Carg12085-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAGGCGTTTCGGTGGGCCGTGGGCGGCGGAAGACGGTGCAGCTTGGGGCACTCGGGGGGAAGCGGCGGAATGTGTGGCAGTTCAAGGTCTCGCCGAAGCTCAGGCGACTCCGGCGGCTGCCGTCGCTGAAGAAGCTGCTTATATGGTTGAGGGATTCTTATATGAATGCGATGCTGGCGTTTGCGAGCTCTAGGGTCGTTGGTTGCGGCGGTGGTAGTGGCGATGGGGTCTGGGCCGGCGCTGGCGGAAGGGCCACGTTGAAGGAGTATGATGAGGAAATGATCACGGAGATCTACAAGTCGTTGGTGGTGGCTCAGGCGCGGTTGCCTCCGCCGGAATCTGTCCGGCCGAGTTGGGTCGGCGGCCGGTTGCCGGCTGTGGCGGAATAA ATGGAAGGCGTTTCGGTGGGCCGTGGGCGGCGGAAGACGGTGCAGCTTGGGGCACTCGGGGGGAAGCGGCGGAATGTGTGGCAGTTCAAGGTCTCGCCGAAGCTCAGGCGACTCCGGCGGCTGCCGTCGCTGAAGAAGCTGCTTATATGGTTGAGGGATTCTTATATGAATGCGATGCTGGCGTTTGCGAGCTCTAGGGTCGTTGGTTGCGGCGGTGGTAGTGGCGATGGGGTCTGGGCCGGCGCTGGCGGAAGGGCCACGTTGAAGGAGTATGATGAGGAAATGATCACGGAGATCTACAAGTCGTTGGTGGTGGCTCAGGCGCGGTTGCCTCCGCCGGAATCTGTCCGGCCGAGTTGGGTCGGCGGCCGGTTGCCGGCTGTGGCGGAATAA ATGGAAGGCGTTTCGGTGGGCCGTGGGCGGCGGAAGACGGTGCAGCTTGGGGCACTCGGGGGGAAGCGGCGGAATGTGTGGCAGTTCAAGGTCTCGCCGAAGCTCAGGCGACTCCGGCGGCTGCCGTCGCTGAAGAAGCTGCTTATATGGTTGAGGGATTCTTATATGAATGCGATGCTGGCGTTTGCGAGCTCTAGGGTCGTTGGTTGCGGCGGTGGTAGTGGCGATGGGGTCTGGGCCGGCGCTGGCGGAAGGGCCACGTTGAAGGAGTATGATGAGGAAATGATCACGGAGATCTACAAGTCGTTGGTGGTGGCTCAGGCGCGGTTGCCTCCGCCGGAATCTGTCCGGCCGAGTTGGGTCGGCGGCCGGTTGCCGGCTGTGGCGGAATAA MEGVSVGRGRRKTVQLGALGGKRRNVWQFKVSPKLRRLRRLPSLKKLLIWLRDSYMNAMLAFASSRVVGCGGGSGDGVWAGAGGRATLKEYDEEMITEIYKSLVVAQARLPPPESVRPSWVGGRLPAVAE
BLAST of Carg12085-RA vs. NCBI nr
Match: XP_023514548.1 (uncharacterized protein LOC111778805 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 250.8 bits (639), Expect = 2.6e-63 Identity = 126/130 (96.92%), Postives = 127/130 (97.69%), Query Frame = 0
BLAST of Carg12085-RA vs. NCBI nr
Match: XP_023004877.1 (uncharacterized protein LOC111498056 [Cucurbita maxima]) HSP 1 Score: 214.9 bits (546), Expect = 1.6e-52 Identity = 111/130 (85.38%), Postives = 113/130 (86.92%), Query Frame = 0
BLAST of Carg12085-RA vs. NCBI nr
Match: XP_023548775.1 (uncharacterized protein LOC111807331 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 170.6 bits (431), Expect = 3.4e-39 Identity = 92/128 (71.88%), Postives = 103/128 (80.47%), Query Frame = 0
BLAST of Carg12085-RA vs. NCBI nr
Match: XP_022991267.1 (uncharacterized protein LOC111487968 [Cucurbita maxima]) HSP 1 Score: 170.2 bits (430), Expect = 4.5e-39 Identity = 91/128 (71.09%), Postives = 103/128 (80.47%), Query Frame = 0
BLAST of Carg12085-RA vs. NCBI nr
Match: XP_022953808.1 (uncharacterized protein LOC111456226 [Cucurbita moschata]) HSP 1 Score: 169.9 bits (429), Expect = 5.9e-39 Identity = 92/128 (71.88%), Postives = 103/128 (80.47%), Query Frame = 0
BLAST of Carg12085-RA vs. TAIR10
Match: AT3G62650.2 (unknown protein) HSP 1 Score: 81.3 bits (199), Expect = 5.0e-16 Identity = 45/101 (44.55%), Postives = 64/101 (63.37%), Query Frame = 0
BLAST of Carg12085-RA vs. TAIR10
Match: AT2G47485.1 (unknown protein) HSP 1 Score: 80.1 bits (196), Expect = 1.1e-15 Identity = 47/102 (46.08%), Postives = 64/102 (62.75%), Query Frame = 0
BLAST of Carg12085-RA vs. TrEMBL
Match: tr|A0A1S4DZ96|A0A1S4DZ96_CUCME (uncharacterized protein LOC103492779 OS=Cucumis melo OX=3656 GN=LOC103492779 PE=4 SV=1) HSP 1 Score: 156.0 bits (393), Expect = 5.8e-35 Identity = 87/130 (66.92%), Postives = 98/130 (75.38%), Query Frame = 0
BLAST of Carg12085-RA vs. TrEMBL
Match: tr|A0A0A0K7Z4|A0A0A0K7Z4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G405950 PE=4 SV=1) HSP 1 Score: 154.1 bits (388), Expect = 2.2e-34 Identity = 86/130 (66.15%), Postives = 98/130 (75.38%), Query Frame = 0
BLAST of Carg12085-RA vs. TrEMBL
Match: tr|A0A067K7J9|A0A067K7J9_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_13986 PE=4 SV=1) HSP 1 Score: 101.7 bits (252), Expect = 1.3e-18 Identity = 57/123 (46.34%), Postives = 81/123 (65.85%), Query Frame = 0
BLAST of Carg12085-RA vs. TrEMBL
Match: tr|A0A2P5DGM6|A0A2P5DGM6_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_252380 PE=4 SV=1) HSP 1 Score: 99.0 bits (245), Expect = 8.4e-18 Identity = 55/106 (51.89%), Postives = 76/106 (71.70%), Query Frame = 0
BLAST of Carg12085-RA vs. TrEMBL
Match: tr|W9RL25|W9RL25_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_007465 PE=4 SV=1) HSP 1 Score: 98.2 bits (243), Expect = 1.4e-17 Identity = 57/111 (51.35%), Postives = 76/111 (68.47%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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