CSPI02G00050 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI02G00050
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	ATP dependent RNA helicase
Location	Chr2 : 77225 .. 78713 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAGCAGCATCAAATATACCAACGAAGGGGTGAAAACGACAACGAAGAAAATGGTTAAAGAGGGTGAGGTTTTTGCTTCTTGTACTTTCGCCAGCCTCGGTCTGGACTCTACTCTATGCGACCAACTCCGAGGTGTGTTGTGTGCCGCCTTTATTCTCTTCCTTTTCCAATGTCTATTTATTACCTGCCTTCTGCTATGCTAATCGTTCTAGAGTTTTACTTCAAGAGCTGTTGAAGATTTAGGGTATTCGGTTAATTGCATTGATTCTCATATTGGTCTGCATCTTTTGGTGTCACGTTTCTTCCATCTGGACAGATAAAATGGGATTTGAAGTTCCTACGCTTGTACAGGCTCAAGCAATTCCGGCTATTTTATCCAGGCGTCATGTGTATCCTTTGAGGCTTTTGCCCCCTCAATGAAAGTTGGTGCCTCATCAATCAAATTATTTATGATAAGAAACTGATATTCTATTATAGAAAAACATATACAAAAAGGGGCTATTTGGACATGGACATTGATTCTCTATCTCGATCACATATAATTGCATTGAAGGGTCATCTATCTTTTGATATTTAGTTTTCTTAACTTCGATATGTAGTCTTGTTAATGCTGCCACAGGCACAGGCAAAACTGTCGCATATTTGGTTCCAATCATCCATCACTTACAGAAATCCGCTCGTAGGACTCAGCGGGCTGATGGAACTTTCGGTGTGTAGCATCAATGATATTTTTTTTTTCACTCTCAATTTTGCCTTTGCCTAATTATTTGTGGGATCTTTTCGAATGTAAAAAATAGACCAAAATATTAACAAATATAGCAATATATCCCTGTTTAGACACAAATAGACTATAATATTTTACCATATTTGTGAATATTTTCAACAATTTTATCATTTATAATAATTTTCCATTATTTATCTATATAATTTCTCTGCAATTATTTTTATATATACATACATATTTATATGTATAGCTATAGTATAGAAAACAAGAGACTAGTGCCTCCTCCCTAAAGGGGTCAAACAAAACCTTCTCATTCTAGTTTTTTCAGTGAGGACTTCTAATTAGCCTACAAAAATCTGGATTCCTTGTGCAACCACCGACTGAAGAGGATTTCCTGTTACCATGTACATATATCGTTAGGATAGGAGTGGGCCAAATGAACTAGAAGAACCTGACATGCAAGTTCCATACCTTTTCAATACTATGATTGATTGGGTCTTGAGAGGAAGGTAATAACGCAATATCGGTTTTCATCTTTCTCCCTAATTTACAACTACCTCAGGGGAGGCACACTGTCAGTAATCAAGTATCGTCTGGTGGCCACTGGCAATCATTCCACTCAGCTACCTCTCAAGGCAATAATCCTCCCGTTTACTTCCATTGCCACCAAGTCTGGCCGGAACAAGCTACTTGTTGTCCAACAATGCTACCAAAGCCAGAACAACCTTTACTACGAAAAGACCTATTGCCCAATTCTCTAA

mRNA sequence

ATGAGTAGCAGCATCAAATATACCAACGAAGGGGTGAAAACGACAACGAAGAAAATGGTTAAAGAGGGTGAGGTTTTTGCTTCTTGTACTTTCGCCAGCCTCGGTCTGGACTCTACTCTATGCGACCAACTCCGAGATAAAATGGGATTTGAAGTTCCTACGCTTGTACAGGCTCAAGCAATTCCGGCTATTTTATCCAGGCGTCATGTTCTTGTTAATGCTGCCACAGGCACAGGCAAAACTGTCGCATATTTGGTTCCAATCATCCATCACTTACAGAAATCCGCTCGTAGGACTCAGCGGGCTGATGGAACTTTCGGTGTGGGAGGCACACTGTCAGTAATCAAGTATCGTCTGGTGGCCACTGGCAATCATTCCACTCAGCTACCTCTCAAGGCAATAATCCTCCCGTTTACTTCCATTGCCACCAAGTCTGGCCGGAACAAGCTACTTGTTGTCCAACAATGCTACCAAAGCCAGAACAACCTTTACTACGAAAAGACCTATTGCCCAATTCTCTAA

Coding sequence (CDS)

