Carg08913 (gene) Silver-seed gourd

Overview
NameCarg08913
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionU6 snRNA-associated Sm-like protein LSm5
LocationCucurbita_argyrosperma_scaffold_020 : 711796 .. 714801 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATAGGAGGCGGGACGGGAAATCACTAAATAAGACCTCGCGCCTCTTTGCATTTTTAACTGAATCGCTCACCTTCGCGGAAGACCTCCAATCCATGGCCAACAATCCCTCGCAGCTACTGCCCTCAGGTTCGCTTTCTGCTTCTTCTTCGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTCATTTTCCCCTCCTATTTCGGTTGAATTGGACTCTAATTTACTTGGTTTATGGTGAGAATTTGCAGAGTTGATCGATCGATGTATAGGGTCGAAAATATGGGTCATTATGAAAGGCGACAAGGAACTCGTCGGTACTCTCAGAGGATTCGATGTTTATGTCAACATGGTTCTTGAAGATGTTACTGAATAGTAAGGGCTTTTATGAGATCTAAACTCACATTTCTATGGTTTGCTCATTGTATTTCGCATAATTTGTTGTGTTTGAGTCTGTTCTGTTTGTTCTCTTTCTCTTATGAAGTGTTTGATGTGTTGATTTTAGTGTGGGGGAATATGAGGCGAGTAGAGGAAAGTATTTGGCTCAAGGTCGTATTTGTCTGTGTTTAAGGGATTGAAACGTGATAGAAAGTGACAGAATGTTGCGCTAGAGCAATTTGAGTTATTGAGCATGTGATTTTCATTGAATTATGGAGAGCTTTTGAGTTAAGGTTTAGAAATTCCCTTATTCAAATTTTCTGAGGGAACTGGACACTGGAGGTTTCTTTAGAAGCTAAGTAAAGTGATCCATAATCTCATGCCATACTGAAATAGAAGGAAAAGAGTTAACAAGAGAGGAGGATAACCTTAGCCATTCTCATTTCCTGCCAAGATTCCGTTGATGAAAGTGTTTCTTTTCATGGAGGTAAGGTAAAGTAGAGAACCAAAATCTCTCGTAAAGTAGAAGGAAAAAGTTGGCTCAAGTGTCGAGCAGTACTCTGCCTAGGTTGATACACATTGTTTCTTTTTCCACGCCTGATTCTCAACAAATTGGGGGTCAGTAATCGTGTTCCCTATCACTGTACAATTTTAATACCTTCTTCTATGTTGGGGATAGGTAAAATTAGCAAACAGATTTAAGCGGGATACATGATTGTTATTGTTCTATTCTTTCCCTTTTGGAGCTGTAAAGCTAGCAGATTATTGCATACTTTTCTCTTCCGGGGTCCGGTTGTGGATATATAACCAGATTGGGAAGCTCATAGTTGAGCATCAAGTTCTGAATGTGATGATCAAGATGTTTTAATTAACTCATCATTGGAAAACTCATGATGTTTTTCTTATTAAATATATGAAAATTGACTTGAATTCTCAATGGTTACTAACAAAAGGAGTAACGATTTGGTAAGAACACAAGGAGTTGTTAAATTGTTAAATTGTCTTTGCTTATGTTCTTAGAGCGACCCCTTCTAGTTTACTGACCATTCAAGCTTTTCATAGAACTTGTTTCAGCTTATTCTGATGTTTCCAGTACTGGGTTAATATGGATATTGAAGTGGTCATAAGTTCGTAATCTTCTTTCGTTCAAAAATGGGTGGCTCCATAAAGCCTACATCTAGATTATAATTAACCAATAAACGATCCATTCAACAAGAGTACTTGTTGTTGGAGCTAATATCACCATTGCTGATTTTCTTTCCTGTTCTACTAATCAAAATCTAGGGTGCGCTCCATTGGGCCTAAAATTTCTATCTTGGCACGTCTTTTATGCTTGTGGCATGTACGAGTTGCTGTCTTTTTTATGAACCTAATGACTCTTTGTTTTAATGAAGACTCATAGCGCTCTCTAGAATCTACTGAATGGTTTCACTCTCTCTGTATTACATTGTAGTGAGATCACTGCTGAGGGGAGACGGATAACAAAGCTGGATCAGATTCTACTCAATGGGAACAACATTGCTATTGTAAGTGACAATCACAGTTTTATTATTTTCATGCACTTGTTTGGGGAAGCCACAAGTCTTTAGACGATCTCCTCCTAGACCAATGAACAATGATTGTGTAAGAGGCCAAGCTTCATGATGGTTGTGGGTGTGCCCCAATCCCCATCTTTATAATGATAATAATAGTAATTTAAAGGAACCATCATTGTTCGTCCCAATGGTTAAATAGTCGAGTCTTAACTCACGTGCCTCTTATGTCATTCATATAAGTAGTTGTTTCATGAGATCAGTCAGTCATTCATATAAGTAGTTGTTTCATGAGATCAGTCAATGTGTGAGCAAGTTGACGTGGACGTTATTTAAAATTAGCCAACATGCACATGAACTCATATAAACAAATCTGTGCGAAAAAAACAAATAGAGAACTCAGAGTTGGTGTAGTTGTCCTTTTAAGATTAGTCAATATGATTGTTAGCTGCTCATCTAGACGAACTAGAAGTTCTTATTAACGTCTGATTGTTGAAGCAAATTGTTAAATTGCAGCTCGTCCCCGGTGGATCACCTGACCCAGAATAAGTGCAGAATATGAATAGCATGTTGTTCTGGTGGGGAAACCTTGCACGATTTTCATGGTTGGCTCCCAGCACCAAACATTTACTTTTCTATGGACGTAGAAAGACTCAGGTGACATCTTTCATGTATTTGATTGAAGTAAAGCGTCATAGTTTCGTGTTTCGTCGATGTGAATCTAGCTTTCTTCATATTCACTGCTTCGGCTGGAAATCTTTTGGCTTAATTCTGAATTCGACTGCTTTCAATGGGTTCACAAATTTTTTTAAAAGCTAGAGCTGTAATACCCTGAAGTAAAACACTTCTCCTGATTTTAAAACAATGAAGGAGATCGAATCAAATCCATAATCCAGCCAAGTCATACAAAGGAAGTTTGGTTTTATTATCACTTATAATTAGATTACAAGTTTGATGAAGTGTTGTTAAGAGTGTGTTTGGTATATCTTCTAATTTAAGTATTTTTTTCTTAAAATATTTTTAATAAAAGGCATTTTTCTACCTTTTTGAAAGGTATTTTTATGCGTACTTGGAAGGTTTTTGAT

