Lsi11G001440 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi11G001440
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionDEAD-box ATP-dependent RNA helicase-like protein
Locationchr11 : 1597703 .. 1598766 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAAAATTTAAAATGAGACATTTTTATCAATTTTCCCTCTGGCCAAAAACTCCAAAATATCCTCCTTTGTTCCACGTCGCGAGCCCATCTTCCCTACACTAACTCCTCCTCCTCCGGCATTCACGTCTGCAGCCGCGCCGCCGCCTCTGTCATCGTCGCCGCTCTCACGTCGTTGCCATCGGTAAGCTCCGTGGGTTTCTTCTTTTCTTTCTCTCTCCTTCGGTCCTTCTCCCTCTCCCTCACTTCTCACATCCGTTTTCCTCTCTTCACCACAACGACCAGGCAACTTAGAACTTAGGAGCAGGTAACCGTACAACCGGGTAAGCTGAGCTCCTGGGATAAGTAGTAGCATCAAATATATGAACGAAGGGATGAAAACAACAACGAAGAAAATGGTTAAAGAGGGTGAGATTTTTGCTTCTTGTACTTTCGCCAGCCTCGGTCTGGACTCTACTTTATGCGACCAACTCCGAGGTGTGTTCTGTGCCGACTTTATTTTCTTCCTTTACCACGTCTATTTATAATCTACCTTCTGCTATGTTAATCATTCTAGAATTTTACTTTAAGAGTTGTTGAGGATTTAGAATATCCGGTTAATTGCATTGATTCTAATCTGGACAGATAAAATGGGATTTGAACTTCCTACGCTTGTACAGGCTCAAGCAATTCCGGCTATTTTATCCAGGCGTCATGTGTATCCTTTGAGGCTTGTCCTTTTTTTTTTTTTAATAGAAACAATTGTTTTTTTCTCAATGAAATTGTTGCTTTATCAATAAAATTGATGATAAAAAACTGATATTATATTGTAGAAAAACGCACACAAAAAGGGGATATCTGGACATTGATTCTCTATCTTTATCACTTGGAAATACATTGAATGGTGCATCTATGTTTTGATACTTGTAGTGCTTCTATAGGTTTTCTTAACTCTGTCATGTAGTCTTGTTAATGCGGCCACAGGCACTGGCAAAACTATTGCATATTTGGCTCCAATCATCCATCACTTGCAGAAATCCGATCGTAGGATTCAACGGGCTGATGGAACTTTTGGTGCGTTACATTAG

mRNA sequence

TGAAAATTTAAAATGAGACATTTTTATCAATTTTCCCTCTGGCCAAAAACTCCAAAATATCCTCCTTTGTTCCACGTCGCGAGCCCATCTTCCCTACACTAACTCCTCCTCCTCCGGCATTCACGTCTGCAGCCGCGCCGCCGCCTCTGTCATCGTCGCCGCTCTCACGTCGTTGCCATCGCCTCGGTCTGGACTCTACTTTATGCGACCAACTCCGAGTCTTGTTAATGCGGCCACAGGCACTGGCAAAACTATTGCATATTTGGCTCCAATCATCCATCACTTGCAGAAATCCGATCGTAGGATTCAACGGGCTGATGGAACTTTTGGTGCGTTACATTAG

Coding sequence (CDS)

ATGCGACCAACTCCGAGTCTTGTTAATGCGGCCACAGGCACTGGCAAAACTATTGCATATTTGGCTCCAATCATCCATCACTTGCAGAAATCCGATCGTAGGATTCAACGGGCTGATGGAACTTTTGGTGCGTTACATTAG

Protein sequence

MRPTPSLVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTFGALH
Homology
[Close]
BLAST of Lsi11G001440 vs. Swiss-Prot
Match: RH17_ORYSJ (DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa subsp. japonica GN=Os05g0110500 PE=2 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 6.3e-08
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 1 

Query: 7   LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTF 43
           LV AATGTGKT+AYLAPI+H LQ  + R++R DGTF
Sbjct: 65  LVKAATGTGKTLAYLAPIVHLLQMREPRVERTDGTF 100

[Close]
BLAST of Lsi11G001440 vs. Swiss-Prot
Match: RH17_ARATH (DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana GN=RH17 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 8.2e-08
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 1 

Query: 7   LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTF 43
           LVNA TGTGKTIAYLAP+IHHLQ    ++ R+ GTF
Sbjct: 71  LVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTF 106

