Carg12085 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12085
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Binding protein
Location	Cucurbita_argyrosperma_scaffold_037 : 1086615 .. 1087007 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGCGTTTCGGTGGGCCGTGGGCGGCGGAAGACGGTGCAGCTTGGGGCACTCGGGGGGAAGCGGCGGAATGTGTGGCAGTTCAAGGTCTCGCCGAAGCTCAGGCGACTCCGGCGGCTGCCGTCGCTGAAGAAGCTGCTTATATGGTTGAGGGATTCTTATATGAATGCGATGCTGGCGTTTGCGAGCTCTAGGGTCGTTGGTTGCGGCGGTGGTAGTGGCGATGGGGTCTGGGCCGGCGCTGGCGGAAGGGCCACGTTGAAGGAGTATGATGAGGAAATGATCACGGAGATCTACAAGTCGTTGGTGGTGGCTCAGGCGCGGTTGCCTCCGCCGGAATCTGTCCGGCCGAGTTGGGTCGGCGGCCGGTTGCCGGCTGTGGCGGAATAA

mRNA sequence

ATGGAAGGCGTTTCGGTGGGCCGTGGGCGGCGGAAGACGGTGCAGCTTGGGGCACTCGGGGGGAAGCGGCGGAATGTGTGGCAGTTCAAGGTCTCGCCGAAGCTCAGGCGACTCCGGCGGCTGCCGTCGCTGAAGAAGCTGCTTATATGGTTGAGGGATTCTTATATGAATGCGATGCTGGCGTTTGCGAGCTCTAGGGTCGTTGGTTGCGGCGGTGGTAGTGGCGATGGGGTCTGGGCCGGCGCTGGCGGAAGGGCCACGTTGAAGGAGTATGATGAGGAAATGATCACGGAGATCTACAAGTCGTTGGTGGTGGCTCAGGCGCGGTTGCCTCCGCCGGAATCTGTCCGGCCGAGTTGGGTCGGCGGCCGGTTGCCGGCTGTGGCGGAATAA

Coding sequence (CDS)

ATGGAAGGCGTTTCGGTGGGCCGTGGGCGGCGGAAGACGGTGCAGCTTGGGGCACTCGGGGGGAAGCGGCGGAATGTGTGGCAGTTCAAGGTCTCGCCGAAGCTCAGGCGACTCCGGCGGCTGCCGTCGCTGAAGAAGCTGCTTATATGGTTGAGGGATTCTTATATGAATGCGATGCTGGCGTTTGCGAGCTCTAGGGTCGTTGGTTGCGGCGGTGGTAGTGGCGATGGGGTCTGGGCCGGCGCTGGCGGAAGGGCCACGTTGAAGGAGTATGATGAGGAAATGATCACGGAGATCTACAAGTCGTTGGTGGTGGCTCAGGCGCGGTTGCCTCCGCCGGAATCTGTCCGGCCGAGTTGGGTCGGCGGCCGGTTGCCGGCTGTGGCGGAATAA

Protein sequence

MEGVSVGRGRRKTVQLGALGGKRRNVWQFKVSPKLRRLRRLPSLKKLLIWLRDSYMNAMLAFASSRVVGCGGGSGDGVWAGAGGRATLKEYDEEMITEIYKSLVVAQARLPPPESVRPSWVGGRLPAVAE

Homology

[Close]

BLAST of Carg12085 vs. NCBI nr
Match: XP_023514548.1 (uncharacterized protein LOC111778805 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 250.8 bits (639), Expect = 2.6e-63
Identity = 126/130 (96.92%), Postives = 127/130 (97.69%), Query Frame = 0


Query: 1   MEGVSVGRGRRKTVQLGALGGKRRNVWQFKVSPKLRRLRRLPSLKKLLIWLRDSYMNAML 60
           MEGV VGRGRRKTVQLGA GGKRRNVWQFKVSPKLRRLRRLPSLKKLL+WLRDSYMNAML
Sbjct: 1   MEGVLVGRGRRKTVQLGAPGGKRRNVWQFKVSPKLRRLRRLPSLKKLLVWLRDSYMNAML 60

Query: 61  AFASSRVVGCGGGSGDGVWAGAGGRATLKEYDEEMITEIYKSLVVAQARLPPPESVRPSW 120
           AFASSRVVGCGGGSGDGVW GAGGRATLKEYDEEMITEIYKSLVVAQARLPPPESVRPSW
Sbjct: 61  AFASSRVVGCGGGSGDGVWVGAGGRATLKEYDEEMITEIYKSLVVAQARLPPPESVRPSW 120