ATGAGTAGCAGCATCAAATATACCAACGAAGGGGTGAAAACGACAACGAAGAAAATGGTTAAAGAGGGTGAGGTTTTTGCTTCTTGTACTTTCGCCAGCCTCGGTCTGGACTCTACTCTATGCGACCAACTCCGAGATAAAATGGGATTTGAAGTTCCTACGCTTGTACAGGCTCAAGCAATTCCGGCTATTTTATCCAGGCGTCATGTTCTTGTTAATGCTGCCACAGGCACAGGCAAAACTGTCGCATATTTGGTTCCAATCATCCATCACTTACAGAAATCCGCTCGTAGGACTCAGCGGGCTGATGGAACTTTCGGTGTGGGAGGCACACTGTCAGTAATCAAGTATCGTCTGGTGGCCACTGGCAATCATTCCACTCAGCTACCTCTCAAGGCAATAATCCTCCCGTTTACTTCCATTGCCACCAAGTCTGGCCGGAACAAGCTACTTGTTGTCCAACAATGCTACCAAAGCCAGAACAACCTTTACTACGAAAAGACCTATTGCCCAATTCTCTAA

Homology

[Close]

BLAST of CSPI02G00050 vs. Swiss-Prot
Match: RH17_ARATH (DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana GN=RH17 PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.3e-26
Identity = 62/105 (59.05%), Postives = 78/105 (74.29%), Query Frame = 1


Query: 4   SIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPA 63
           S + T +  K  +K   K G +FASC+F+SLGLD+ L DQL+++MGFE PTLVQAQAIP 
Sbjct: 7   SARETKQEAKDASK--AKSG-LFASCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPV 66

Query: 64  ILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV 109
           ILS R VLVNA TGTGKT+AYL P+IHHLQ  + +  R+ GTF +
Sbjct: 67  ILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFAL 108

[Close]

BLAST of CSPI02G00050 vs. Swiss-Prot
Match: RH17_ORYSJ (DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa subsp. japonica GN=Os05g0110500 PE=2 SV=2)

HSP 1 Score: 113.2 bits (282), Expect = 2.8e-24
Identity = 56/98 (57.14%), Postives = 69/98 (70.41%), Query Frame = 1


Query: 11  GVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHV 70
           G     K+  KEG +FASC+F  LGL  TLC  L+DKMGF+ PT +QAQAIP  +S +H+
Sbjct: 6   GKSPVAKEEDKEG-LFASCSFTDLGLHPTLCAHLQDKMGFQAPTRIQAQAIPVAMSGQHM 65

Query: 71  LVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV 109
           LV AATGTGKT+AYL PI+H LQ    R +R DGTF +
Sbjct: 66  LVKAATGTGKTLAYLAPIVHLLQMREPRVERTDGTFAL 102

[Close]

BLAST of CSPI02G00050 vs. Swiss-Prot
Match: DBP9_SCLS1 (ATP-dependent RNA helicase dbp9 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dbp9 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.1e-11
Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 1


Query: 30 TFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPII 89
          TFASLGLD+ L   +  K  F+ PTLVQ++AIP  L  R +L  A TG+GKT AYL+PI+
Sbjct: 25 TFASLGLDARLLQGIA-KQNFQSPTLVQSKAIPLTLEGRDILARAKTGSGKTAAYLLPIL 84

Query: 90 HHLQK 95
          H + K
Sbjct: 85 HSILK 88

[Close]

BLAST of CSPI02G00050 vs. Swiss-Prot
Match: DBP9_BOTFB (ATP-dependent RNA helicase dbp9 OS=Botryotinia fuckeliana (strain B05.10) GN=dbp9 PE=3 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 6.1e-11
Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 1


Query: 30 TFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPII 89
          TFASLGLD+ L   +  K  F+ PTLVQ++AIP  L  R +L  A TG+GKT AYL+PI+
Sbjct: 25 TFASLGLDARLLQGIA-KQNFQSPTLVQSKAIPLTLEGRDILARAKTGSGKTAAYLLPIL 84

Query: 90 HHLQK 95
          H + K
Sbjct: 85 HSILK 88

[Close]

BLAST of CSPI02G00050 vs. Swiss-Prot
Match: DDX31_HUMAN (Probable ATP-dependent RNA helicase DDX31 OS=Homo sapiens GN=DDX31 PE=1 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 7.9e-11
Identity = 45/142 (31.69%), Postives = 73/142 (51.41%), Query Frame = 1