mRNA sequence

AATAGGAGGCGGGACGGGAAATCACTAAATAAGACCTCGCGCCTCTTTGCATTTTTAACTGAATCGCTCACCTTCGCGGAAGACCTCCAATCCATGGCCAACAATCCCTCGCAGCTACTGCCCTCAGAGTTGATCGATCGATGTATAGGGTCGAAAATATGGGTCATTATGAAAGGCGACAAGGAACTCGTCGGTACTCTCAGAGGATTCGATGTTTATGTCAACATGGTTCTTGAAGATGTTACTGAATATGAGATCACTGCTGAGGGGAGACGGATAACAAAGCTGGATCAGATTCTACTCAATGGGAACAACATTGCTATTCTCGTCCCCGGTGGATCACCTGACCCAGAATAAGTGCAGAATATGAATAGCATGTTGTTCTGGTGGGGAAACCTTGCACGATTTTCATGGTTGGCTCCCAGCACCAAACATTTACTTTTCTATGGACGTAGAAAGACTCAGGTGACATCTTTCATGTATTTGATTGAAGTAAAGCGTCATAGTTTCGTGTTTCGTCGATGTGAATCTAGCTTTCTTCATATTCACTGCTTCGGCTGGAAATCTTTTGGCTTAATTCTGAATTCGACTGCTTTCAATGGGTTCACAAATTTTTTTAAAAGCTAGAGCTGTAATACCCTGAAGTAAAACACTTCTCCTGATTTTAAAACAATGAAGGAGATCGAATCAAATCCATAATCCAGCCAAGTCATACAAAGGAAGTTTGGTTTTATTATCACTTATAATTAGATTACAAGTTTGATGAAGTGTTGTTAAGAGTGTGTTTGGTATATCTTCTAATTTAAGTATTTTTTTCTTAAAATATTTTTAATAAAAGGCATTTTTCTACCTTTTTGAAAGGTATTTTTATGCGTACTTGGAAGGTTTTTGAT

Coding sequence (CDS)