Query: 121 VGGRLPAVAE 131
           VGGRLPAVAE
Sbjct: 121 VGGRLPAVAE 130

[Close]

BLAST of Carg12085 vs. NCBI nr
Match: XP_023004877.1 (uncharacterized protein LOC111498056 [Cucurbita maxima])

HSP 1 Score: 214.9 bits (546), Expect = 1.6e-52
Identity = 111/130 (85.38%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 1   MEGVSVGRGRRKTVQLGALGGKRRNVWQFKVSPKLRRLRRLPSLKKLLIWLRDSYMNAML 60
           MEGVSVGRGRRKTVQLGA GGKRR+VWQFKV  K          KKLLIWLRDSYMNAML
Sbjct: 1   MEGVSVGRGRRKTVQLGAPGGKRRHVWQFKVLRKXXXXXXXXXXKKLLIWLRDSYMNAML 60

Query: 61  AFASSRVVGCGGGSGDGVWAGAGGRATLKEYDEEMITEIYKSLVVAQARLPPPESVRPSW 120
           A ASSRVVG GGG+GDGVW GAGGRATLKEYDEEMITEIYKSLVVAQ RLPPPESVRPSW
Sbjct: 61  ALASSRVVGSGGGTGDGVWGGAGGRATLKEYDEEMITEIYKSLVVAQGRLPPPESVRPSW 120

Query: 121 VGGRLPAVAE 131
           VGGRLPAVAE
Sbjct: 121 VGGRLPAVAE 130

[Close]

BLAST of Carg12085 vs. NCBI nr
Match: XP_023548775.1 (uncharacterized protein LOC111807331 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 170.6 bits (431), Expect = 3.4e-39
Identity = 92/128 (71.88%), Postives = 103/128 (80.47%), Query Frame = 0


Query: 5   SVGRGRRKTVQLGALGG--KRRNVWQFKVSPKLRRLRRLPSLKKLLIWLRDSYMNAMLAF 64
           SVGRGR +TVQLGA GG      +W+ K+SPKLR  RRLPSLKKLL+WLRDSY+ AMLAF
Sbjct: 27  SVGRGRPETVQLGAAGGXXXXXRLWRIKISPKLRLFRRLPSLKKLLLWLRDSYVKAMLAF 86

Query: 65  ASSRVVGCGGGSGDGVWAGAGGRATLKEYDEEMITEIYKSLVVAQARLPPPESVRPSWVG 124
           A+SRV+G G   GDG+W G  GR+TLKEYDE+MITEIY SLVVAQ RLPPPESVR   VG
Sbjct: 87  ANSRVIGSG---GDGIW-GVAGRSTLKEYDEKMITEIYNSLVVAQGRLPPPESVRLGRVG 146

Query: 125 GRLPAVAE 131
           GRLP VAE
Sbjct: 147 GRLPTVAE 150

[Close]

BLAST of Carg12085 vs. NCBI nr
Match: XP_022991267.1 (uncharacterized protein LOC111487968 [Cucurbita maxima])

HSP 1 Score: 170.2 bits (430), Expect = 4.5e-39
Identity = 91/128 (71.09%), Postives = 103/128 (80.47%), Query Frame = 0


Query: 5   SVGRGRRKTVQLGALGG--KRRNVWQFKVSPKLRRLRRLPSLKKLLIWLRDSYMNAMLAF 64
           SVGRGR +T+QLGA GG      +W+ K+SPKLR  RRLPSLKKLL+WLRDSY+ AMLAF
Sbjct: 27  SVGRGRPETIQLGAAGGXXXXXRLWRIKISPKLRLFRRLPSLKKLLLWLRDSYVKAMLAF 86

Query: 65  ASSRVVGCGGGSGDGVWAGAGGRATLKEYDEEMITEIYKSLVVAQARLPPPESVRPSWVG 124
           A+SRV+G G   GDG+W G  GR+TLKEYDE+MITEIY SLVVAQ RLPPPESVR   VG
Sbjct: 87  ANSRVIGSG---GDGIW-GVAGRSTLKEYDEKMITEIYNSLVVAQGRLPPPESVRLGRVG 146

Query: 125 GRLPAVAE 131
           GRLP VAE
Sbjct: 147 GRLPTVAE 150

[Close]