Query: 2   SSSIKYTNEGVKTTTKKMVKEGE--VFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQ 61
           +SS+   N  +    + +VK+ +  VF S  F  LGL   L   +   +     T VQ Q
Sbjct: 201 TSSLFKNNPDIPELHRPVVKQVQEKVFTSAAFHELGLHPHLISTINTVLKMSSMTSVQKQ 260

Query: 62  AIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGVGGTLSVIKYRL 121
           +IP +L  R  LV + TG+GKT+AY +P++  LQ    + QR+DG +     L ++  R 
Sbjct: 261 SIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPY----ALVLVPTRE 320

Query: 122 VATGNHSTQLPLKAIILPFTSI 142
           +A  +  T   ++ ++ PFT I
Sbjct: 321 LALQSFDT---VQKLLKPFTWI 335

[Close]

BLAST of CSPI02G00050 vs. TrEMBL
Match: A0A0A0LKK2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000050 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.7e-52
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1


Query: 1   MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQA 60
           MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQA
Sbjct: 1   MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQA 60

Query: 61  IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV 109
           IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV
Sbjct: 61  IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV 108

[Close]

BLAST of CSPI02G00050 vs. TrEMBL
Match: A0A0R0I8R5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G072400 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.8e-31
Identity = 72/103 (69.90%), Postives = 82/103 (79.61%), Query Frame = 1


Query: 6   KYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAIL 65
           K  ++GVK   K      +VFASC+F+SLGLDS LC+QLRD++GFEVPTLVQAQAIP IL
Sbjct: 4   KKQSQGVKN--KGNGANNDVFASCSFSSLGLDSNLCEQLRDRLGFEVPTLVQAQAIPVIL 63

Query: 66  SRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV 109
           S RH LVNAATGTGKTVAYL PIIHHLQ    R QR+DGTFG+
Sbjct: 64  SGRHALVNAATGTGKTVAYLAPIIHHLQGYENRIQRSDGTFGI 104

[Close]

BLAST of CSPI02G00050 vs. TrEMBL
Match: I1L1T5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G072400 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 4.1e-30
Identity = 71/103 (68.93%), Postives = 81/103 (78.64%), Query Frame = 1


Query: 6   KYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAIL 65
           K  ++GVK   K      +VFASC+F+SLGLDS LC+QLRD++GFEVPTLVQAQAIP IL
Sbjct: 4   KKQSQGVKN--KGNGANNDVFASCSFSSLGLDSNLCEQLRDRLGFEVPTLVQAQAIPVIL 63

Query: 66  SRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV 109
           S RH LVNAATGTGKTVAYL PIIHHLQ    R QR+DGTF +
Sbjct: 64  SGRHALVNAATGTGKTVAYLAPIIHHLQGYENRIQRSDGTFAL 104

[Close]

BLAST of CSPI02G00050 vs. TrEMBL
Match: A0A0B2PT84_GLYSO (DEAD-box ATP-dependent RNA helicase 17 OS=Glycine soja GN=glysoja_026197 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 4.1e-30
Identity = 71/103 (68.93%), Postives = 81/103 (78.64%), Query Frame = 1


Query: 6   KYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAIL 65
           K  ++GVK   K      +VFASC+F+SLGLDS LC+QLRD++GFEVPTLVQAQAIP IL
Sbjct: 4   KKQSQGVKN--KGNGANNDVFASCSFSSLGLDSNLCEQLRDRLGFEVPTLVQAQAIPVIL 63

Query: 66  SRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV 109
           S RH LVNAATGTGKTVAYL PIIHHLQ    R QR+DGTF +
Sbjct: 64  SGRHALVNAATGTGKTVAYLAPIIHHLQGYENRIQRSDGTFAL 104

[Close]

BLAST of CSPI02G00050 vs. TrEMBL
Match: A0A151R1U0_CAJCA (DEAD-box ATP-dependent RNA helicase 17 OS=Cajanus cajan GN=KK1_042367 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.9e-30
Identity = 66/85 (77.65%), Postives = 74/85 (87.06%), Query Frame = 1


Query: 24  EVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVA 83
           +VFASC+F+SLGLDS LCDQLR+++GFEVPTLVQAQAIP ILS RH LVNAATGTGKTVA
Sbjct: 15  DVFASCSFSSLGLDSNLCDQLRERLGFEVPTLVQAQAIPIILSGRHALVNAATGTGKTVA 74

Query: 84  YLVPIIHHLQKSARRTQRADGTFGV 109
           YL PIIHHLQ    R QR+DGTF +
Sbjct: 75  YLAPIIHHLQSYDNRIQRSDGTFAL 99

[Close]