AATAGGAGGCGGGACGGGAAATCACTAAATAAGACCTCGCGCCTCTTTGCATTTTTAACTGAATCGCTCACCTTCGCGGAAGACCTCCAATCCATGGCCAACAATCCCTCGCAGCTACTGCCCTCAGAGTTGATCGATCGATGTATAGGGTCGAAAATATGGGTCATTATGAAAGGCGACAAGGAACTCGTCGGTACTCTCAGAGGATTCGATGTTTATGTCAACATGGTTCTTGAAGATGTTACTGAATATGAGATCACTGCTGAGGGGAGACGGATAACAAAGCTGGATCAGATTCTACTCAATGGGAACAACATTGCTATTCTCGTCCCCGGTGGATCACCTGACCCAGAATAA

Protein sequence

NRRRDGKSLNKTSRLFAFLTESLTFAEDLQSMANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Homology
[Close]
BLAST of Carg08913 vs. NCBI nr
Match: XP_004152020.2 (PREDICTED: sm-like protein LSM5 [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 1.4e-42
Identity = 90/101 (89.11%), Postives = 92/101 (91.09%), Query Frame = 0 

Query: 18  FLTESLTFAEDLQSMANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMV 77
           F   SL+F    + MA NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMV
Sbjct: 49  FFIHSLSFPVKSKFMATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMV 108

Query: 78  LEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE 119
           LEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 109 LEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE 149

[Close]
BLAST of Carg08913 vs. NCBI nr
Match: XP_008454507.1 (PREDICTED: sm-like protein LSM5 [Cucumis melo])

HSP 1 Score: 181.4 bits (459), Expect = 1.8e-42
Identity = 90/101 (89.11%), Postives = 92/101 (91.09%), Query Frame = 0 

Query: 18  FLTESLTFAEDLQSMANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMV 77
           F   SL+F    + MA NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMV
Sbjct: 40  FFFHSLSFPVKSKFMATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMV 99

Query: 78  LEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE 119
           LEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 100 LEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE 140

[Close]
BLAST of Carg08913 vs. NCBI nr
Match: XP_021659196.1 (sm-like protein LSM5 [Hevea brasiliensis])

HSP 1 Score: 180.3 bits (456), Expect = 3.9e-42
Identity = 89/97 (91.75%), Postives = 90/97 (92.78%), Query Frame = 0 

Query: 22  SLTFAEDLQSMANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDV 81
           SL     L  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDV
Sbjct: 15  SLLKLGSLNPMANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDV 74

Query: 82  TEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE 119
           TEYE+TAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 75  TEYEVTAEGRRITKLDQILLNGNNIAILVPGGSPDPE 111

[Close]
BLAST of Carg08913 vs. NCBI nr
Match: XP_004504703.1 (PREDICTED: sm-like protein LSM5 [Cicer arietinum] >XP_012085226.1 sm-like protein LSM5 [Jatropha curcas] >XP_013457335.1 sm-like protein LSM5 [Medicago truncatula] >XP_015575945.1 sm-like protein LSM5 [Ricinus communis] >XP_015957485.1 sm-like protein LSM5 [Arachis duranensis] >XP_016190536.1 sm-like protein LSM5 [Arachis ipaensis] >XP_016708763.1 PREDICTED: sm-like protein LSM5 [Gossypium hirsutum] >XP_017648195.1 PREDICTED: sm-like protein LSM5 [Gossypium arboreum] >XP_017970003.1 PREDICTED: sm-like protein LSM5 [Theobroma cacao] >XP_021274360.1 sm-like protein LSM5 [Herrania umbratica] >XP_021631942.1 sm-like protein LSM5 [Manihot esculenta] >XP_021683952.1 sm-like protein LSM5 [Hevea brasiliensis] >XP_022159125.1 sm-like protein LSM5 [Momordica charantia] >XP_022758624.1 sm-like protein LSM5 [Durio zibethinus] >XP_022930959.1 sm-like protein LSM5 [Cucurbita moschata] >XP_022995599.1 sm-like protein LSM5 [Cucurbita maxima] >XP_023532583.1 sm-like protein LSM5 [Cucurbita pepo subsp. pepo] >XP_023923008.1 sm-like protein LSM5 [Quercus suber] >XP_023923009.1 sm-like protein LSM5 [Quercus suber] >XP_023923155.1 sm-like protein LSM5 [Quercus suber] >XP_025691321.1 sm-like protein LSM5 [Arachis hypogaea] >XP_025639691.1 sm-like protein LSM5 [Arachis hypogaea] >XP_025639692.1 sm-like protein LSM5 [Arachis hypogaea] >AFK37213.1 unknown [Medicago truncatula] >EOX93980.1 Small nuclear ribonucleoprotein family protein [Theobroma cacao] >KDP26465.1 hypothetical protein JCGZ_17623 [Jatropha curcas] >KEH31366.1 u6 snRNA-associated-like-Smprotein [Medicago truncatula] >KHG13196.1 U6 snRNA-associated Sm-like protein LSm5 [Gossypium arboreum] >KHG18800.1 U6 snRNA-associated Sm-like protein LSm5 [Gossypium arboreum] >OAY32763.1 hypothetical protein MANES_13G044200 [Manihot esculenta] >GAU40652.1 hypothetical protein TSUD_83300 [Trifolium subterraneum] >OMO51904.1 hypothetical protein COLO4_37469 [Corchorus olitorius] >OMO99889.1 hypothetical protein CCACVL1_03561 [Corchorus capsularis] >POE97164.1 sm-like protein lsm5 [Quercus suber] >POE97355.1 sm-like protein lsm5 [Quercus suber] >PPR94282.1 hypothetical protein GOBAR_AA26387 [Gossypium barbadense])

