Carg10766 (gene) Silver-seed gourd

Overview
NameCarg10766
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionATP dependent RNA helicase
LocationCucurbita_argyrosperma_scaffold_034 : 83186 .. 84026 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGGAATCGCTGACGAAAATAAGCTGCCGTGAGAAACATTAGGGTGAAAGTTCGCCACACTCGGAACTTAGAAGCAGCCGCCCCGTAGTGCAGTCTGAGCTCCTGCGATCAATAGCAGCATCAAAGTTATGAACGAAGGGATGAAAACAACGACGAAGAAAATGGTTAAAGAGGATGAGATTTTTGCTTCTTGTACTTTCGCCACCCTCGGTCTGCACGCTACTTTATGCGACGAACTCCGAGGTGTGTTGTGTGCCGACTTTGTTCTCTTCCTTCATCGCCTCCTTTTATAATCTGCTTTCTGTTATGCTAATCATTCTACAATCTACTGTAATAGTTTTTGAGGGTTTAGCGTATTCGGTTAATTGTATTGATTCTAATCTTGGCCTGCATCTTCCGGTGTTGTTTTTTCTTCGATTGTAACAGATAAAATGGGTTTTGAAGTTCCTACGCTTGTACAGGCTCAAGCAATTCCGGCTATTTTATCTGGGCGTCATGTGTATCCTTCGAACATAACTTCTTTTAGTTGATATATAGTTGATTGCAGTTGCGCGTGTTTATATTTTGATAATAAACTGATTATATTGAAGAAAAATGCATACGAATACAAAAAGGGGATATCTGGACATTGATTATCTTTATCACGTGGAAATTCATTGAATGGCACATCTATCTTTTGATATTTGCAGTGCTTCTGTAAGTTTTCTTAACTTCTTCCTGTAGTCTTGTTAATGCGGCCACGGGCACTGGCAAAACTGTTGCGTATTTGGTTCCCATCATCCATCACTTGCAGAAGTCCGATCGTAGGATTCAGCGGGCCGATGGAACTTTCTGTGCGTAA

mRNA sequence

ACGGAATCGCTGACGAAAATAAGCTGCCGTGAGAAACATTAGGGTGAAAGTTCGCCACACTCGGAACTTAGAAGCAGCCGCCCCGTAGTGCAGTCTGAGCTCCTGCGATCAATAGCAGCATCAAAGTTATGAACGAAGGGATGAAAACAACGACGAAGAAAATGGTTAAAGAGGATGAGATTTTTGCTTCTTGTACTTTCGCCACCCTCGGTCTGCACGCTACTTTATGCGACGAACTCCGAGATAAAATGGGTTTTGAAGTTCCTACGCTTGTACAGGCTCAAGCAATTCCGGCTATTTTATCTGGGCGTCATGTTCTTGTTAATGCGGCCACGGGCACTGGCAAAACTGTTGCGTATTTGGTTCCCATCATCCATCACTTGCAGAAGTCCGATCGTAGGATTCAGCGGGCCGATGGAACTTTCTGTGCGTAA

Coding sequence (CDS)

ATGAACGAAGGGATGAAAACAACGACGAAGAAAATGGTTAAAGAGGATGAGATTTTTGCTTCTTGTACTTTCGCCACCCTCGGTCTGCACGCTACTTTATGCGACGAACTCCGAGATAAAATGGGTTTTGAAGTTCCTACGCTTGTACAGGCTCAAGCAATTCCGGCTATTTTATCTGGGCGTCATGTTCTTGTTAATGCGGCCACGGGCACTGGCAAAACTGTTGCGTATTTGGTTCCCATCATCCATCACTTGCAGAAGTCCGATCGTAGGATTCAGCGGGCCGATGGAACTTTCTGTGCGTAA