BLAST of CSPI02G00050 vs. TAIR10
Match: AT2G40700.1 (AT2G40700.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 120.2 bits (300), Expect = 1.3e-27
Identity = 62/105 (59.05%), Postives = 78/105 (74.29%), Query Frame = 1


Query: 4   SIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPA 63
           S + T +  K  +K   K G +FASC+F+SLGLD+ L DQL+++MGFE PTLVQAQAIP 
Sbjct: 7   SARETKQEAKDASK--AKSG-LFASCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPV 66

Query: 64  ILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV 109
           ILS R VLVNA TGTGKT+AYL P+IHHLQ  + +  R+ GTF +
Sbjct: 67  ILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFAL 108

[Close]

BLAST of CSPI02G00050 vs. TAIR10
Match: AT1G12770.1 (AT1G12770.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 64.3 bits (155), Expect = 8.4e-11
Identity = 36/96 (37.50%), Postives = 59/96 (61.46%), Query Frame = 1


Query: 12  VKTTTKKMVKEGE-------VFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAI 71
           VK    K+VKE +       +F++ +F  LGL  +L D L ++ GF VPT VQ+ A+PAI
Sbjct: 86  VKNDKMKVVKEKKPAEIVSPLFSAKSFEELGLPDSLLDSL-EREGFSVPTDVQSAAVPAI 145

Query: 72  LSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQ 101
           +     ++ + TG+GKT+AYL+PI+  +   A +++
Sbjct: 146 IKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSR 180

[Close]

BLAST of CSPI02G00050 vs. TAIR10
Match: AT4G34910.1 (AT4G34910.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 60.8 bits (146), Expect = 9.3e-10
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 1


Query: 21  KEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGK 80
           ++ E  A  +F  LGLDS L   L  K G E PTL+Q  AIP IL  + V+  A TG+GK
Sbjct: 38  EQKEEEAPKSFEELGLDSRLIRALTKK-GIEKPTLIQQSAIPYILEGKDVVARAKTGSGK 97

Query: 81  TVAYLVPIIHHL 93
           T+AYL+P++  L
Sbjct: 98  TLAYLLPLLQKL 108

[Close]

BLAST of CSPI02G00050 vs. TAIR10
Match: AT1G59990.1 (AT1G59990.1 DEA(D/H)-box RNA helicase family protein)

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-09
Identity = 41/98 (41.84%), Postives = 54/98 (55.10%), Query Frame = 1


Query: 3   SSIKYTNEGVKTTTKKMVKEGE--VFASCTFA--SLGLDSTLCDQLRDKMGFEVPTLVQA 62
           S  K+       T  ++ K+G    FA  T +  SLGL   +   LRD  GF+ P+L QA
Sbjct: 50  SDRKWVRGFASATEAEVEKKGNDTFFADHTVSWKSLGLSDNVSIALRDS-GFDRPSLTQA 109

Query: 63  QAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSA 97
             IP+ILS + V+V A TG+GKT  YL PII  L  +A
Sbjct: 110 VCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTA 146

[Close]

BLAST of CSPI02G00050 vs. TAIR10
Match: AT2G47330.1 (AT2G47330.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein)

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-09
Identity = 31/79 (39.24%), Postives = 46/79 (58.23%), Query Frame = 1


Query: 30  TFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPII 89
           TF   G  S +   ++ K  +E PT +Q QA+P +LS R V+  A TG+GKT A+++P+I
Sbjct: 229 TFEDCGFSSQIMSAIK-KQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMI 288

Query: 90  HHLQKSARRTQRADGTFGV 109
            H+       QR +G  GV
Sbjct: 289 VHIMDQP-ELQRDEGPIGV 305

[Close]

BLAST of CSPI02G00050 vs. NCBI nr
Match: gi|700205377|gb|KGN60496.1| (hypothetical protein Csa_2G000050 [Cucumis sativus])

HSP 1 Score: 213.8 bits (543), Expect = 2.4e-52
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1


Query: 1   MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQA 60
           MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQA
Sbjct: 1   MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQA 60

Query: 61  IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV 109
           IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV
Sbjct: 61  IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV 108

[Close]

BLAST of CSPI02G00050 vs. NCBI nr
Match: gi|449446634|ref|XP_004141076.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 17 [Cucumis sativus])

HSP 1 Score: 210.3 bits (534), Expect = 2.7e-51
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 1


