Carg11966 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11966
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	F-box protein SKIP1
Location	Cucurbita_argyrosperma_scaffold_037 : 147969 .. 150064 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAGCCATCGTGGGCGGAGCTGACGCAGGAGTGCCTAACCAACATCTTCTCTCGGCTAACCATCGAGCAGCGGTGGCGTGGACCCATGCTTGTCTGCAAGCTCTGGCTCCGCGCCGCCACCGACTCCTCTCTCTTTTCCCACTTCGACCTCGAACCCAGGTTCGACTCCACCCCCACCGAGTCCCCAGCCTGGTGGTCGCCCCAATTCGAGGCCAAAATTGATTCCATGCTCCGATCTGCCGTCCAATGGAGCCTTGGATCTCTTTCCCTTATTCGGATCAGACACTGCTCCGATTCATCTCTCCAATTGGTCGCTCAAGGGTAATTAATTCACTTCTTCTTCTTTAAATTTTAATTATAATTATCATGAACCTTTTATTGTTCAATTAGGGTAAAAGATTTCCTTCATTGTTTGGTGTTTTTCCCTCTTCAGCAAGCACTTTGCTCGTGAATTTTATGATCAAGTCAATTAAAAACTATCACTAGATCTTTGCATCTGTTTTAACCAATCAATGTGCAGTTCTTTTAGAATAAAAATTGTTGGATAACACATTCAAGATAGGAACGAACGATTTCTTGTTCTGGAAACACATCCTTTTCTTTATTCTCTTTGGTTGGTCCTTTTCTTGTTAGTTGGATATGCAAAACTGTAGCATAACTGTGAATTTTTATATAAATGTTGCTATAATATCACGAGGGATCGAAGCATTCCTTACAAGAGTGTGGAAATCTCTCTCTGCGTTTTATGAACCTCGTAGATATTGTCCTCTTTGAGCTTTTCCTCAAGGTTTTACAACGCGTCTGCTAGGGAGAGGTTTCCACACCCTTATATGGAATGCTTCGTTCCTCTCTCTCCAACCAATGTGGTATCTCACATATTAAGATAGATCGTTGTCCAATTACGTGGTCGATCCACTATGGATCATTTGGCAAGAGCTTGTTTGGATTGACCTTTTAAGGGTTTTAATAAATGTTAATCCAAAAGACTCTGGTCATGAGGTTTGGGTTTTGGATAAAATTGATGGCCTTCAACTTACTTACATTTTAGGTGTCCAAACCTTGAGGTTCTTTCCATCAAGAGCTGCGCCAATGTTACTGATAGATCAATGGCTAAGATTGCTCTTGGTTGCCAAAAGCTCCAGGAAGTAGATATCAGCTACTGTCATGAAATCTCGAACGTATCTTTGTCGTTAATCGGCAAGCATTGTCCAAATATCAAGACTCTAAAACGAAACTTTTTCAACACACTAGATCCTTCCCAACAAAAAGGAATTGTCCCTGACAGTTATCTAAATGCTTGCCCACAAGATGTGGATTCAGAAGCTGTGGCTATTGCAAAATTCATGCCCAACTTGGAGCACCTTCAACTCTGTTTCTCTAAACTCTCTGCTAAAGCTCTAACTTTGATCTGTAAAGGATGTCCAAATCTCAAGTACTTGGATCTGTTTGGGTGTGTGAACTTGACAAGTCGTGATATCGTGAATGCTACGTCGAGTCTGGAGAATTTGGAGATTAGGAAACCAAATTTCTATATTCCGAGGTCGGTCTTTCACACCGAGAGGTATGGCCATTGGAGGTTATACGACGAGAGATTCCAAACAGATATTTTCCGAATTTGATGGAGGTTACAGTCAAATGCAGGGTTAATACTCTCCTAATTCGATGTGTATCAGTGTTGTTTTACTAAGTTGTACAGTTCTTAATTTAGCTGTTTTGTTTCATGACAGTCCCAAATCTGTACTCTCTTTTGAATTTGTATGGTGGATTGATGCGACATAAGTTTTGTATAACTTATAGTTAACAGCAAATGGGTTTCAGGTTTAACCTTGTACATCCCTTCATGTTATTGTTTCCAAGATTGTTGGAACCATTTTTCTCTGTTCCTCTGAAACTCTTATCTCTCTCCATCAATATCACTGCTCTAAACAATTTTTTATTTCTAAAGCTTTGGTTTATTATATTTGAAATCCTACCTCTCGAGGTGGTCTTAGGATTAGGGAACGCTCAAAGCTCTTGTCTCCTTGATTTTTACGGGTTAAATTACAAGTTTAGTTTATAAACTTTCAGGTTTGCGTCTATTTGGTCACTAAA