BLAST of Carg12085 vs. NCBI nr
Match: XP_022953808.1 (uncharacterized protein LOC111456226 [Cucurbita moschata])

HSP 1 Score: 169.9 bits (429), Expect = 5.9e-39
Identity = 92/128 (71.88%), Postives = 103/128 (80.47%), Query Frame = 0


Query: 5   SVGRGRRKTVQLGALGG--KRRNVWQFKVSPKLRRLRRLPSLKKLLIWLRDSYMNAMLAF 64
           SVGRGR +TVQLGA GG      +W+ K+SPKLR  RRLPSLKKLL+WLRDSY+ AMLAF
Sbjct: 27  SVGRGRPETVQLGAAGGXXXXXRLWRIKISPKLRLFRRLPSLKKLLLWLRDSYVKAMLAF 86

Query: 65  ASSRVVGCGGGSGDGVWAGAGGRATLKEYDEEMITEIYKSLVVAQARLPPPESVRPSWVG 124
           A+SRV+G G   GDG+W G  GR+TLKEYDE+MITEIY SLVVAQ RLPPPESVR   VG
Sbjct: 87  ANSRVIGSG---GDGIW-GVTGRSTLKEYDEKMITEIYNSLVVAQGRLPPPESVRLGRVG 146

Query: 125 GRLPAVAE 131
           GRLP VAE
Sbjct: 147 GRLPTVAE 150

[Close]

BLAST of Carg12085 vs. TAIR10
Match: AT3G62650.2 (unknown protein)

HSP 1 Score: 81.3 bits (199), Expect = 5.0e-16
Identity = 45/101 (44.55%), Postives = 64/101 (63.37%), Query Frame = 0


Query: 9   GRRKTVQLGALGGKRRNVWQFKVSPKLRRLRRLPSLKKLLIWLRDSYMNAMLAFASSRVV 68
           GRRK  ++     +++  W+ K+ PKLR L +  S KK L+WLRDSY+  M+  A+SRVV
Sbjct: 27  GRRKGKRVKMDPTRKKRFWRIKIVPKLRIL-KTASPKKFLVWLRDSYVKMMMRLANSRVV 86

Query: 69  GCGGGSGDGVWAGAGGRATLKEYDEEMITEIYKSLVVAQAR 110
           G  G  G G      G   +KEYDE+M+ EIYKS+++ QA+
Sbjct: 87  GSSGYGGSGF-----GSGQMKEYDEKMLVEIYKSILMVQAQ 121

[Close]

BLAST of Carg12085 vs. TAIR10
Match: AT2G47485.1 (unknown protein)

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-15
Identity = 47/102 (46.08%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 9   GRRKTVQLGALGGKRRNVWQFKVSPKLRRLRRLPSLKKLLIWLRDSYMNAMLAFASSRVV 68
           GRR   ++     ++R  W+ K+ PKLR L++  S KKLL WLRD+Y+N ML  A+SRVV
Sbjct: 25  GRRNVKRVKMDPTRKRRFWRIKIVPKLRILKK-ASPKKLLTWLRDAYVNMMLRLANSRVV 84

Query: 69  GCGGGSGDGVWAGAGGRATLKEYDEEMITEIYKSLVVAQARL 111
           G   G G+    G G     KEYDE+ + EIYKS+++AQ  L
Sbjct: 85  GSSYGYGE---YGYGSGLASKEYDEKKLVEIYKSILMAQGNL 122

[Close]

BLAST of Carg12085 vs. TrEMBL
Match: tr|A0A1S4DZ96|A0A1S4DZ96_CUCME (uncharacterized protein LOC103492779 OS=Cucumis melo OX=3656 GN=LOC103492779 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 5.8e-35
Identity = 87/130 (66.92%), Postives = 98/130 (75.38%), Query Frame = 0


Query: 5   SVGRGRRKTVQLGA--LGGKRRNVWQFKVSPKLRRLRRLPSLKKLLIWLRDSYMNAMLAF 64
           SVG  R +T QLGA         +W+ K+SPKLR  RR+PSLKKLL+WLRDSY+ AMLAF
Sbjct: 27  SVGH-RTETAQLGAAXXXXXXXRIWRIKISPKLRLFRRMPSLKKLLLWLRDSYVKAMLAF 86

Query: 65  ASSRVVGCGGG--SGDGVWAGAGGRATLKEYDEEMITEIYKSLVVAQARLPPPESVRPSW 124
           A+SRV+G G G       W GA GR+TLKEYDE+MITEIYKSLVVAQ RLPPPE VRPSW
Sbjct: 87  ANSRVIGGGSGXXXXXXXWGGA-GRSTLKEYDEKMITEIYKSLVVAQGRLPPPEPVRPSW 146