Query: 1   MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQA 60
           MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQA
Sbjct: 1   MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQA 60

Query: 61  IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV 109
           IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTF +
Sbjct: 61  IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFAL 108

[Close]

BLAST of CSPI02G00050 vs. NCBI nr
Match: gi|659071481|ref|XP_008460023.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 17 isoform X2 [Cucumis melo])

HSP 1 Score: 203.8 bits (517), Expect = 2.5e-49
Identity = 101/108 (93.52%), Postives = 104/108 (96.30%), Query Frame = 1


Query: 1   MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQA 60
           MSSSI+Y NEGVKTT KKMVKEGE+FASCTFASLGLD TLCDQLRDKMGFEVPTLVQAQA
Sbjct: 1   MSSSIEYINEGVKTTAKKMVKEGEIFASCTFASLGLDPTLCDQLRDKMGFEVPTLVQAQA 60

Query: 61  IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV 109
           IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKS RRTQRADGTFG+
Sbjct: 61  IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSTRRTQRADGTFGI 108

[Close]

BLAST of CSPI02G00050 vs. NCBI nr
Match: gi|659071479|ref|XP_008460014.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucumis melo])

HSP 1 Score: 200.7 bits (509), Expect = 2.1e-48
Identity = 100/108 (92.59%), Postives = 103/108 (95.37%), Query Frame = 1


Query: 1   MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQA 60
           MSSSI+Y NEGVKTT KKMVKEGE+FASCTFASLGLD TLCDQLRDKMGFEVPTLVQAQA
Sbjct: 1   MSSSIEYINEGVKTTAKKMVKEGEIFASCTFASLGLDPTLCDQLRDKMGFEVPTLVQAQA 60

Query: 61  IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV 109
           IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKS RRTQRADGTF +
Sbjct: 61  IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSTRRTQRADGTFAL 108

[Close]

BLAST of CSPI02G00050 vs. NCBI nr
Match: gi|947088873|gb|KRH37538.1| (hypothetical protein GLYMA_09G072400 [Glycine max])

HSP 1 Score: 142.5 bits (358), Expect = 6.9e-31
Identity = 72/103 (69.90%), Postives = 82/103 (79.61%), Query Frame = 1


Query: 6   KYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAIL 65
           K  ++GVK   K      +VFASC+F+SLGLDS LC+QLRD++GFEVPTLVQAQAIP IL
Sbjct: 4   KKQSQGVKN--KGNGANNDVFASCSFSSLGLDSNLCEQLRDRLGFEVPTLVQAQAIPVIL 63

Query: 66  SRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV 109
           S RH LVNAATGTGKTVAYL PIIHHLQ    R QR+DGTFG+
Sbjct: 64  SGRHALVNAATGTGKTVAYLAPIIHHLQGYENRIQRSDGTFGI 104

The following BLAST results are available for this feature:

BLAST of CSPI02G00050 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RH17_ARATH	2.3e-26	59.05	DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana GN=RH17 PE=2 SV=1	[more]
RH17_ORYSJ	2.8e-24	57.14	DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa subsp. japonica GN=Os05g0...	[more]
DBP9_SCLS1	6.1e-11	53.85	ATP-dependent RNA helicase dbp9 OS=Sclerotinia sclerotiorum (strain ATCC 18683 /...	[more]
DBP9_BOTFB	6.1e-11	53.85	ATP-dependent RNA helicase dbp9 OS=Botryotinia fuckeliana (strain B05.10) GN=dbp...	[more]
DDX31_HUMAN	7.9e-11	31.69	Probable ATP-dependent RNA helicase DDX31 OS=Homo sapiens GN=DDX31 PE=1 SV=2	[more]

BLAST of CSPI02G00050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKK2_CUCSA	1.7e-52	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000050 PE=4 SV=1	[more]
A0A0R0I8R5_SOYBN	4.8e-31	69.90	Uncharacterized protein OS=Glycine max GN=GLYMA_09G072400 PE=3 SV=1	[more]
I1L1T5_SOYBN	4.1e-30	68.93	Uncharacterized protein OS=Glycine max GN=GLYMA_09G072400 PE=3 SV=1	[more]
A0A0B2PT84_GLYSO	4.1e-30	68.93	DEAD-box ATP-dependent RNA helicase 17 OS=Glycine soja GN=glysoja_026197 PE=3 SV...	[more]
A0A151R1U0_CAJCA	6.9e-30	77.65	DEAD-box ATP-dependent RNA helicase 17 OS=Cajanus cajan GN=KK1_042367 PE=3 SV=1	[more]