HSP 1 Score: 179.5 bits (454), Expect = 6.7e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 32  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 91
           MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1   MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 92  RITKLDQILLNGNNIAILVPGGSPDPE 119
           RITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 61  RITKLDQILLNGNNIAILVPGGSPDPE 87

[Close]
BLAST of Carg08913 vs. NCBI nr
Match: ADR71256.1 (U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis])

HSP 1 Score: 179.1 bits (453), Expect = 8.8e-42
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 32  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 91
           MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYE+TAEGR
Sbjct: 1   MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEVTAEGR 60

Query: 92  RITKLDQILLNGNNIAILVPGGSPDPE 119
           RITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 61  RITKLDQILLNGNNIAILVPGGSPDPE 87

[Close]
BLAST of Carg08913 vs. TAIR10
Match: AT5G48870.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 169.1 bits (427), Expect = 1.6e-42
Identity = 81/85 (95.29%), Postives = 84/85 (98.82%), Query Frame = 0 

Query: 32  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 91
           MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVG L+GFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1   MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGR 60

Query: 92  RITKLDQILLNGNNIAILVPGGSPD 117
           R+TKLDQILLNGNNIAILVPGGSP+
Sbjct: 61  RVTKLDQILLNGNNIAILVPGGSPE 85

[Close]
BLAST of Carg08913 vs. TAIR10
Match: AT4G30330.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 50.4 bits (119), Expect = 8.5e-07
Identity = 28/77 (36.36%), Postives = 44/77 (57.14%), Query Frame = 0 

Query: 41  PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKL 100
           P  LI R + SK    IW+  + D  + G + GFD Y+N+VL++  E  I  + R+   L
Sbjct: 13  PINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKKTRK--PL 72

Query: 101 DQILLNGNNIAILVPGG 114
            +ILL G+NI +++  G
Sbjct: 73  GRILLKGDNITLMMNAG 87

[Close]
BLAST of Carg08913 vs. TAIR10
Match: AT2G18740.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.9e-06
Identity = 28/77 (36.36%), Postives = 43/77 (55.84%), Query Frame = 0 

Query: 41  PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKL 100
           P  LI R + SK    IW+  + D  + G + GFD Y+N+VL++  E  I    R+   L
Sbjct: 13  PINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKNTRK--PL 72

Query: 101 DQILLNGNNIAILVPGG 114
            +ILL G+NI +++  G
Sbjct: 73  GRILLKGDNITLMMNTG 87

[Close]
BLAST of Carg08913 vs. TAIR10
Match: AT3G14080.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 43.1 bits (100), Expect = 1.4e-04
Identity = 21/74 (28.38%), Postives = 38/74 (51.35%), Query Frame = 0 

Query: 36  PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITK 95
           P ++  S  +   +  K+ V+++  ++L+GTLR FD + N VLE   E  I  E      
Sbjct: 6   PEEIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIP 65