Query: 125 VGGRLPAVAE 131
            GGRLP VAE
Sbjct: 147 GGGRLPTVAE 154

[Close]

BLAST of Carg12085 vs. TrEMBL
Match: tr|A0A0A0K7Z4|A0A0A0K7Z4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G405950 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.2e-34
Identity = 86/130 (66.15%), Postives = 98/130 (75.38%), Query Frame = 0


Query: 5   SVGRGRRKTVQLGA--LGGKRRNVWQFKVSPKLRRLRRLPSLKKLLIWLRDSYMNAMLAF 64
           SVGR R  T QLGA         +W+ K+SPKLR  RR+PSLKKLL+WLRDSY+ AMLAF
Sbjct: 27  SVGR-RTDTAQLGAXXXXXXXXXIWRIKISPKLRLFRRMPSLKKLLLWLRDSYVKAMLAF 86

Query: 65  ASSRVVG--CGGGSGDGVWAGAGGRATLKEYDEEMITEIYKSLVVAQARLPPPESVRPSW 124
           A+SRV+G          +W GA GR+TLKEYDE+MITEIYKSLVVAQ RLPPPE+VRPSW
Sbjct: 87  ANSRVIGSXXXXXXXXXIWGGA-GRSTLKEYDEKMITEIYKSLVVAQGRLPPPETVRPSW 146

Query: 125 VGGRLPAVAE 131
            GGRLP VAE
Sbjct: 147 GGGRLPTVAE 154

[Close]

BLAST of Carg12085 vs. TrEMBL
Match: tr|A0A067K7J9|A0A067K7J9_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_13986 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.3e-18
Identity = 57/123 (46.34%), Postives = 81/123 (65.85%), Query Frame = 0


Query: 8   RGRRKTVQLGALGGKRRNVWQFKVSPKLRRLRRLPSLKKLLIWLRDSYMNAMLAFASSRV 67
           R R+ TV+LG+   K+R VW+ K+ PKL ++ ++ S +K  +WLRD+Y+  M+ FA+SRV
Sbjct: 29  RRRQNTVELGSTLQKKRRVWRIKIKPKL-KIFKMSSPRKFFVWLRDAYVKMMMGFANSRV 88

Query: 68  VGCGGGSGDGVWAGAGGRATLKEYDEEMITEIYKSLVVAQARLPPPESVRPSWVGGRLPA 127
           +G G G G G      G+  +KEYDE MI EIYKSL++AQ +L   E+ R   V  RLPA
Sbjct: 89  IGAGYGGGAGDGLATFGKRPVKEYDERMIIEIYKSLMMAQGQLVAREAPRFGSV-PRLPA 148

Query: 128 VAE 131
           + E
Sbjct: 149 IVE 149

[Close]

BLAST of Carg12085 vs. TrEMBL
Match: tr|A0A2P5DGM6|A0A2P5DGM6_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_252380 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 8.4e-18
Identity = 55/106 (51.89%), Postives = 76/106 (71.70%), Query Frame = 0


Query: 8   RGRRKTVQLGALGGKRRNVWQFKVSPKLRRLRRLPSLKKLLIWLRDSYMNAMLAFASSRV 67
           R RR  V+LG+   +RR VW+ +++PKL  L+R+PS KKL++WLRD+Y+  ML FA++RV
Sbjct: 30  RRRRNRVELGST--RRRRVWRIRITPKLGFLKRVPSPKKLVVWLRDAYVRLMLGFANTRV 89

Query: 68  VGCGGGS---GDGVWAGAGGRATLKEYDEEMITEIYKSLVVAQARL 111
              G G     DG+  G+ GR  LKEYD++MI EIYKSLV+AQ +L
Sbjct: 90  CSTGYGGALCSDGI--GSFGRGPLKEYDDKMIIEIYKSLVLAQGQL 131

[Close]

BLAST of Carg12085 vs. TrEMBL
Match: tr|W9RL25|W9RL25_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_007465 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.4e-17
Identity = 57/111 (51.35%), Postives = 76/111 (68.47%), Query Frame = 0