BLAST of CSPI02G00050 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G40700.1	1.3e-27	59.05	P-loop containing nucleoside triphosphate hydrolases superfamily pro...	[more]
AT1G12770.1	8.4e-11	37.50	P-loop containing nucleoside triphosphate hydrolases superfamily pro...	[more]
AT4G34910.1	9.3e-10	47.22	P-loop containing nucleoside triphosphate hydrolases superfamily pro...	[more]
AT1G59990.1	2.7e-09	41.84	DEA(D/H)-box RNA helicase family protein	[more]
AT2G47330.1	2.7e-09	39.24	P-loop containing nucleoside triphosphate hydrolases superfamily pro...	[more]

BLAST of CSPI02G00050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700205377\|gb\|KGN60496.1\|	2.4e-52	100.00	hypothetical protein Csa_2G000050 [Cucumis sativus]	[more]
gi\|449446634\|ref\|XP_004141076.1\|	2.7e-51	98.15	PREDICTED: DEAD-box ATP-dependent RNA helicase 17 [Cucumis sativus]	[more]
gi\|659071481\|ref\|XP_008460023.1\|	2.5e-49	93.52	PREDICTED: DEAD-box ATP-dependent RNA helicase 17 isoform X2 [Cucumis melo]	[more]
gi\|659071479\|ref\|XP_008460014.1\|	2.1e-48	92.59	PREDICTED: DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucumis melo]	[more]
gi\|947088873\|gb\|KRH37538.1\|	6.9e-31	69.90	hypothetical protein GLYMA_09G072400 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011545	DEAD/DEAH_box_helicase_dom
IPR014014	RNA_helicase_DEAD_Q_motif
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0005524	ATP binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009560	embryo sac egg cell differentiation
biological_process	GO:0008152	metabolic process
biological_process	GO:0006312	mitotic recombination
biological_process	GO:0006406	mRNA export from nucleus
biological_process	GO:0009640	photomorphogenesis
biological_process	GO:0000338	protein deneddylation
biological_process	GO:0051604	protein maturation
biological_process	GO:0006626	protein targeting to mitochondrion
biological_process	GO:0042991	transcription factor import into nucleus
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005622	intracellular
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G00050.1	CSPI02G00050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011545	DEAD/DEAH box helicase domain	PFAM	PF00270	DEAD	coord: 55..99 score: 1.7
IPR014014	RNA helicase, DEAD-box type, Q motif	PROFILE	PS51195	Q_MOTIF	coord: 29..58 score:
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 26..100 score: 4.0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 25..98 score: 8.19
None	No IPR available	PANTHER	PTHR24031	RNA HELICASE	coord: 22..106 score: 1.4
None	No IPR available	PANTHER	PTHR24031:SF248	DEAD-BOX ATP-DEPENDENT RNA HELICASE 17	coord: 22..106 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI02G00050	Csa2G000050	Cucumber (Chinese Long) v2	cpicuB065
CSPI02G00050	CmaCh05G014320	Cucurbita maxima (Rimu)	cmacpiB800
CSPI02G00050	Carg10766	Silver-seed gourd	carcpiB0603

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI02G00050	Cucurbita pepo (Zucchini)	cpecpiB100
CSPI02G00050	Cucurbita pepo (Zucchini)	cpecpiB129
CSPI02G00050	Cucurbita pepo (Zucchini)	cpecpiB545
CSPI02G00050	Bottle gourd (USVL1VR-Ls)	cpilsiB096
CSPI02G00050	Melon (DHL92) v3.6.1	cpimedB133
CSPI02G00050	Cucumber (Gy14) v2	cgybcpiB056
CSPI02G00050	Silver-seed gourd	carcpiB0935
CSPI02G00050	Cucumber (Chinese Long) v3	cpicucB080
CSPI02G00050	Watermelon (97103) v2	cpiwmbB105
CSPI02G00050	Wax gourd	cpiwgoB130
CSPI02G00050	Cucurbita maxima (Rimu)	cmacpiB181
CSPI02G00050	Cucumber (Gy14) v1	cgycpiB152
CSPI02G00050	Cucurbita moschata (Rifu)	cmocpiB166
CSPI02G00050	Cucurbita moschata (Rifu)	cmocpiB787
CSPI02G00050	Melon (DHL92) v3.5.1	cpimeB140
CSPI02G00050	Watermelon (Charleston Gray)	cpiwcgB102
CSPI02G00050	Watermelon (97103) v1	cpiwmB165