Protein sequence

MNEGMKTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTFCA
Homology
[Close]
BLAST of Carg10766 vs. NCBI nr
Match: XP_022946513.1 (DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucurbita moschata] >XP_023546293.1 DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 199.9 bits (507), Expect = 4.1e-48
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MNEGMKTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSG 60
           MNEGMKTTTKKMVKEDEIFASCTFA+LGLHATLCDELRDKMGFEVPTLVQAQAIPAILSG
Sbjct: 1   MNEGMKTTTKKMVKEDEIFASCTFASLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSG 60

Query: 61  RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 100
           RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
Sbjct: 61  RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 99

[Close]
BLAST of Carg10766 vs. NCBI nr
Match: XP_022946514.1 (DEAD-box ATP-dependent RNA helicase 17 isoform X2 [Cucurbita moschata] >XP_023546294.1 DEAD-box ATP-dependent RNA helicase 17 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 199.9 bits (507), Expect = 4.1e-48
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MNEGMKTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSG 60
           MNEGMKTTTKKMVKEDEIFASCTFA+LGLHATLCDELRDKMGFEVPTLVQAQAIPAILSG
Sbjct: 1   MNEGMKTTTKKMVKEDEIFASCTFASLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSG 60

Query: 61  RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 100
           RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
Sbjct: 61  RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 99

[Close]
BLAST of Carg10766 vs. NCBI nr
Match: XP_022975310.1 (DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucurbita maxima])

HSP 1 Score: 194.9 bits (494), Expect = 1.3e-46
Identity = 96/99 (96.97%), Postives = 97/99 (97.98%), Query Frame = 0 

Query: 1   MNEGMKTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSG 60
           MNE MKTTTKKMVKEDEIFASCTFA+LGLH TLCDELRDKMGFEVPTLVQAQAIPAILSG
Sbjct: 1   MNEVMKTTTKKMVKEDEIFASCTFASLGLHTTLCDELRDKMGFEVPTLVQAQAIPAILSG 60

Query: 61  RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 100
           RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
Sbjct: 61  RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 99

[Close]
BLAST of Carg10766 vs. NCBI nr
Match: XP_022975312.1 (DEAD-box ATP-dependent RNA helicase 17 isoform X2 [Cucurbita maxima])

HSP 1 Score: 194.9 bits (494), Expect = 1.3e-46
Identity = 96/99 (96.97%), Postives = 97/99 (97.98%), Query Frame = 0 

Query: 1   MNEGMKTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSG 60
           MNE MKTTTKKMVKEDEIFASCTFA+LGLH TLCDELRDKMGFEVPTLVQAQAIPAILSG
Sbjct: 1   MNEVMKTTTKKMVKEDEIFASCTFASLGLHTTLCDELRDKMGFEVPTLVQAQAIPAILSG 60

Query: 61  RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 100
           RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF
Sbjct: 61  RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 99

[Close]
BLAST of Carg10766 vs. NCBI nr
Match: XP_004141076.1 (PREDICTED: DEAD-box ATP-dependent RNA helicase 17 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 5.8e-42
Identity = 88/98 (89.80%), Postives = 93/98 (94.90%), Query Frame = 0 

Query: 2   NEGMKTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGR 61
           NEG+KTTTKKMVKE E+FASCTFA+LGL +TLCD+LRDKMGFEVPTLVQAQAIPAILS R
Sbjct: 9   NEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRR 68

Query: 62  HVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 100
           HVLVNAATGTGKTVAYLVPIIHHLQKS RR QRADGTF
Sbjct: 69  HVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTF 106

[Close]
BLAST of Carg10766 vs. TAIR10
Match: AT2G40700.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 119.4 bits (298), Expect = 1.3e-27
Identity = 54/82 (65.85%), Postives = 67/82 (81.71%), Query Frame = 0 

Query: 18  IFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAY 77
           +FASC+F++LGL   L D+L+++MGFE PTLVQAQAIP ILSGR VLVNA TGTGKT+AY
Sbjct: 25  LFASCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAY 84