mRNA sequence

ATGGCAGAGCCATCGTGGGCGGAGCTGACGCAGGAGTGCCTAACCAACATCTTCTCTCGGCTAACCATCGAGCAGCGGTGGCGTGGACCCATGCTTGTCTGCAAGCTCTGGCTCCGCGCCGCCACCGACTCCTCTCTCTTTTCCCACTTCGACCTCGAACCCAGGTTCGACTCCACCCCCACCGAGTCCCCAGCCTGGTGGTCGCCCCAATTCGAGGCCAAAATTGATTCCATGCTCCGATCTGCCGTCCAATGGAGCCTTGGATCTCTTTCCCTTATTCGGATCAGACACTGCTCCGATTCATCTCTCCAATTGGTCGCTCAAGGGTGTCCAAACCTTGAGGTTCTTTCCATCAAGAGCTGCGCCAATGTTACTGATAGATCAATGGCTAAGATTGCTCTTGGTTGCCAAAAGCTCCAGGAAGTAGATATCAGCTACTGTCATGAAATCTCGAACGTATCTTTGTCGTTAATCGGCAAGCATTGTCCAAATATCAAGACTCTAAAACGAAACTTTTTCAACACACTAGATCCTTCCCAACAAAAAGGAATTGTCCCTGACAGTTATCTAAATGCTTGCCCACAAGATGTGGATTCAGAAGCTGTGGCTATTGCAAAATTCATGCCCAACTTGGAGCACCTTCAACTCTGTTTCTCTAAACTCTCTGCTAAAGCTCTAACTTTGATCTGTAAAGGATGTCCAAATCTCAAGTACTTGGATCTGTTTGGGTGTGTGAACTTGACAAGTCGTGATATCGTGAATGCTACGTCGAGTCTGGAGAATTTGGAGATTAGGAAACCAAATTTCTATATTCCGAGGTCGGTCTTTCACACCGAGAGGTATGGCCATTGGAGGTTATACGACGAGAGATTCCAAACAGATATTTTCCGAATTTGATGGAGGTTACAGTCAAATGCAGGGTTAATACTCTCCTAATTCGATGTGTATCAGTGTTGTTTTACTAAGTTGTACAGTTCTTAATTTAGCTGTTTTGTTTCATGACAGTCCCAAATCTGTACTCTCTTTTGAATTTGTATGGTGGATTGATGCGACATAAGTTTTGTATAACTTATAGTTAACAGCAAATGGGTTTCAGGTTTAACCTTGTACATCCCTTCATGTTATTGTTTCCAAGATTGTTGGAACCATTTTTCTCTGTTCCTCTGAAACTCTTATCTCTCTCCATCAATATCACTGCTCTAAACAATTTTTTATTTCTAAAGCTTTGGTTTATTATATTTGAAATCCTACCTCTCGAGGTGGTCTTAGGATTAGGGAACGCTCAAAGCTCTTGTCTCCTTGATTTTTACGGGTTAAATTACAAGTTTAGTTTATAAACTTTCAGGTTTGCGTCTATTTGGTCACTAAA

Coding sequence (CDS)

ATGGCAGAGCCATCGTGGGCGGAGCTGACGCAGGAGTGCCTAACCAACATCTTCTCTCGGCTAACCATCGAGCAGCGGTGGCGTGGACCCATGCTTGTCTGCAAGCTCTGGCTCCGCGCCGCCACCGACTCCTCTCTCTTTTCCCACTTCGACCTCGAACCCAGGTTCGACTCCACCCCCACCGAGTCCCCAGCCTGGTGGTCGCCCCAATTCGAGGCCAAAATTGATTCCATGCTCCGATCTGCCGTCCAATGGAGCCTTGGATCTCTTTCCCTTATTCGGATCAGACACTGCTCCGATTCATCTCTCCAATTGGTCGCTCAAGGGTGTCCAAACCTTGAGGTTCTTTCCATCAAGAGCTGCGCCAATGTTACTGATAGATCAATGGCTAAGATTGCTCTTGGTTGCCAAAAGCTCCAGGAAGTAGATATCAGCTACTGTCATGAAATCTCGAACGTATCTTTGTCGTTAATCGGCAAGCATTGTCCAAATATCAAGACTCTAAAACGAAACTTTTTCAACACACTAGATCCTTCCCAACAAAAAGGAATTGTCCCTGACAGTTATCTAAATGCTTGCCCACAAGATGTGGATTCAGAAGCTGTGGCTATTGCAAAATTCATGCCCAACTTGGAGCACCTTCAACTCTGTTTCTCTAAACTCTCTGCTAAAGCTCTAACTTTGATCTGTAAAGGATGTCCAAATCTCAAGTACTTGGATCTGTTTGGGTGTGTGAACTTGACAAGTCGTGATATCGTGAATGCTACGTCGAGTCTGGAGAATTTGGAGATTAGGAAACCAAATTTCTATATTCCGAGGTCGGTCTTTCACACCGAGAGGTATGGCCATTGGAGGTTATACGACGAGAGATTCCAAACAGATATTTTCCGAATTTGA

Protein sequence

MAEPSWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTPTESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVLSIKSCANVTDRSMAKIALGCQKLQEVDISYCHEISNVSLSLIGKHCPNIKTLKRNFFNTLDPSQQKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLDLFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI

Homology

[Close]

BLAST of Carg11966 vs. NCBI nr
Match: XP_022946543.1 (F-box protein SKIP1-like [Cucurbita moschata])

HSP 1 Score: 488.8 bits (1257), Expect = 1.3e-134
Identity = 297/298 (99.66%), Postives = 298/298 (100.00%), Query Frame = 0


Query: 1   MAEPSWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTP 60
           MAEPSWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTP
Sbjct: 1   MAEPSWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTP 60

Query: 61  TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVXXXXX 120
           TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVXXXXX
Sbjct: 61  TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNFFNTLDPSQ 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNFFNTLDPSQ
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNFFNTLDPSQ 180

Query: 181 QKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLD 240
           QKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLD
Sbjct: 181 QKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLD 240

Query: 241 LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 299
           LFGCVNLTSRDIVNATS+LENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI
Sbjct: 241 LFGCVNLTSRDIVNATSNLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 298

[Close]

BLAST of Carg11966 vs. NCBI nr
Match: XP_023545430.1 (F-box protein SKIP1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 483.0 bits (1242), Expect = 7.2e-133
Identity = 294/298 (98.66%), Postives = 297/298 (99.66%), Query Frame = 0


Query: 1   MAEPSWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTP 60
           MAEPSWAELTQECLTNIFSRLT EQRWRGPMLVCKLWLRAATDSSLFSHF+LEPRFDSTP
Sbjct: 1   MAEPSWAELTQECLTNIFSRLTTEQRWRGPMLVCKLWLRAATDSSLFSHFNLEPRFDSTP 60

Query: 61  TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVXXXXX 120
           TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVXXXXX
Sbjct: 61  TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNFFNTLDPSQ 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNFFNTLDPSQ
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNFFNTLDPSQ 180