Query: 96  LDQILLNGNNIAIL 110
           L   ++ G N+ ++
Sbjct: 66  LGLYVIRGENVVLI 79

[Close]
BLAST of Carg08913 vs. TAIR10
Match: AT1G21190.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 42.0 bits (97), Expect = 3.0e-04
Identity = 21/49 (42.86%), Postives = 30/49 (61.22%), Query Frame = 0 

Query: 41 PSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAE 90
          P +LI   I  +I+V ++ D+EL G L  FD ++NM+L DV E   T E
Sbjct: 12 PLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIE 60

[Close]
BLAST of Carg08913 vs. Swiss-Prot
Match: sp|Q9FKB0|LSM5_ARATH (Sm-like protein LSM5 OS=Arabidopsis thaliana OX=3702 GN=LSM5 PE=1 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 3.0e-41
Identity = 81/85 (95.29%), Postives = 84/85 (98.82%), Query Frame = 0 

Query: 32  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 91
           MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVG L+GFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1   MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGR 60

Query: 92  RITKLDQILLNGNNIAILVPGGSPD 117
           R+TKLDQILLNGNNIAILVPGGSP+
Sbjct: 61  RVTKLDQILLNGNNIAILVPGGSPE 85

[Close]
BLAST of Carg08913 vs. Swiss-Prot
Match: sp|Q2HJH0|LSM5_BOVIN (U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus OX=9913 GN=LSM5 PE=3 SV=3)

HSP 1 Score: 135.2 bits (339), Expect = 4.8e-31
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 0 

Query: 35  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRIT 94
           NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8   NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67

Query: 95  KLDQILLNGNNIAILVPGG 114
           KLDQILLNGNNI +LVPGG
Sbjct: 68  KLDQILLNGNNITMLVPGG 86

[Close]
BLAST of Carg08913 vs. Swiss-Prot
Match: sp|Q9Y4Y9|LSM5_HUMAN (U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens OX=9606 GN=LSM5 PE=1 SV=3)

HSP 1 Score: 135.2 bits (339), Expect = 4.8e-31
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 0 

Query: 35  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRIT 94
           NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8   NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67

Query: 95  KLDQILLNGNNIAILVPGG 114
           KLDQILLNGNNI +LVPGG
Sbjct: 68  KLDQILLNGNNITMLVPGG 86

[Close]
BLAST of Carg08913 vs. Swiss-Prot
Match: sp|P62322|LSM5_MOUSE (U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus OX=10090 GN=Lsm5 PE=3 SV=2)

HSP 1 Score: 135.2 bits (339), Expect = 4.8e-31
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 0 

Query: 35  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRIT 94
           NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8   NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67

Query: 95  KLDQILLNGNNIAILVPGG 114
           KLDQILLNGNNI +LVPGG
Sbjct: 68  KLDQILLNGNNITMLVPGG 86

[Close]
BLAST of Carg08913 vs. Swiss-Prot
Match: sp|Q5R628|LSM5_PONAB (U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii OX=9601 GN=LSM5 PE=3 SV=3)

HSP 1 Score: 135.2 bits (339), Expect = 4.8e-31
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 0 

Query: 35  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRIT 94
           NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8   NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67

Query: 95  KLDQILLNGNNIAILVPGG 114
           KLDQILLNGNNI +LVPGG
Sbjct: 68  KLDQILLNGNNITMLVPGG 86

[Close]
BLAST of Carg08913 vs. TrEMBL
Match: tr|A0A1S3BZJ2|A0A1S3BZJ2_CUCME (sm-like protein LSM5 OS=Cucumis melo OX=3656 GN=LOC103494906 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.2e-42
Identity = 90/101 (89.11%), Postives = 92/101 (91.09%), Query Frame = 0 

Query: 18  FLTESLTFAEDLQSMANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMV 77
           F   SL+F    + MA NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMV
Sbjct: 40  FFFHSLSFPVKSKFMATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMV 99

Query: 78  LEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE 119
           LEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 100 LEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE 140

[Close]
BLAST of Carg08913 vs. TrEMBL
Match: tr|A0A2P4KVW6|A0A2P4KVW6_QUESU (Sm-like protein lsm5 OS=Quercus suber OX=58331 GN=CFP56_20016 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.4e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 32  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 91
           MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1   MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 92  RITKLDQILLNGNNIAILVPGGSPDPE 119
           RITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 61  RITKLDQILLNGNNIAILVPGGSPDPE 87