Query: 78  LVPIIHHLQKSDRRIQRADGTF 100
           L P+IHHLQ    ++ R+ GTF
Sbjct: 85  LAPLIHHLQGHSPKVDRSHGTF 106

[Close]
BLAST of Carg10766 vs. TAIR10
Match: AT1G12770.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-11
Identity = 35/86 (40.70%), Postives = 55/86 (63.95%), Query Frame = 0 

Query: 2   NEGMKTTTKKMVKE--DEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILS 61
           N+ MK   +K   E    +F++ +F  LGL  +L D L ++ GF VPT VQ+ A+PAI+ 
Sbjct: 88  NDKMKVVKEKKPAEIVSPLFSAKSFEELGLPDSLLDSL-EREGFSVPTDVQSAAVPAIIK 147

Query: 62  GRHVLVNAATGTGKTVAYLVPIIHHL 86
           G   ++ + TG+GKT+AYL+PI+  +
Sbjct: 148 GHDAVIQSYTGSGKTLAYLLPILSEI 172

[Close]
BLAST of Carg10766 vs. TAIR10
Match: AT4G34910.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 61.2 bits (147), Expect = 4.1e-10
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = 0 

Query: 23  TFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPII 82
           +F  LGL + L   L  K G E PTL+Q  AIP IL G+ V+  A TG+GKT+AYL+P++
Sbjct: 47  SFEELGLDSRLIRAL-TKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLL 106

Query: 83  HHLQKSD 90
             L  +D
Sbjct: 107 QKLFSAD 112

[Close]
BLAST of Carg10766 vs. TAIR10
Match: AT1G59990.1 (DEA(D/H)-box RNA helicase family protein)

HSP 1 Score: 60.1 bits (144), Expect = 9.2e-10
Identity = 39/87 (44.83%), Postives = 52/87 (59.77%), Query Frame = 0 

Query: 4   GMKTTTKKMVKE---DEIFASCT--FATLGLHATLCDELRDKMGFEVPTLVQAQAIPAIL 63
           G  + T+  V++   D  FA  T  + +LGL   +   LRD  GF+ P+L QA  IP+IL
Sbjct: 57  GFASATEAEVEKKGNDTFFADHTVSWKSLGLSDNVSIALRDS-GFDRPSLTQAVCIPSIL 116

Query: 64  SGRHVLVNAATGTGKTVAYLVPIIHHL 86
           SG+ V+V A TG+GKT  YL PII  L
Sbjct: 117 SGKDVIVAAETGSGKTHGYLAPIIDQL 142

[Close]
BLAST of Carg10766 vs. TAIR10
Match: AT2G47330.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-09
Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 0 

Query: 23  TFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAYLVPII 82
           TF   G  + +   ++ K  +E PT +Q QA+P +LSGR V+  A TG+GKT A+++P+I
Sbjct: 229 TFEDCGFSSQIMSAIK-KQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMI 288

Query: 83  HHL--QKSDRRIQRADGTFCA 102
            H+  Q   +R +   G  CA
Sbjct: 289 VHIMDQPELQRDEGPIGVICA 308

[Close]
BLAST of Carg10766 vs. Swiss-Prot
Match: sp|Q0DLB9|RH17_ORYSJ (DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa subsp. japonica OX=39947 GN=RH17 PE=2 SV=2)

HSP 1 Score: 121.7 bits (304), Expect = 4.7e-27
Identity = 55/94 (58.51%), Postives = 71/94 (75.53%), Query Frame = 0 

Query: 6   KTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLV 65
           K+   K   ++ +FASC+F  LGLH TLC  L+DKMGF+ PT +QAQAIP  +SG+H+LV
Sbjct: 7   KSPVAKEEDKEGLFASCSFTDLGLHPTLCAHLQDKMGFQAPTRIQAQAIPVAMSGQHMLV 66

Query: 66  NAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 100
            AATGTGKT+AYL PI+H LQ  + R++R DGTF
Sbjct: 67  KAATGTGKTLAYLAPIVHLLQMREPRVERTDGTF 100