Query: 181 QKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLD 240
           QKGIVPDSYL+ACPQDVDSEAVAIAKFMPNLEHL+LCFSKLSAKALTLICKGCPNLKYLD
Sbjct: 181 QKGIVPDSYLSACPQDVDSEAVAIAKFMPNLEHLELCFSKLSAKALTLICKGCPNLKYLD 240

Query: 241 LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 299
           LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI
Sbjct: 241 LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 298

[Close]

BLAST of Carg11966 vs. NCBI nr
Match: XP_022999743.1 (F-box protein SKIP1-like [Cucurbita maxima])

HSP 1 Score: 481.9 bits (1239), Expect = 1.6e-132
Identity = 293/298 (98.32%), Postives = 296/298 (99.33%), Query Frame = 0


Query: 1   MAEPSWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTP 60
           MAE SWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDL+PRFDSTP
Sbjct: 1   MAEASWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLQPRFDSTP 60

Query: 61  TESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVXXXXX 120
           TESPAWWSPQFE KIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVXXXXX
Sbjct: 61  TESPAWWSPQFETKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNFFNTLDPSQ 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNFFNTLDPSQ
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNFFNTLDPSQ 180

Query: 181 QKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLD 240
           QKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHL+LCFSK+SAKALTLICKGCPNLKYLD
Sbjct: 181 QKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLELCFSKVSAKALTLICKGCPNLKYLD 240

Query: 241 LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 299
           LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI
Sbjct: 241 LFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 298

[Close]

BLAST of Carg11966 vs. NCBI nr
Match: XP_022158176.1 (F-box protein SKIP1-like [Momordica charantia])

HSP 1 Score: 428.7 bits (1101), Expect = 1.6e-116
Identity = 255/297 (85.86%), Postives = 269/297 (90.57%), Query Frame = 0


Query: 2   AEPSWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTPT 61
           A P+WAELT ECLTNI SRL++EQRWRGPMLVCKLW RAAT SSLFS FDLEPRFDS PT
Sbjct: 8   ASPAWAELTHECLTNIVSRLSVEQRWRGPMLVCKLWFRAATYSSLFSEFDLEPRFDSAPT 67

Query: 62  ESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVXXXXXX 121
           ESPAWWSP+F+ KIDSMLRS + WS GSLSLIRIRHCSD SL LV Q CPNLEV      
Sbjct: 68  ESPAWWSPEFQTKIDSMLRSVLDWSHGSLSLIRIRHCSDLSLHLVPQRCPNLEVLSIKSC 127

Query: 122 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNFFNTLDPSQQ 181
            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KRNFFNTLDPSQ 
Sbjct: 128 PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKRNFFNTLDPSQH 187

Query: 182 KGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLDL 241
            GIVP+ YLNACPQDVDSEA AIAKFMPNLEHL+LCFSKL+AKAL+LIC+GCPNLKYLDL
Sbjct: 188 TGIVPEDYLNACPQDVDSEAAAIAKFMPNLEHLELCFSKLTAKALSLICEGCPNLKYLDL 247

Query: 242 FGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 299
           FGCVNLTSR+I NAT+SLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTD+FRI
Sbjct: 248 FGCVNLTSRNIANATTSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDVFRI 304

[Close]

BLAST of Carg11966 vs. NCBI nr
Match: XP_004144728.1 (PREDICTED: F-box protein SKIP1-like [Cucumis sativus] >KGN61056.1 hypothetical protein Csa_2G036050 [Cucumis sativus])

HSP 1 Score: 421.0 bits (1081), Expect = 3.3e-114
Identity = 267/299 (89.30%), Postives = 279/299 (93.31%), Query Frame = 0


Query: 1   MAEPS-WAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDST 60
           MAEPS WAELT ECLTNI SRLT+EQRWRGPMLVCK W RAATD SLFSHFDLE RF+S 
Sbjct: 1   MAEPSPWAELTHECLTNILSRLTMEQRWRGPMLVCKHWFRAATDPSLFSHFDLEKRFESA 60

Query: 61  PTESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVXXXX 120
           PTE PAWW P+FE KIDSMLRSAV+WSLGSLS+IRIRHCSDSSL LVAQGCPNLEVXXXX
Sbjct: 61  PTELPAWWLPEFETKIDSMLRSAVRWSLGSLSVIRIRHCSDSSLDLVAQGCPNLEVXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNFFNTLDPS 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RNFFN LDPS
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNFFNNLDPS 180

Query: 181 QQKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYL 240
           Q KGIVPD+YL+A PQDVDSEA AIAKFM NLE+L+L FSKLSAKALTLIC+GCPNLKYL
Sbjct: 181 QHKGIVPDNYLDARPQDVDSEAAAIAKFMHNLEYLELGFSKLSAKALTLICEGCPNLKYL 240

Query: 241 DLFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 299
           DLFGCVNLTSRDI+NATSSLE+LEIRKPNFYIPRSVFHTERY HWRLYDERFQTDIFRI
Sbjct: 241 DLFGCVNLTSRDIMNATSSLEHLEIRKPNFYIPRSVFHTERYDHWRLYDERFQTDIFRI 299

[Close]

BLAST of Carg11966 vs. TAIR10
Match: AT5G57900.1 (SKP1 interacting partner 1)

HSP 1 Score: 251.5 bits (641), Expect = 6.4e-67
Identity = 141/296 (47.64%), Postives = 167/296 (56.42%), Query Frame = 0


Query: 6   WAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTPTESPA 65
           W  L  E L NI SRLTI++ W GPM V K WL    D  L+S FDLEP FDS P ES  
Sbjct: 8   WGGLAPEILINIISRLTIQELWTGPMFVQKSWLTVCRDPYLWSIFDLEPWFDSYP-ESTH 67