Query: 10  RRKTVQLGALGGKRRNVWQFKVSPKLRRLRRLPSLKKLLIWLRDSYMNAMLAFASSRVVG 69
           RR+   L ++  KR   W+ +++PKL  LRR+PS KKLL+WLRD+Y+  ML FA+SRV  
Sbjct: 30  RRRKRSLDSIRKKRS--WRIRIAPKLGFLRRVPSPKKLLVWLRDAYVKLMLGFANSRVCS 89

Query: 70  CGGGS---GDGVWAGAGGRATLKEYDEEMITEIYKSLVVAQARLPPPESVR 118
            G GS   GDG+  G  GR  LKEYD++MI EIYKSLV+A  +L P ++ R
Sbjct: 90  TGYGSAICGDGI--GGFGRGPLKEYDDKMIVEIYKSLVLAHGQLVPRDAAR 136

The following BLAST results are available for this feature:

BLAST of Carg12085 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023514548.1	2.6e-63	96.92	uncharacterized protein LOC111778805 [Cucurbita pepo subsp. pepo]	[more]
XP_023004877.1	1.6e-52	85.38	uncharacterized protein LOC111498056 [Cucurbita maxima]	[more]
XP_023548775.1	3.4e-39	71.88	uncharacterized protein LOC111807331 [Cucurbita pepo subsp. pepo]	[more]
XP_022991267.1	4.5e-39	71.09	uncharacterized protein LOC111487968 [Cucurbita maxima]	[more]
XP_022953808.1	5.9e-39	71.88	uncharacterized protein LOC111456226 [Cucurbita moschata]	[more]

BLAST of Carg12085 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G62650.2	5.0e-16	44.55	unknown protein	[more]
AT2G47485.1	1.1e-15	46.08	unknown protein	[more]

BLAST of Carg12085 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg12085 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DZ96\|A0A1S4DZ96_CUCME	5.8e-35	66.92	uncharacterized protein LOC103492779 OS=Cucumis melo OX=3656 GN=LOC103492779 PE=...	[more]
tr\|A0A0A0K7Z4\|A0A0A0K7Z4_CUCSA	2.2e-34	66.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G405950 PE=4 SV=1	[more]
tr\|A0A067K7J9\|A0A067K7J9_JATCU	1.3e-18	46.34	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_13986 PE=4 SV=1	[more]
tr\|A0A2P5DGM6\|A0A2P5DGM6_9ROSA	8.4e-18	51.89	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_252380 PE=4 S...	[more]
tr\|W9RL25\|W9RL25_9ROSA	1.4e-17	51.35	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_007465 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12085-RA	Carg12085-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33702:SF5	SUBFAMILY NOT NAMED	coord: 8..110
None	No IPR available	PANTHER	PTHR33702	FAMILY NOT NAMED	coord: 8..110

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12085	Cla015115	Watermelon (97103) v1	carwmB0559
Carg12085	Csa7G405950	Cucumber (Chinese Long) v2	carcuB0594
Carg12085	MELO3C015948	Melon (DHL92) v3.5.1	carmeB0566
Carg12085	ClCG09G005350	Watermelon (Charleston Gray)	carwcgB0547
Carg12085	CSPI07G17910	Wild cucumber (PI 183967)	carcpiB0599
Carg12085	Cucsa.205250	Cucumber (Gy14) v1	carcgyB0640
Carg12085	CmaCh17G010550	Cucurbita maxima (Rimu)	carcmaB0787
Carg12085	CmoCh08G004390	Cucurbita moschata (Rifu)	carcmoB0771
Carg12085	CmoCh17G010280	Cucurbita moschata (Rifu)	carcmoB0767
Carg12085	Lsi02G024460	Bottle gourd (USVL1VR-Ls)	carlsiB511
Carg12085	Cp4.1LG17g07320	Cucurbita pepo (Zucchini)	carcpeB0803
Carg12085	Cp4.1LG12g05930	Cucurbita pepo (Zucchini)	carcpeB0801
Carg12085	MELO3C015948.2	Melon (DHL92) v3.6.1	carmedB0573
Carg12085	CsaV3_7G029720	Cucumber (Chinese Long) v3	carcucB0601
Carg12085	Cla97C09G167810	Watermelon (97103) v2	carwmbB0590
Carg12085	Bhi09G000780	Wax gourd	carwgoB0674

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg12085	Carg07145	Silver-seed gourd	carcarB130

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12085	Cucurbita maxima (Rimu)	carcmaB0786
Carg12085	Cucurbita maxima (Rimu)	carcmaB0792
Carg12085	Cucurbita moschata (Rifu)	carcmoB0766