[Close]
BLAST of Carg10766 vs. Swiss-Prot
Match: sp|Q7XJN0|RH17_ARATH (DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana OX=3702 GN=RH17 PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.3e-26
Identity = 54/82 (65.85%), Postives = 67/82 (81.71%), Query Frame = 0 

Query: 18  IFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTVAY 77
           +FASC+F++LGL   L D+L+++MGFE PTLVQAQAIP ILSGR VLVNA TGTGKT+AY
Sbjct: 25  LFASCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAY 84

Query: 78  LVPIIHHLQKSDRRIQRADGTF 100
           L P+IHHLQ    ++ R+ GTF
Sbjct: 85  LAPLIHHLQGHSPKVDRSHGTF 106

[Close]
BLAST of Carg10766 vs. Swiss-Prot
Match: sp|Q9H8H2|DDX31_HUMAN (Probable ATP-dependent RNA helicase DDX31 OS=Homo sapiens OX=9606 GN=DDX31 PE=1 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 1.0e-13
Identity = 34/85 (40.00%), Postives = 52/85 (61.18%), Query Frame = 0 

Query: 15  EDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKT 74
           ++++F S  F  LGLH  L   +   +     T VQ Q+IP +L GR  LV + TG+GKT
Sbjct: 223 QEKVFTSAAFHELGLHPHLISTINTVLKMSSMTSVQKQSIPVLLEGRDALVRSQTGSGKT 282

Query: 75  VAYLVPIIHHLQKSDRRIQRADGTF 100
           +AY +P++  LQ  + +IQR+DG +
Sbjct: 283 LAYCIPVVQSLQAMESKIQRSDGPY 307

[Close]
BLAST of Carg10766 vs. Swiss-Prot
Match: sp|Q86B47|Y8611_DROME (Probable ATP-dependent RNA helicase CG8611 OS=Drosophila melanogaster OX=7227 GN=CG8611 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.2e-13
Identity = 40/97 (41.24%), Postives = 56/97 (57.73%), Query Frame = 0 

Query: 3   EGMKTTTKKMVK--EDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSG 62
           E +K   ++ VK  ++ IF     +TLGLH      L D +     T VQ + IP +L G
Sbjct: 306 EALKQLGQRAVKPVKETIFTGSKISTLGLHPHAVKNLEDLLSIRELTSVQQKTIPEVLQG 365

Query: 63  RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADG 98
           + VLV + TG+GKT+AY +P++  LQK   RIQR DG
Sbjct: 366 KDVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKDG 402

[Close]
BLAST of Carg10766 vs. Swiss-Prot
Match: sp|A6SNX1|DBP9_BOTFB (ATP-dependent RNA helicase dbp9 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 GN=dbp9 PE=3 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 5.5e-12
Identity = 37/72 (51.39%), Postives = 48/72 (66.67%), Query Frame = 0 

Query: 16 DEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLVNAATGTGKTV 75
          D I  + TFA+LGL A L   +  K  F+ PTLVQ++AIP  L GR +L  A TG+GKT 
Sbjct: 18 DAIKENVTFASLGLDARLLQGIA-KQNFQSPTLVQSKAIPLTLEGRDILARAKTGSGKTA 77

Query: 76 AYLVPIIHHLQK 88
          AYL+PI+H + K
Sbjct: 78 AYLLPILHSILK 88

[Close]
BLAST of Carg10766 vs. TrEMBL
Match: tr|A0A0A0LKK2|A0A0A0LKK2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000050 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 3.8e-42
Identity = 88/98 (89.80%), Postives = 93/98 (94.90%), Query Frame = 0 

Query: 2   NEGMKTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGR 61
           NEG+KTTTKKMVKE E+FASCTFA+LGL +TLCD+LRDKMGFEVPTLVQAQAIPAILS R
Sbjct: 9   NEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRR 68