[Close]
BLAST of Lsi11G001440 vs. TrEMBL
Match: A0A0A0LKK2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000050 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.1e-10
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 1 

Query: 7   LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTFG 44
           LVNAATGTGKT+AYL PIIHHLQKS RR QRADGTFG
Sbjct: 71  LVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFG 107

[Close]
BLAST of Lsi11G001440 vs. TrEMBL
Match: A0A072V8B8_MEDTR (DEAD-box ATP-dependent RNA helicase-like protein OS=Medicago truncatula GN=MTR_2g043360 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 8.0e-10
Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 1 

Query: 6   SLVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTF 43
           +LVNAATGTGKTIAYLAPIIHHLQ  D+RIQR+DGTF
Sbjct: 81  ALVNAATGTGKTIAYLAPIIHHLQSYDKRIQRSDGTF 117

[Close]
BLAST of Lsi11G001440 vs. TrEMBL
Match: G7JPD2_MEDTR (DEAD-box ATP-dependent RNA helicase-like protein OS=Medicago truncatula GN=MTR_4g059460 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.0e-09
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 1 

Query: 6   SLVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTF 43
           +LVNAATGTGKTIAYLAPIIHHLQ  D+R+QR+DGTF
Sbjct: 84  ALVNAATGTGKTIAYLAPIIHHLQSYDKRVQRSDGTF 120

[Close]
BLAST of Lsi11G001440 vs. TrEMBL
Match: A0A072UW14_MEDTR (DEAD-box ATP-dependent RNA helicase OS=Medicago truncatula GN=MTR_4g459350 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.0e-09
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 1 

Query: 6   SLVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTF 43
           +LVNAATGTGKTIAYLAPIIHHLQ  D+R+QR+DGTF
Sbjct: 81  ALVNAATGTGKTIAYLAPIIHHLQSYDKRVQRSDGTF 117

[Close]
BLAST of Lsi11G001440 vs. TrEMBL
Match: A0A0R0I8R5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G072400 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.4e-09
Identity = 31/38 (81.58%), Postives = 35/38 (92.11%), Query Frame = 1 

Query: 6   SLVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTFG 44
           +LVNAATGTGKT+AYLAPIIHHLQ  + RIQR+DGTFG
Sbjct: 66  ALVNAATGTGKTVAYLAPIIHHLQGYENRIQRSDGTFG 103

[Close]
BLAST of Lsi11G001440 vs. TAIR10
Match: AT2G40700.1 (AT2G40700.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 56.6 bits (135), Expect = 4.6e-09
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 1 

Query: 7   LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTF 43
           LVNA TGTGKTIAYLAP+IHHLQ    ++ R+ GTF
Sbjct: 71  LVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTF 106

[Close]
BLAST of Lsi11G001440 vs. NCBI nr
Match: gi|659071481|ref|XP_008460023.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 17 isoform X2 [Cucumis melo])

HSP 1 Score: 72.4 bits (176), Expect = 2.3e-10
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 1 

Query: 7   LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTFG 44
           LVNAATGTGKT+AYL PIIHHLQKS RR QRADGTFG
Sbjct: 71  LVNAATGTGKTVAYLVPIIHHLQKSTRRTQRADGTFG 107

[Close]
BLAST of Lsi11G001440 vs. NCBI nr
Match: gi|700205377|gb|KGN60496.1| (hypothetical protein Csa_2G000050 [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 3.0e-10
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 1 

Query: 7   LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTFG 44
           LVNAATGTGKT+AYL PIIHHLQKS RR QRADGTFG
Sbjct: 71  LVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFG 107

[Close]
BLAST of Lsi11G001440 vs. NCBI nr
Match: gi|922390322|ref|XP_013463583.1| (DEAD-box ATP-dependent RNA helicase-like protein [Medicago truncatula])

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-09
Identity = 32/37 (86.49%), Postives = 35/37 (94.59%), Query Frame = 1 

Query: 6   SLVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTF 43
           +LVNAATGTGKTIAYLAPIIHHLQ  D+RIQR+DGTF
Sbjct: 81  ALVNAATGTGKTIAYLAPIIHHLQSYDKRIQRSDGTF 117

[Close]
BLAST of Lsi11G001440 vs. NCBI nr
Match: gi|357472211|ref|XP_003606390.1| (DEAD-box ATP-dependent RNA helicase-like protein [Medicago truncatula])

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-09
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = 1 

