLKKSGEE 60
           MARS SN K+ SA + DG S++++RRGYAAASQGVASS  K G+    RS  M KK+GEE
Sbjct: 1   MARSLSNAKLFSAALVDGISASIARRGYAAASQGVASSFAKTGA---TRSTVMSKKTGEE 60

Query: 61  KVVGSSEKVAWVPDPATGYYRPENRGDEIDVAELRSILLKNKN 104
           K   S+E+V+WVPDP TGYYRPENR +EIDVAELR++LLKNKN
Sbjct: 61  K-ARSTERVSWVPDPKTGYYRPENRAEEIDVAELRAMLLKNKN 99

The following BLAST results are available for this feature:

BLAST of Carg12096 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022960392.1	1.5e-45	100.00	indole-3-acetic acid-induced protein ARG2-like [Cucurbita moschata] >XP_02300470...	[more]
XP_023513499.1	3.3e-45	99.03	indole-3-acetic acid-induced protein ARG2-like [Cucurbita pepo subsp. pepo]	[more]
XP_008451558.1	4.3e-37	84.76	PREDICTED: indole-3-acetic acid-induced protein ARG2-like [Cucumis melo]	[more]
XP_022144227.1	9.4e-32	79.61	indole-3-acetic acid-induced protein ARG2 [Momordica charantia]	[more]
XP_023920362.1	2.2e-28	71.96	indole-3-acetic acid-induced protein ARG2 [Quercus suber] >POF00370.1 indole-3-a...	[more]

BLAST of Carg12096 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G02380.1	9.1e-21	56.31	senescence-associated gene 21	[more]
AT1G02820.1	1.4e-16	50.98	Late embryogenesis abundant 3 (LEA3) family protein	[more]
AT4G15910.1	3.5e-12	48.08	drought-induced 21	[more]

BLAST of Carg12096 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P32292\|ARG2_VIGRR	4.6e-22	59.80	Indole-3-acetic acid-induced protein ARG2 OS=Vigna radiata var. radiata OX=3916 ...	[more]
sp\|Q93WF6\|SAG21_ARATH	1.6e-19	56.31	Protein SENESCENCE-ASSOCIATED GENE 21, mitochondrial OS=Arabidopsis thaliana OX=...	[more]
sp\|Q9SRX6\|LEA2_ARATH	2.4e-15	50.98	Late embryogenis abundant protein 2 OS=Arabidopsis thaliana OX=3702 GN=LEA2 PE=2...	[more]
sp\|Q39644\|LEA5_CITSI	6.7e-13	47.57	Late embryogenesis abundant protein Lea5 OS=Citrus sinensis OX=2711 GN=LEA5 PE=2...	[more]
sp\|P46522\|LEA5D_GOSHI	1.5e-12	43.69	Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum OX=3635 GN=LEA5...	[more]

BLAST of Carg12096 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BRT2\|A0A1S3BRT2_CUCME	2.9e-37	84.76	indole-3-acetic acid-induced protein ARG2-like OS=Cucumis melo OX=3656 GN=LOC103...	[more]
tr\|A0A2P4L514\|A0A2P4L514_QUESU	1.4e-28	71.96	Indole-3-acetic acid-induced protein arg2 OS=Quercus suber OX=58331 GN=CFP56_717...	[more]
tr\|A0A2N9I078\|A0A2N9I078_FAGSY	1.7e-26	68.93	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS1815 PE=4 SV=1	[more]
tr\|M5VQ69\|M5VQ69_PRUPE	1.6e-24	65.00	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G263100 PE=4 SV=1	[more]
tr\|A0A059AX49\|A0A059AX49_EUCGR	1.6e-24	66.02	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H01104 PE=4 SV...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006950	response to stress

Vocabulary: **INTERPRO**
Term	Definition
IPR004926	LEA_3

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006950	response to stress
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12096-RA	Carg12096-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004926	Late embryogenesis abundant protein, LEA_3 subgroup	PFAM	PF03242	LEA_3	coord: 1..99 e-value: 1.4E-30 score: 105.8
None	No IPR available	PANTHER	PTHR33509:SF5	PROTEIN SENESCENCE-ASSOCIATED GENE 21, MITOCHONDRIAL	coord: 1..102
None	No IPR available	PANTHER	PTHR33509	FAMILY NOT NAMED	coord: 1..102

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12096	Csa7G398090	Cucumber (Chinese Long) v2	carcuB0594
Carg12096	MELO3C015995	Melon (DHL92) v3.5.1	carmeB0566
Carg12096	CSPI07G17540	Wild cucumber (PI 183967)	carcpiB0599
Carg12096	Cucsa.205500	Cucumber (Gy14) v1	carcgyB0640
Carg12096	CmaCh17G010820	Cucurbita maxima (Rimu)	carcmaB0787
Carg12096	CmaCh08G004290	Cucurbita maxima (Rimu)	carcmaB0792
Carg12096	CmoCh08G004230	Cucurbita moschata (Rifu)	carcmoB0771
Carg12096	CmoCh17G010560	Cucurbita moschata (Rifu)	carcmoB0767
Carg12096	Lsi02G024100	Bottle gourd (USVL1VR-Ls)	carlsiB511
Carg12096	Cp4.1LG17g07170	Cucurbita pepo (Zucchini)	carcpeB0803
Carg12096	Cp4.1LG12g05650	Cucurbita pepo (Zucchini)	carcpeB0801
Carg12096	CsGy7G015970	Cucumber (Gy14) v2	carcgybB0569
Carg12096	MELO3C015995.2	Melon (DHL92) v3.6.1	carmedB0572
Carg12096	CsaV3_7G029330	Cucumber (Chinese Long) v3	carcucB0601
Carg12096	Bhi09G000723	Wax gourd	carwgoB0673

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg12096	Carg07167	Silver-seed gourd	carcarB130

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12096	Cucurbita maxima (Rimu)	carcmaB0786
Carg12096	Cucurbita moschata (Rifu)	carcmoB0766
Carg12096	Watermelon (Charleston Gray)	carwcgB0547
Carg12096	Watermelon (97103) v1	carwmB0559
Carg12096	Watermelon (97103) v2	carwmbB0590