Query: 62  HVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 100
           HVLVNAATGTGKTVAYLVPIIHHLQKS RR QRADGTF
Sbjct: 69  HVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTF 106

[Close]
BLAST of Carg10766 vs. TrEMBL
Match: tr|A0A1S3CB30|A0A1S3CB30_CUCME (RNA helicase OS=Cucumis melo OX=3656 GN=LOC103498955 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.1e-41
Identity = 88/99 (88.89%), Postives = 92/99 (92.93%), Query Frame = 0 

Query: 1   MNEGMKTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSG 60
           +NEG+KTT KKMVKE EIFASCTFA+LGL  TLCD+LRDKMGFEVPTLVQAQAIPAILS 
Sbjct: 8   INEGVKTTAKKMVKEGEIFASCTFASLGLDPTLCDQLRDKMGFEVPTLVQAQAIPAILSR 67

Query: 61  RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 100
           RHVLVNAATGTGKTVAYLVPIIHHLQKS RR QRADGTF
Sbjct: 68  RHVLVNAATGTGKTVAYLVPIIHHLQKSTRRTQRADGTF 106

[Close]
BLAST of Carg10766 vs. TrEMBL
Match: tr|A0A1S3CCT2|A0A1S3CCT2_CUCME (RNA helicase OS=Cucumis melo OX=3656 GN=LOC103498955 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.1e-41
Identity = 88/99 (88.89%), Postives = 92/99 (92.93%), Query Frame = 0 

Query: 1   MNEGMKTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSG 60
           +NEG+KTT KKMVKE EIFASCTFA+LGL  TLCD+LRDKMGFEVPTLVQAQAIPAILS 
Sbjct: 8   INEGVKTTAKKMVKEGEIFASCTFASLGLDPTLCDQLRDKMGFEVPTLVQAQAIPAILSR 67

Query: 61  RHVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 100
           RHVLVNAATGTGKTVAYLVPIIHHLQKS RR QRADGTF
Sbjct: 68  RHVLVNAATGTGKTVAYLVPIIHHLQKSTRRTQRADGTF 106

[Close]
BLAST of Carg10766 vs. TrEMBL
Match: tr|A0A2R6QUL8|A0A2R6QUL8_ACTCH (RNA helicase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc12932 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.7e-34
Identity = 70/97 (72.16%), Postives = 84/97 (86.60%), Query Frame = 0 

Query: 3   EGMKTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRH 62
           E MK T K    + ++FASC+F++LGLH TLCD+LR++MGF+VPTL+QAQAIP ILSG+H
Sbjct: 10  EAMKETKKTKTADTQVFASCSFSSLGLHTTLCDQLRERMGFKVPTLIQAQAIPVILSGKH 69

Query: 63  VLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 100
           VLVNAATGTGKTVAYL P+IHHLQK D RIQR+DGTF
Sbjct: 70  VLVNAATGTGKTVAYLAPVIHHLQKYDPRIQRSDGTF 106

[Close]
BLAST of Carg10766 vs. TrEMBL
Match: tr|A0A2I4GXK9|A0A2I4GXK9_9ROSI (DEAD-box ATP-dependent RNA helicase 17-like OS=Juglans regia OX=51240 GN=LOC109011763 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 8.5e-34
Identity = 73/94 (77.66%), Postives = 83/94 (88.30%), Query Frame = 0 

Query: 6   KTTTKKMVKEDEIFASCTFATLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGRHVLV 65
           KT +K+  KE EIFASC+F++LGLHATLCDELR++M FE PTLVQAQAIP ILSGRHVLV
Sbjct: 14  KTKSKEEHKESEIFASCSFSSLGLHATLCDELRERMDFEAPTLVQAQAIPVILSGRHVLV 73

Query: 66  NAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTF 100
           NAATGTGKTVAYL PIIH LQ+ + RIQR+DGTF
Sbjct: 74  NAATGTGKTVAYLAPIIHQLQEHEPRIQRSDGTF 107