Query: 6   SLVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTF 43
           +LVNAATGTGKTIAYLAPIIHHLQ  D+R+QR+DGTF
Sbjct: 84  ALVNAATGTGKTIAYLAPIIHHLQSYDKRVQRSDGTF 120

[Close]
BLAST of Lsi11G001440 vs. NCBI nr
Match: gi|659071479|ref|XP_008460014.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucumis melo])

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-09
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 1 

Query: 7   LVNAATGTGKTIAYLAPIIHHLQKSDRRIQRADGTF 43
           LVNAATGTGKT+AYL PIIHHLQKS RR QRADGTF
Sbjct: 71  LVNAATGTGKTVAYLVPIIHHLQKSTRRTQRADGTF 106

The following BLAST results are available for this feature:
BLAST of Lsi11G001440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RH17_ORYSJ6.3e-0869.44DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa subsp. japonica GN=Os05g0... [more]
RH17_ARATH8.2e-0869.44DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana GN=RH17 PE=2 SV=1[more]
BLAST of Lsi11G001440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKK2_CUCSA2.1e-1089.19Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000050 PE=4 SV=1[more]
A0A072V8B8_MEDTR8.0e-1086.49DEAD-box ATP-dependent RNA helicase-like protein OS=Medicago truncatula GN=MTR_2... [more]
G7JPD2_MEDTR1.0e-0983.78DEAD-box ATP-dependent RNA helicase-like protein OS=Medicago truncatula GN=MTR_4... [more]
A0A072UW14_MEDTR1.0e-0983.78DEAD-box ATP-dependent RNA helicase OS=Medicago truncatula GN=MTR_4g459350 PE=4 ... [more]
A0A0R0I8R5_SOYBN1.4e-0981.58Uncharacterized protein OS=Glycine max GN=GLYMA_09G072400 PE=3 SV=1[more]
BLAST of Lsi11G001440 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G40700.14.6e-0969.44 P-loop containing nucleoside triphosphate hydrolases superfamily pro... [more]
BLAST of Lsi11G001440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659071481|ref|XP_008460023.1|2.3e-1089.19PREDICTED: DEAD-box ATP-dependent RNA helicase 17 isoform X2 [Cucumis melo][more]
gi|700205377|gb|KGN60496.1|3.0e-1089.19hypothetical protein Csa_2G000050 [Cucumis sativus][more]
gi|922390322|ref|XP_013463583.1|1.2e-0986.49DEAD-box ATP-dependent RNA helicase-like protein [Medicago truncatula][more]
gi|357472211|ref|XP_003606390.1|1.5e-0983.78DEAD-box ATP-dependent RNA helicase-like protein [Medicago truncatula][more]
gi|659071479|ref|XP_008460014.1|1.5e-0988.89PREDICTED: DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009640 photomorphogenesis
biological_process GO:0010501 RNA secondary structure unwinding
biological_process GO:0042991 transcription factor import into nucleus
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0051604 protein maturation
biological_process GO:0000338 protein deneddylation
biological_process GO:0006406 mRNA export from nucleus
biological_process GO:0006312 mitotic recombination
biological_process GO:0009560 embryo sac egg cell differentiation
cellular_component GO:0005575 cellular_component
cellular_component GO:0005622 intracellular
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005730 nucleolus
molecular_function GO:0003723 RNA binding
molecular_function GO:0004386 helicase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0004004 ATP-dependent RNA helicase activity
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G001440.1Lsi11G001440.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3DG3DSA:3.40.50.300coord: 7..39
score: 5.
IPR027417P-loop containing nucleoside triphosphate hydrolaseunknownSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 7..33
score: 2.7
NoneNo IPR availablePANTHERPTHR24031RNA HELICASEcoord: 7..42
score: 1.3
NoneNo IPR availablePANTHERPTHR24031:SF248DEAD-BOX ATP-DEPENDENT RNA HELICASE 17coord: 7..42
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi11G001440CmaCh05G014320Cucurbita maxima (Rimu)cmalsiB714
Lsi11G001440Cla97C11G207700Watermelon (97103) v2lsiwmbB074
Lsi11G001440Bhi06G001364Wax gourdlsiwgoB100
Lsi11G001440Cp4.1LG11g11980Cucurbita pepo (Zucchini)cpelsiB074
Lsi11G001440CsGy2G000040Cucumber (Gy14) v2cgyblsiB089
Lsi11G001440Carg10766Silver-seed gourdcarlsiB514
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi11G001440Watermelon (Charleston Gray)lsiwcgB078
Lsi11G001440Watermelon (97103) v1lsiwmB116