Query: 66  WWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVXXXXXXXXXX 125
            WSP+FE K+D MLRS V WS G L+ IR+RHCSD +L   A  CPNL+V          
Sbjct: 68  LWSPEFEQKVDLMLRSVVDWSEGGLTKIRVRHCSDHALSYAADRCPNLQVLAIRSSPNVT 127

Query: 126 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNFFNTLDPSQQKGIV 185
                                                      KRN  +    S+  G V
Sbjct: 128 DASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPNLRILKRNLMDW--SSRHIGSV 187

Query: 186 PDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLDLFGCV 245
           P  YL+ACPQD D+EA AI K M NLEHL++ FS+LS K L  IC+GCP L+YLDLFGCV
Sbjct: 188 PTEYLDACPQDGDTEADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPKLEYLDLFGCV 247

Query: 246 NLTSRDIVNATSSLENL-EIRKPNFYIPRS--VFHTERYGHWRLYDERFQTDIFRI 299
           +L+SRDI +  S L+ L E++KP+ Y+PRS  V  TERYGHWRLYDERF     RI
Sbjct: 248 HLSSRDITSNVSRLKWLKEVKKPDVYVPRSGDVAQTERYGHWRLYDERFDIQAMRI 300

[Close]

BLAST of Carg11966 vs. TAIR10
Match: AT4G30640.1 (RNI-like superfamily protein)

HSP 1 Score: 203.4 bits (516), Expect = 2.0e-52
Identity = 164/283 (57.95%), Postives = 197/283 (69.61%), Query Frame = 0


Query: 4   PSWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTPTES 63
           P W+ELT+ECL +IFSRL+ EQRW GPMLV K W+ A  D +L + FDLE RF S P ES
Sbjct: 18  PDWSELTRECLLDIFSRLSQEQRWIGPMLVSKNWMNACYDPTLNTIFDLETRFLSFP-ES 77

Query: 64  PAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVXXXXXXXX 123
             WW+P+FE K+DS LRS V  S G L+ IRIRHC++ SL   A+ CPNLEV        
Sbjct: 78  INWWTPEFEDKVDSFLRSVVDRSEGGLTEIRIRHCTERSLSYAAERCPNLEVLWIKNCPN 137

Query: 124 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNFFNTLDPSQQKG 183
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRN    L PS    
Sbjct: 138 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNLLPRLGPSLPTI 197

Query: 184 IVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLDLFG 243
           + P  YL   P+  + EA  I K+M  L+HL++ +S L+A+ L  +CKGC NL+Y+DL G
Sbjct: 198 VAPLDYLATFPRYGNIEARIIGKYMTQLKHLEIRYSTLTARGLDSVCKGCSNLEYMDLRG 257

Query: 244 CVNLTSRDIVNATSSLENL-EIRKPNFYIPRSVFHTERYGHWR 286
           C++LT  DI   TS L+NL EI KP+F  P +V    R G+ R
Sbjct: 258 CISLTRSDINTNTSGLKNLTEIIKPDFNPPIAVLRVPRPGNPR 299

[Close]

BLAST of Carg11966 vs. TAIR10
Match: AT5G52480.1 (RNI-like superfamily protein)

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-09
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 196 DVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLDLFGCVNL 248
           D D +A+AIA+ MP L HLQLC +KL+   L  I  GCP+L++LDL  C+NL
Sbjct: 119 DDDHDAIAIAESMPKLRHLQLCGNKLTKTGLNAILDGCPHLEHLDLRQCINL 170

[Close]

BLAST of Carg11966 vs. TAIR10
Match: AT4G05475.1 (RNI-like superfamily protein)

HSP 1 Score: 55.8 bits (133), Expect = 5.1e-08
Identity = 61/266 (22.93%), Postives = 92/266 (34.59%), Query Frame = 0


Query: 5   SWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTPTESP 64
           +W +L  E  T+I  RL++         +C+ W R   D S++   +L            
Sbjct: 39  NWVDLPPELTTSILLRLSVTDILDNARKLCRAWRRICKDPSMWRKINLRDCL-------- 98

Query: 65  AWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRH-CSDSSLQLVAQGCPNLEVXXXXXXXX 124
                 +E   +SM R  V  S G L  I I H  SDS L  +     NL+         
Sbjct: 99  -----MYEFDFESMCRHIVDLSQGGLLEINIEHFVSDSLLSYIVDRSCNLK-----SLGI 158

Query: 125 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNFFNTLDPSQQKG 184
                                                        K    N+L       
Sbjct: 159 SIYEPMTNKGVMNGIEKLPLLETLVIFHSSIKLDLKAIGHACPQLKTLKLNSLGSELAHD 218

Query: 185 IVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNL-KYLDLF 244
           I    Y+     + D +A+AIA+ MP L HLQL  + L+   L  I  GCP+L ++LD+ 
Sbjct: 219 ISQVGYIPLL--ECDDDALAIAESMPKLRHLQLMGNGLTNTGLNAILDGCPHLEEHLDVR 278

Query: 245 GCVNLTSRDIVNATSSLENLEIRKPN 269
            C N+     +         E+R+P+
Sbjct: 279 KCFNINLVGNLEKRCMKRIKELRRPH 284

[Close]

BLAST of Carg11966 vs. TAIR10
Match: AT4G05460.1 (RNI-like superfamily protein)

HSP 1 Score: 53.1 bits (126), Expect = 3.3e-07
Identity = 29/59 (49.15%), Postives = 37/59 (62.71%), Query Frame = 0


Query: 190 LNACPQ-DVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLDLFGCVNL 248
           LN  PQ + D +A+AIA+ MP L HLQLC + LS   L  I   C NL++LDL  C N+
Sbjct: 172 LNKHPQKENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFNV 230

[Close]

BLAST of Carg11966 vs. Swiss-Prot
Match: sp|Q9FDX1|SKIP1_ARATH (F-box protein SKIP1 OS=Arabidopsis thaliana OX=3702 GN=SKIP1 PE=1 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.1e-65
Identity = 141/296 (47.64%), Postives = 167/296 (56.42%), Query Frame = 0