[Close]
BLAST of Carg08913 vs. TrEMBL
Match: tr|A0A0B0NQ45|A0A0B0NQ45_GOSAR (U6 snRNA-associated Sm-like protein LSm5 OS=Gossypium arboreum OX=29729 GN=F383_03135 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.4e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 32  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 91
           MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1   MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 92  RITKLDQILLNGNNIAILVPGGSPDPE 119
           RITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 61  RITKLDQILLNGNNIAILVPGGSPDPE 87

[Close]
BLAST of Carg08913 vs. TrEMBL
Match: tr|I3SAC1|I3SAC1_MEDTR (U6 snRNA-associated-like-Smprotein OS=Medicago truncatula OX=3880 GN=25493392 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.4e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 32  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 91
           MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1   MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 92  RITKLDQILLNGNNIAILVPGGSPDPE 119
           RITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 61  RITKLDQILLNGNNIAILVPGGSPDPE 87

[Close]
BLAST of Carg08913 vs. TrEMBL
Match: tr|A0A061DMN8|A0A061DMN8_THECC (Small nuclear ribonucleoprotein family protein OS=Theobroma cacao OX=3641 GN=TCM_003004 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.4e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 32  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 91
           MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1   MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 92  RITKLDQILLNGNNIAILVPGGSPDPE 119
           RITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 61  RITKLDQILLNGNNIAILVPGGSPDPE 87

The following BLAST results are available for this feature:
BLAST of Carg08913 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004152020.21.4e-4289.11PREDICTED: sm-like protein LSM5 [Cucumis sativus][more]
XP_008454507.11.8e-4289.11PREDICTED: sm-like protein LSM5 [Cucumis melo][more]
XP_021659196.13.9e-4291.75sm-like protein LSM5 [Hevea brasiliensis][more]
XP_004504703.16.7e-42100.00PREDICTED: sm-like protein LSM5 [Cicer arietinum] >XP_012085226.1 sm-like protei... [more]
ADR71256.18.8e-4298.85U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis][more]
BLAST of Carg08913 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G48870.11.6e-4295.29Small nuclear ribonucleoprotein family protein[more]
AT4G30330.18.5e-0736.36Small nuclear ribonucleoprotein family protein[more]
AT2G18740.11.9e-0636.36Small nuclear ribonucleoprotein family protein[more]
AT3G14080.11.4e-0428.38Small nuclear ribonucleoprotein family protein[more]
AT1G21190.13.0e-0442.86Small nuclear ribonucleoprotein family protein[more]
BLAST of Carg08913 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FKB0|LSM5_ARATH3.0e-4195.29Sm-like protein LSM5 OS=Arabidopsis thaliana OX=3702 GN=LSM5 PE=1 SV=1[more]
sp|Q2HJH0|LSM5_BOVIN4.8e-3179.75U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus OX=9913 GN=LSM5 PE=3 SV=3[more]
sp|Q9Y4Y9|LSM5_HUMAN4.8e-3179.75U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens OX=9606 GN=LSM5 PE=1 SV... [more]
sp|P62322|LSM5_MOUSE4.8e-3179.75U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus OX=10090 GN=Lsm5 PE=3 S... [more]
sp|Q5R628|LSM5_PONAB4.8e-3179.75U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii OX=9601 GN=LSM5 PE=3 SV... [more]
BLAST of Carg08913 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BZJ2|A0A1S3BZJ2_CUCME1.2e-4289.11sm-like protein LSM5 OS=Cucumis melo OX=3656 GN=LOC103494906 PE=4 SV=1[more]
tr|A0A2P4KVW6|A0A2P4KVW6_QUESU4.4e-42100.00Sm-like protein lsm5 OS=Quercus suber OX=58331 GN=CFP56_20016 PE=4 SV=1[more]
tr|A0A0B0NQ45|A0A0B0NQ45_GOSAR4.4e-42100.00U6 snRNA-associated Sm-like protein LSm5 OS=Gossypium arboreum OX=29729 GN=F383_... [more]
tr|I3SAC1|I3SAC1_MEDTR4.4e-42100.00U6 snRNA-associated-like-Smprotein OS=Medicago truncatula OX=3880 GN=25493392 PE... [more]
tr|A0A061DMN8|A0A061DMN8_THECC4.4e-42100.00Small nuclear ribonucleoprotein family protein OS=Theobroma cacao OX=3641 GN=TCM... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom_sf
IPR033871LSm5
IPR001163LSM_dom_euk/arc
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg08913-RACarg08913-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 43..111
e-value: 8.0E-21
score: 85.2
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 44..111
e-value: 3.4E-20
score: 71.4
NoneNo IPR availableGENE3DG3DSA:2.30.30.100coord: 40..116
e-value: 2.6E-26
score: 93.0
IPR033871Sm-like protein LSm5PANTHERPTHR20971U6 SNRNA-ASSOCIATED PROTEINcoord: 32..114
IPR033871Sm-like protein LSm5CDDcd01732LSm5coord: 38..113
e-value: 8.06856E-52
score: 159.332
IPR010920LSM domain superfamilySUPERFAMILYSSF50182Sm-like ribonucleoproteinscoord: 39..112