The following BLAST results are available for this feature:
BLAST of Carg10766 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022946513.14.1e-4898.99DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucurbita moschata] >XP_02354... [more]
XP_022946514.14.1e-4898.99DEAD-box ATP-dependent RNA helicase 17 isoform X2 [Cucurbita moschata] >XP_02354... [more]
XP_022975310.11.3e-4696.97DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucurbita maxima][more]
XP_022975312.11.3e-4696.97DEAD-box ATP-dependent RNA helicase 17 isoform X2 [Cucurbita maxima][more]
XP_004141076.15.8e-4289.80PREDICTED: DEAD-box ATP-dependent RNA helicase 17 [Cucumis sativus][more]
BLAST of Carg10766 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G40700.11.3e-2765.85P-loop containing nucleoside triphosphate hydrolases superfamily protein[more]
AT1G12770.11.7e-1140.70P-loop containing nucleoside triphosphate hydrolases superfamily protein[more]
AT4G34910.14.1e-1047.76P-loop containing nucleoside triphosphate hydrolases superfamily protein[more]
AT1G59990.19.2e-1044.83DEA(D/H)-box RNA helicase family protein[more]
AT2G47330.11.2e-0938.27P-loop containing nucleoside triphosphate hydrolases superfamily protein[more]
BLAST of Carg10766 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q0DLB9|RH17_ORYSJ4.7e-2758.51DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa subsp. japonica OX=39947 ... [more]
sp|Q7XJN0|RH17_ARATH2.3e-2665.85DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana OX=3702 GN=RH17 P... [more]
sp|Q9H8H2|DDX31_HUMAN1.0e-1340.00Probable ATP-dependent RNA helicase DDX31 OS=Homo sapiens OX=9606 GN=DDX31 PE=1 ... [more]
sp|Q86B47|Y8611_DROME2.2e-1341.24Probable ATP-dependent RNA helicase CG8611 OS=Drosophila melanogaster OX=7227 GN... [more]
sp|A6SNX1|DBP9_BOTFB5.5e-1251.39ATP-dependent RNA helicase dbp9 OS=Botryotinia fuckeliana (strain B05.10) OX=332... [more]
BLAST of Carg10766 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LKK2|A0A0A0LKK2_CUCSA3.8e-4289.80Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000050 PE=4 SV=1[more]
tr|A0A1S3CB30|A0A1S3CB30_CUCME1.1e-4188.89RNA helicase OS=Cucumis melo OX=3656 GN=LOC103498955 PE=3 SV=1[more]
tr|A0A1S3CCT2|A0A1S3CCT2_CUCME1.1e-4188.89RNA helicase OS=Cucumis melo OX=3656 GN=LOC103498955 PE=3 SV=1[more]
tr|A0A2R6QUL8|A0A2R6QUL8_ACTCH1.7e-3472.16RNA helicase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc12932 ... [more]
tr|A0A2I4GXK9|A0A2I4GXK9_9ROSI8.5e-3477.66DEAD-box ATP-dependent RNA helicase 17-like OS=Juglans regia OX=51240 GN=LOC1090... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR014014RNA_helicase_DEAD_Q_motif
IPR011545DEAD/DEAH_box_helicase_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg10766-RACarg10766-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 48..88
e-value: 4.5E-12
score: 46.0
NoneNo IPR availableGENE3DG3DSA:3.40.50.300coord: 1..100
e-value: 2.7E-25
score: 90.9
NoneNo IPR availablePANTHERPTHR24031:SF210DEAD-BOX ATP-DEPENDENT RNA HELICASE 22coord: 15..91
NoneNo IPR availablePANTHERPTHR24031RNA HELICASEcoord: 15..91
IPR014014RNA helicase, DEAD-box type, Q motifPROSITEPS51195Q_MOTIFcoord: 22..51
score: 9.146
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILYSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 12..89