Query: 6   WAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTPTESPA 65
           W  L  E L NI SRLTI++ W GPM V K WL    D  L+S FDLEP FDS P ES  
Sbjct: 8   WGGLAPEILINIISRLTIQELWTGPMFVQKSWLTVCRDPYLWSIFDLEPWFDSYP-ESTH 67

Query: 66  WWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVXXXXXXXXXX 125
            WSP+FE K+D MLRS V WS G L+ IR+RHCSD +L   A  CPNL+V          
Sbjct: 68  LWSPEFEQKVDLMLRSVVDWSEGGLTKIRVRHCSDHALSYAADRCPNLQVLAIRSSPNVT 127

Query: 126 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNFFNTLDPSQQKGIV 185
                                                      KRN  +    S+  G V
Sbjct: 128 DASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPNLRILKRNLMDW--SSRHIGSV 187

Query: 186 PDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLDLFGCV 245
           P  YL+ACPQD D+EA AI K M NLEHL++ FS+LS K L  IC+GCP L+YLDLFGCV
Sbjct: 188 PTEYLDACPQDGDTEADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPKLEYLDLFGCV 247

Query: 246 NLTSRDIVNATSSLENL-EIRKPNFYIPRS--VFHTERYGHWRLYDERFQTDIFRI 299
           +L+SRDI +  S L+ L E++KP+ Y+PRS  V  TERYGHWRLYDERF     RI
Sbjct: 248 HLSSRDITSNVSRLKWLKEVKKPDVYVPRSGDVAQTERYGHWRLYDERFDIQAMRI 300

[Close]

BLAST of Carg11966 vs. Swiss-Prot
Match: sp|Q9M096|FBL19_ARATH (Putative F-box/LRR-repeat protein 19 OS=Arabidopsis thaliana OX=3702 GN=FBL19 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 3.6e-51
Identity = 164/283 (57.95%), Postives = 197/283 (69.61%), Query Frame = 0


Query: 4   PSWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTPTES 63
           P W+ELT+ECL +IFSRL+ EQRW GPMLV K W+ A  D +L + FDLE RF S P ES
Sbjct: 18  PDWSELTRECLLDIFSRLSQEQRWIGPMLVSKNWMNACYDPTLNTIFDLETRFLSFP-ES 77

Query: 64  PAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVXXXXXXXX 123
             WW+P+FE K+DS LRS V  S G L+ IRIRHC++ SL   A+ CPNLEV        
Sbjct: 78  INWWTPEFEDKVDSFLRSVVDRSEGGLTEIRIRHCTERSLSYAAERCPNLEVLWIKNCPN 137

Query: 124 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNFFNTLDPSQQKG 183
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRN    L PS    
Sbjct: 138 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNLLPRLGPSLPTI 197

Query: 184 IVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLDLFG 243
           + P  YL   P+  + EA  I K+M  L+HL++ +S L+A+ L  +CKGC NL+Y+DL G
Sbjct: 198 VAPLDYLATFPRYGNIEARIIGKYMTQLKHLEIRYSTLTARGLDSVCKGCSNLEYMDLRG 257

Query: 244 CVNLTSRDIVNATSSLENL-EIRKPNFYIPRSVFHTERYGHWR 286
           C++LT  DI   TS L+NL EI KP+F  P +V    R G+ R
Sbjct: 258 CISLTRSDINTNTSGLKNLTEIIKPDFNPPIAVLRVPRPGNPR 299

[Close]

BLAST of Carg11966 vs. Swiss-Prot
Match: sp|Q9S9V9|FBL23_ARATH (Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana OX=3702 GN=FBL23 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.2e-07
Identity = 61/250 (24.40%), Postives = 89/250 (35.60%), Query Frame = 0


Query: 5   SWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTPTESP 64
           +WAEL  +  ++I  RL   +  +    VCK W R   D S++   D++ R D       
Sbjct: 180 NWAELPSKLTSSILLRLGAIEILQNAQKVCKPWHRVCKDPSMWRKIDIDNRNDRA----- 239

Query: 65  AWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSL-QLVAQGCPNLEVXXXXXXXX 124
                 F+  ++SM R AV  S G L  I I +   + L   +A    NL+         
Sbjct: 240 -----AFKYDLESMCRHAVDRSHGGLIEIEIWYYGTNDLIMYIADRSSNLKSLGLVRCFP 299

Query: 125 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNFFNTLDPSQQKG 184
                                                             +  D  +   
Sbjct: 300 ITDEGVAKAVSKVPLLEYLEVSYCLFSGE---------------------SLRDIGRSCP 359

Query: 185 IVPDSYLNACPQ------DVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLK 244
            +    LN  P+        D  A AIA+ MP L HLQL  + L+ K L  I  GCP+L+
Sbjct: 360 NLKTLKLNRAPEIMFSNSGFDDNAKAIAESMPELRHLQLLGNGLTNKGLNAILDGCPHLE 398

Query: 245 YLDLFGCVNL 248
           +LDL  C N+
Sbjct: 420 HLDLRQCFNI 398

[Close]

BLAST of Carg11966 vs. Swiss-Prot
Match: sp|Q9M0U7|FB221_ARATH (Putative F-box protein At4g05475 OS=Arabidopsis thaliana OX=3702 GN=At4g05475 PE=4 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 9.3e-07
Identity = 61/266 (22.93%), Postives = 92/266 (34.59%), Query Frame = 0


Query: 5   SWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTPTESP 64
           +W +L  E  T+I  RL++         +C+ W R   D S++   +L            
Sbjct: 39  NWVDLPPELTTSILLRLSVTDILDNARKLCRAWRRICKDPSMWRKINLRDCL-------- 98