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg08913Cla002732Watermelon (97103) v1carwmB0779
Carg08913MELO3C018062Melon (DHL92) v3.5.1carmeB0772
Carg08913ClCG07G001790Watermelon (Charleston Gray)carwcgB0760
Carg08913Cucsa.140280Cucumber (Gy14) v1carcgyB0884
Carg08913CmaCh02G016940Cucurbita maxima (Rimu)carcmaB1084
Carg08913CmaCh19G001430Cucurbita maxima (Rimu)carcmaB1082
Carg08913CmoCh02G017370Cucurbita moschata (Rifu)carcmoB1057
Carg08913CmoCh19G001600Cucurbita moschata (Rifu)carcmoB1055
Carg08913Lsi05G011040Bottle gourd (USVL1VR-Ls)carlsiB717
Carg08913Cp4.1LG05g00720Cucurbita pepo (Zucchini)carcpeB1099
Carg08913Cp4.1LG15g01350Cucurbita pepo (Zucchini)carcpeB1094
Carg08913MELO3C018062.2Melon (DHL92) v3.6.1carmedB0786
Carg08913Cla97C07G130050Watermelon (97103) v2carwmbB0821
Carg08913Bhi05G000073Wax gourdcarwgoB0916
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg08913Silver-seed gourdcarcarB086
Carg08913Silver-seed gourdcarcarB264
Carg08913Silver-seed gourdcarcarB273
Carg08913Silver-seed gourdcarcarB610
Carg08913Silver-seed gourdcarcarB615
Carg08913Cucumber (Gy14) v2carcgybB0773
Carg08913Cucumber (Gy14) v2carcgybB0772
Carg08913Cucumber (Gy14) v1carcgyB0887
Carg08913Cucurbita maxima (Rimu)carcmaB1075
Carg08913Cucurbita maxima (Rimu)carcmaB1079
Carg08913Cucurbita maxima (Rimu)carcmaB1086
Carg08913Cucurbita maxima (Rimu)carcmaB1089
Carg08913Cucurbita maxima (Rimu)carcmaB1090
Carg08913Cucurbita moschata (Rifu)carcmoB1049
Carg08913Cucurbita moschata (Rifu)carcmoB1052
Carg08913Cucurbita moschata (Rifu)carcmoB1058
Carg08913Cucurbita moschata (Rifu)carcmoB1061
Carg08913Cucurbita moschata (Rifu)carcmoB1062
Carg08913Cucurbita pepo (Zucchini)carcpeB1087
Carg08913Cucurbita pepo (Zucchini)carcpeB1096
Carg08913Cucurbita pepo (Zucchini)carcpeB1097
Carg08913Cucurbita pepo (Zucchini)carcpeB1098
Carg08913Cucurbita pepo (Zucchini)carcpeB1101
Carg08913Wild cucumber (PI 183967)carcpiB0814
Carg08913Wild cucumber (PI 183967)carcpiB0816
Carg08913Cucumber (Chinese Long) v2carcuB0796
Carg08913Cucumber (Chinese Long) v3carcucB0817
Carg08913Cucumber (Chinese Long) v3carcucB0819
Carg08913Bottle gourd (USVL1VR-Ls)carlsiB713
Carg08913Melon (DHL92) v3.5.1carmeB0780
Carg08913Watermelon (Charleston Gray)carwcgB0757
Carg08913Watermelon (97103) v1carwmB0782
Carg08913Watermelon (97103) v1carwmB0785
Carg08913Watermelon (97103) v2carwmbB0817
Carg08913Watermelon (97103) v2carwmbB0819
Carg08913Wax gourdcarwgoB0911