Query: 65  AWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRH-CSDSSLQLVAQGCPNLEVXXXXXXXX 124
                 +E   +SM R  V  S G L  I I H  SDS L  +     NL+         
Sbjct: 99  -----MYEFDFESMCRHIVDLSQGGLLEINIEHFVSDSLLSYIVDRSCNLK-----SLGI 158

Query: 125 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNFFNTLDPSQQKG 184
                                                        K    N+L       
Sbjct: 159 SIYEPMTNKGVMNGIEKLPLLETLVIFHSSIKLDLKAIGHACPQLKTLKLNSLGSELAHD 218

Query: 185 IVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNL-KYLDLF 244
           I    Y+     + D +A+AIA+ MP L HLQL  + L+   L  I  GCP+L ++LD+ 
Sbjct: 219 ISQVGYIPLL--ECDDDALAIAESMPKLRHLQLMGNGLTNTGLNAILDGCPHLEEHLDVR 278

Query: 245 GCVNLTSRDIVNATSSLENLEIRKPN 269
            C N+     +         E+R+P+
Sbjct: 279 KCFNINLVGNLEKRCMKRIKELRRPH 284

[Close]

BLAST of Carg11966 vs. Swiss-Prot
Match: sp|Q9M0U9|SKI19_ARATH (F-box protein SKIP19 OS=Arabidopsis thaliana OX=3702 GN=SKIP19 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.0e-06
Identity = 29/59 (49.15%), Postives = 37/59 (62.71%), Query Frame = 0


Query: 190 LNACPQ-DVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLDLFGCVNL 248
           LN  PQ + D +A+AIA+ MP L HLQLC + LS   L  I   C NL++LDL  C N+
Sbjct: 172 LNKHPQKENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFNV 230

[Close]

BLAST of Carg11966 vs. TrEMBL
Match: tr|A0A0A0LM72|A0A0A0LM72_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G036050 PE=4 SV=1)

HSP 1 Score: 421.0 bits (1081), Expect = 2.2e-114
Identity = 267/299 (89.30%), Postives = 279/299 (93.31%), Query Frame = 0


Query: 1   MAEPS-WAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDST 60
           MAEPS WAELT ECLTNI SRLT+EQRWRGPMLVCK W RAATD SLFSHFDLE RF+S 
Sbjct: 1   MAEPSPWAELTHECLTNILSRLTMEQRWRGPMLVCKHWFRAATDPSLFSHFDLEKRFESA 60

Query: 61  PTESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVXXXX 120
           PTE PAWW P+FE KIDSMLRSAV+WSLGSLS+IRIRHCSDSSL LVAQGCPNLEVXXXX
Sbjct: 61  PTELPAWWLPEFETKIDSMLRSAVRWSLGSLSVIRIRHCSDSSLDLVAQGCPNLEVXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNFFNTLDPS 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RNFFN LDPS
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNFFNNLDPS 180

Query: 181 QQKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYL 240
           Q KGIVPD+YL+A PQDVDSEA AIAKFM NLE+L+L FSKLSAKALTLIC+GCPNLKYL
Sbjct: 181 QHKGIVPDNYLDARPQDVDSEAAAIAKFMHNLEYLELGFSKLSAKALTLICEGCPNLKYL 240

Query: 241 DLFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 299
           DLFGCVNLTSRDI+NATSSLE+LEIRKPNFYIPRSVFHTERY HWRLYDERFQTDIFRI
Sbjct: 241 DLFGCVNLTSRDIMNATSSLEHLEIRKPNFYIPRSVFHTERYDHWRLYDERFQTDIFRI 299

[Close]

BLAST of Carg11966 vs. TrEMBL
Match: tr|A0A1S3BUE6|A0A1S3BUE6_CUCME (F-box protein SKIP1 OS=Cucumis melo OX=3656 GN=LOC103493639 PE=4 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 1.6e-112
Identity = 264/303 (87.13%), Postives = 273/303 (90.10%), Query Frame = 0


Query: 1   MAEP-----SWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPR 60
           MAEP     SWAELT ECLTNI SRLTIEQRWRGPMLVCK W RAA D SLFSHFDLEPR
Sbjct: 1   MAEPSSESSSWAELTHECLTNILSRLTIEQRWRGPMLVCKHWFRAARDPSLFSHFDLEPR 60

Query: 61  FDSTPTESPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEV 120
           F+S PTESPAWW P+FE KIDSMLRSAV+WSLGSLS+IR+RHCSDSSL  VAQGCPNLEV
Sbjct: 61  FESAPTESPAWWLPEFETKIDSMLRSAVRWSLGSLSVIRVRHCSDSSLDFVAQGCPNLEV 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNFFNT 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN 180

Query: 181 LDPSQQKGIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPN 240
           LDPSQ KGIVPD+YL+ACPQDVDSEA AIAKFM NLEHL+L FSKLSAKALT IC+GCPN
Sbjct: 181 LDPSQHKGIVPDNYLDACPQDVDSEAAAIAKFMHNLEHLELGFSKLSAKALTSICEGCPN 240

Query: 241 LKYLDLFGCVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDI 299
           LKYLDLFGCVNLTSRDI NATSSLENLEIRKPNFYIPRSVFHTERY HWRLYDERFQTDI
Sbjct: 241 LKYLDLFGCVNLTSRDIANATSSLENLEIRKPNFYIPRSVFHTERYDHWRLYDERFQTDI 300

[Close]

BLAST of Carg11966 vs. TrEMBL
Match: tr|A0A1Q3CT10|A0A1Q3CT10_CEPFO (LRR_1 domain-containing protein/LRR_6 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_26652 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 4.1e-92
Identity = 220/297 (74.07%), Postives = 243/297 (81.82%), Query Frame = 0


Query: 3   EPSWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTPTE 62
           E  WAELTQECLTNI SRLT+E+RWRGPMLVCK WL+A+ D SL S FDL+  FDS PTE
Sbjct: 18  EAEWAELTQECLTNILSRLTLEERWRGPMLVCKSWLKASQDPSLNSVFDLDAHFDS-PTE 77

Query: 63  SPAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVXXXXXXX 122
           S  WW P FE K+DSMLRS V WS GSL+ IR RHCSD  L L AQ CPNL+V       
Sbjct: 78  SSRWWPPDFERKMDSMLRSVVVWSDGSLTHIRTRHCSDLPLNLAAQRCPNLQVLSIKSCP 137

Query: 123 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNFFNTLDPSQQK 182
            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNF N LDPSQ  
Sbjct: 138 NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNFMNWLDPSQHV 197

Query: 183 GIVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLDLF 242
           GIVPD YLNACPQD D+EA A+ KFMP+LEHL++ FSKLS + L  IC+GC NL+YLDL 
Sbjct: 198 GIVPDKYLNACPQDGDAEAAAVGKFMPHLEHLEIRFSKLSGRGLGSICEGCLNLEYLDLS 257

Query: 243 GCVNLTSRDIVNATSSLENL-EIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 299
           GC NLT RDI NATS+L+N+ +++KPNFYIPRSVFH ERYGHWRLYDERFQTD+FRI
Sbjct: 258 GCANLTGRDIANATSNLKNVKDVKKPNFYIPRSVFHAERYGHWRLYDERFQTDVFRI 313

[Close]

BLAST of Carg11966 vs. TrEMBL
Match: tr|A0A2I4F9T6|A0A2I4F9T6_9ROSI (F-box protein SKIP1 OS=Juglans regia OX=51240 GN=LOC108996828 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 5.9e-91
Identity = 216/295 (73.22%), Postives = 237/295 (80.34%), Query Frame = 0


Query: 4   PSWAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTPTES 63
           P WAELT ECL NI SRLT+E RWRG MLVCK W +A  D  L S FDLEP FDS   +S
Sbjct: 18  PDWAELTHECLANILSRLTLEHRWRGTMLVCKSWFQACKDPCLHSSFDLEPHFDSA-ADS 77

Query: 64  PAWWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVXXXXXXXX 123
            +WW+P FE K+DSML+S V WS GSLS IR RHCSD SL  VA+ CPNLEV        
Sbjct: 78  ASWWAPDFERKMDSMLQSVVVWSDGSLSEIRTRHCSDPSLLFVAERCPNLEVLSIKSCPN 137

Query: 124 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNFFNTLDPSQQKG 183
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRN  N LDPSQ  G
Sbjct: 138 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNLMNWLDPSQHVG 197

Query: 184 IVPDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLDLFG 243
           +VPD YLNACPQD DSEA AI K +P LEHL++ FSKLS + LT IC+GCPNLKYLDL G
Sbjct: 198 VVPDEYLNACPQDGDSEAAAIGKSLPYLEHLEIQFSKLSGRGLTWICEGCPNLKYLDLSG 257

Query: 244 CVNLTSRDIVNATSSLENLEIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 299
           C+NLT RDI NA+  L+++EI+KPNFYIPRSVFHTERYGHWRLYDERFQTD+FRI
Sbjct: 258 CMNLTGRDITNASLGLKDMEIKKPNFYIPRSVFHTERYGHWRLYDERFQTDVFRI 311

[Close]

BLAST of Carg11966 vs. TrEMBL
Match: tr|A0A2R6QS71|A0A2R6QS71_ACTCH (F-box protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc14569 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.3e-90
Identity = 217/294 (73.81%), Postives = 242/294 (82.31%), Query Frame = 0


Query: 6   WAELTQECLTNIFSRLTIEQRWRGPMLVCKLWLRAATDSSLFSHFDLEPRFDSTPTESPA 65
           WAELT+ECLTNI SRL++E RW GPMLVC+ WL+ + D SL S FDLE RFDS P E   
Sbjct: 18  WAELTRECLTNILSRLSLEDRWTGPMLVCRSWLQTSKDPSLNSVFDLETRFDSAPAELNR 77

Query: 66  WWSPQFEAKIDSMLRSAVQWSLGSLSLIRIRHCSDSSLQLVAQGCPNLEVXXXXXXXXXX 125
           WW+P+FE +ID+MLRS V WS GSL+ IR+RHCSD SL   A+ CPNL+V        XX
Sbjct: 78  WWTPEFERRIDAMLRSVVDWSDGSLTEIRVRHCSDVSLSFAAERCPNLQVLSIKSCPNXX 137

Query: 126 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNFFNTLDPSQQKGIV 185
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRN  N LDPSQ  GIV
Sbjct: 138 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRNLMNWLDPSQHTGIV 197

Query: 186 PDSYLNACPQDVDSEAVAIAKFMPNLEHLQLCFSKLSAKALTLICKGCPNLKYLDLFGCV 245
           P  +LNACPQD DSEA AI K MP+L HL+L FSKLSAK L LI +GC NL+YLDLFGCV
Sbjct: 198 PQEFLNACPQDGDSEAAAIGKLMPHLLHLELRFSKLSAKGLALISEGCLNLEYLDLFGCV 257

Query: 246 NLTSRDIVNATSSLENL-EIRKPNFYIPRSVFHTERYGHWRLYDERFQTDIFRI 299
           N+TSRDI NA+SSL+NL +I+KPNFYIPRSVFHTERYGHWRLYDERFQTD+FRI
Sbjct: 258 NVTSRDIANASSSLKNLKDIKKPNFYIPRSVFHTERYGHWRLYDERFQTDVFRI 311

The following BLAST results are available for this feature:

BLAST of Carg11966 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946543.1	1.3e-134	99.66	F-box protein SKIP1-like [Cucurbita moschata]	[more]
XP_023545430.1	7.2e-133	98.66	F-box protein SKIP1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022999743.1	1.6e-132	98.32	F-box protein SKIP1-like [Cucurbita maxima]	[more]
XP_022158176.1	1.6e-116	85.86	F-box protein SKIP1-like [Momordica charantia]	[more]
XP_004144728.1	3.3e-114	89.30	PREDICTED: F-box protein SKIP1-like [Cucumis sativus] >KGN61056.1 hypothetical p...	[more]

BLAST of Carg11966 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G57900.1	6.4e-67	47.64	SKP1 interacting partner 1	[more]
AT4G30640.1	2.0e-52	57.95	RNI-like superfamily protein	[more]
AT5G52480.1	1.6e-09	53.85	RNI-like superfamily protein	[more]
AT4G05475.1	5.1e-08	22.93	RNI-like superfamily protein	[more]
AT4G05460.1	3.3e-07	49.15	RNI-like superfamily protein	[more]

BLAST of Carg11966 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FDX1\|SKIP1_ARATH	1.1e-65	47.64	F-box protein SKIP1 OS=Arabidopsis thaliana OX=3702 GN=SKIP1 PE=1 SV=1	[more]
sp\|Q9M096\|FBL19_ARATH	3.6e-51	57.95	Putative F-box/LRR-repeat protein 19 OS=Arabidopsis thaliana OX=3702 GN=FBL19 PE...	[more]
sp\|Q9S9V9\|FBL23_ARATH	3.2e-07	24.40	Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana OX=3702 GN=FBL23 PE...	[more]
sp\|Q9M0U7\|FB221_ARATH	9.3e-07	22.93	Putative F-box protein At4g05475 OS=Arabidopsis thaliana OX=3702 GN=At4g05475 PE...	[more]
sp\|Q9M0U9\|SKI19_ARATH	6.0e-06	49.15	F-box protein SKIP19 OS=Arabidopsis thaliana OX=3702 GN=SKIP19 PE=1 SV=1	[more]

BLAST of Carg11966 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LM72\|A0A0A0LM72_CUCSA	2.2e-114	89.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G036050 PE=4 SV=1	[more]
tr\|A0A1S3BUE6\|A0A1S3BUE6_CUCME	1.6e-112	87.13	F-box protein SKIP1 OS=Cucumis melo OX=3656 GN=LOC103493639 PE=4 SV=1	[more]
tr\|A0A1Q3CT10\|A0A1Q3CT10_CEPFO	4.1e-92	74.07	LRR_1 domain-containing protein/LRR_6 domain-containing protein OS=Cephalotus fo...	[more]
tr\|A0A2I4F9T6\|A0A2I4F9T6_9ROSI	5.9e-91	73.22	F-box protein SKIP1 OS=Juglans regia OX=51240 GN=LOC108996828 PE=4 SV=1	[more]
tr\|A0A2R6QS71\|A0A2R6QS71_ACTCH	1.3e-90	73.81	F-box protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc14569...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036047	F-box-like_dom_sf
IPR001611	Leu-rich_rpt
IPR032675	LRR_dom_sf
IPR006553	Leu-rich_rpt_Cys-con_subtyp

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11966-RA	Carg11966-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006553	Leucine-rich repeat, cysteine-containing subtype	SMART	SM00367	LRR_CC_2	coord: 208..232 e-value: 130.0 score: 5.9 coord: 233..258 e-value: 0.017 score: 24.3 coord: 136..161 e-value: 0.014 score: 24.6 coord: 110..135 e-value: 2.1E-4 score: 30.6 coord: 87..109 e-value: 140.0 score: 5.5
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	G3DSA:3.80.10.10		coord: 53..269 e-value: 1.3E-33 score: 118.1
IPR001611	Leucine-rich repeat	PFAM	PF13516	LRR_6	coord: 136..158 e-value: 0.26 score: 11.4
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 1..51 e-value: 3.7E-9 score: 38.4
None	No IPR available	PANTHER	PTHR44078:SF5	F-BOX PROTEIN SKIP19-RELATED	coord: 3..248
None	No IPR available	PANTHER	PTHR44078	FAMILY NOT NAMED	coord: 3..248
None	No IPR available	SUPERFAMILY	SSF52047	RNI-like	coord: 82..261
IPR036047	F-box-like domain superfamily	SUPERFAMILY	SSF81383	F-box domain	coord: 3..64

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11966	Cla020020	Watermelon (97103) v1	carwmB0563
Carg11966	Csa2G036050	Cucumber (Chinese Long) v2	carcuB0591
Carg11966	MELO3C004126	Melon (DHL92) v3.5.1	carmeB0569
Carg11966	ClCG02G014400	Watermelon (Charleston Gray)	carwcgB0551
Carg11966	CSPI02G05250	Wild cucumber (PI 183967)	carcpiB0596
Carg11966	Cucsa.090110	Cucumber (Gy14) v1	carcgyB0639
Carg11966	CmaCh05G010300	Cucurbita maxima (Rimu)	carcmaB0790
Carg11966	CmaCh12G008520	Cucurbita maxima (Rimu)	carcmaB0785
Carg11966	CmoCh05G010420	Cucurbita moschata (Rifu)	carcmoB0769
Carg11966	CmoCh12G008560	Cucurbita moschata (Rifu)	carcmoB0765
Carg11966	Lsi11G006910	Bottle gourd (USVL1VR-Ls)	carlsiB510
Carg11966	Cp4.1LG11g08370	Cucurbita pepo (Zucchini)	carcpeB0800
Carg11966	Cp4.1LG07g07080	Cucurbita pepo (Zucchini)	carcpeB0806
Carg11966	CsGy2G005390	Cucumber (Gy14) v2	carcgybB0566
Carg11966	MELO3C004126.2	Melon (DHL92) v3.6.1	carmedB0576
Carg11966	CsaV3_2G007600	Cucumber (Chinese Long) v3	carcucB0598
Carg11966	Cla97C02G040160	Watermelon (97103) v2	carwmbB0588
Carg11966	Bhi06G001222	Wax gourd	carwgoB0671

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg11966	Carg16430	Silver-seed gourd	carcarB523

The following block(s) are covering this gene:

None