CmaCh19G001430 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh19G001430
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionU6 snRNA-associated Sm-like protein LSm5
LocationCma_Chr19 : 913104 .. 918254 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCGCTCGATGGCTCGTCGAAGGGAATAAGAAATCGCGCCTCTTCGCACTTCACTGACACTTGCGGCTTCAACTCGCAGTCTTTCTGAAAAACCTTTAATCCATGGCTAACAATCCTTCGCAGCTACTGCCCTCAGGTTTGCTTCTGCTTCTCCTTCGCTTAATTTCTCATTTCCCCCTCCTATTTCGCCGGAAATGAACTCTTATTTACTGCGTTTCTTGGTGGGGATTTGCAGAGTTAATCGACCGATGTATAGGGTCTAAAATATGGGTCATTATGAAGGGCGACAAAGAGCTTGTTGGCACTCTTAAAGGATTTGATGTTTATGTCAACATGGTTCTTGAAGATGTTACTGAATAGTAAGTGCCTCTACAAGATCTAAACTCATATTTCTTTGGTTTGCTCATGTGGGTTGTCTTTGTATTTTGCATAAATTGTTCTGTTTCAATCTGTCATGTTTGATCGCTTTATTTTATTAAGTGTTTCTGTCTGTGTTAAGGGATTGAATGTTAGGAATCACGACTCTCCACCGAGCATAAGCTCTCGTTGCTTTGGTTTTGGTTTCCTTAAAAGACCTCATACCAATGGTGATAGCGTTCATTCCTTACTTATAAACCCATGATCTTCCTCTTAATTAGCCAATGTGGGACTACTCCTTTCAATAATTCTCATCAATCCTCCCCTCGAACGAAGTACACTATATAGTCTCCATTGAGGCCTATGGAGCCCTCAAATAGTCTCCCCTTGATCGAGGTTCGATTCTTTCTCTTGAGCTCTCGAATAAAGTACCACCATTTCTTTGACACTTGAGTCACTTTCGACTACACCTTCGAGACTTACAACTTCTTTGTTCGACATTTGAGGATTCTATTGACATGACTAAATTAAGGATGTGGCTCTAATACCATGTTAGGAATCACGGCTCTCCACAATGGTATGATATTGTCCACTTTGAGTATAAGCTCTCATGGCTTTGCTTTTGGTTTCCCCAAAAGGCCTCATACCAATGGAGATAGCGTTCGTTCCTTATTTATAAACCCATGATCTTCCTCTTAATTAGCCAACGTGGGACTACTCCTTTCAATAATCCTCCCCTCGAGCAAAGTACACCATATAACCTCCCTTGAGGCCTATGGAGCCCTCGAATAGCCTCTCCTTAATCGAGGCTCGACTCCTTCTCTTGAACCCTCGAATAAAGTACACACTTTGTTCGACACTTGAGTCACTTTTGAGTACACTTTCGAGGCTCACAACTTATTTGTTCGATATTTGAGGATTCTATTCACATGGTTAAGTTGAGGACATGACTCTGATACCATGTTAGGAATCACAACTCTCCATAATGGTATGATATTGTCCATTTTGAACATAAGCTCCTGTGGCTTTGCTTTTGGTTTTCCTAAAAGGTCTCATACCAATGGAGATAGTGTTCGTTACTTATAAACCCACGATCTTACTCTTAATTAGCCAACGTGGGACTACTCCTTTCAATAATTCTCACCATTGAAAACATGATTTGAGCGAGAGAAAAAGTTGCGCTAGTGCAATTTGAATTATGGAGTATGGAATTTCATTGAATCCGCTCTGTTCTTCTCCAATCTTAGGAGTGGGGTTGGAGGTTGGCTTTGGAGAGCTTTTGAGTTAAGGCTTAGAAACCCCTTTGTTCAAATTTTTGAAGTGAACTGAACAGTGTAGATTTCTTCAGAAGTTGAAGAAAGTGGTTGATAATCTCATGCCGTGTTGAAATAGAAGGAAAAGAATTAATAAGAGAGGCGGATTGGTACTTTTTGGACAAGGTTCTCATGAAGAACGGCATTGGGTATAAGTGGAGGGCTTGGATCTTGGGCAGCATTAAAATGGTTGAGTACTATATTCTAATTTGTGGTAGGCCCAGTGGATGATCCGAGTTATGAGAGGCCTTAGGTGTCACAATCGCCCTTTTCTTGGCAATGGATTTGGCGATTGTGCGGCATTCACTCTCAACAGTGAGTGAGTTAAGCTAATTTAGGATCGTGTCTCCTACGGTCGGACAATGTATGCTCAAGCCTTTGGCCCTGATTTGAGAAGAAAGTTTTAGAAAGCGGGGCAGAGAGATTTTGAATGAAAGGTTGAGAGAGATTGAAAACACTATTGAAAACAATGTTATATGACATACAAGCAAAATGTAACAACAACGGCTTAAGTAACATATAACTTTTCGAGTAGGGAGAATTTGACAACTAGTTGCATCCTTCTATAGTACAATTTGAGACGATTCAGGTCTGGTAGACCTAGACGTGATTTTTCCGAACGGTCATACAAAATTAGGGGAAGAGTTGACAACTAGTCACACCCCTTATAGTACATTATGGGGCATTTCATGTCTACCAGGGGTAGACATGATTCTGCCGAAACGTCATATACTAAGAAAAAACAAGAAGGAAATTATAAATCATGAAAGCAGTAAAGGAAAGCGATAAAGTGATACAAGGCAAGAGTTTTGACATGTAACAGACATGCAGCTATGGACAACACACCTTAGACAACCATGACCGTGACCTGCCTAAGGCATGACAATCCCTGGTCTCCCATCTCTCTTCGTGCTTGTGGTGGATACTCTTAACGGGATTGTCGGTCCTGTTGTTTTCTGCTCCGACAAGGAAGAATCGTTCCTCATTTGAACCATATCTTAGTTTTCTTCTAAACATTGTTGGGGCTTAAAATTAATAAGGGAAAATGCCAAATTATGGGTCTAAAATGTGACCTAGGTAAGGTGGGAAGGTGGGTTGTGACATTGAGTCTTTCTTCTCATCCTACCTAGGTCTCCCTCTCGGCCATAATCTGAAATCTCTACCCTTTTGGAGTCCTGTTATTGAGTGAGTAAAAGATTTGCTAATTGTAAGAGAAGCTTCTTTCTCTATGGGTGGAAGAGTGACCCACATTAGCTCACATTAGCTCTGTAATAGTCCAAGCTCACTGCTAGCCGATATTGTCCTCTCTGGGCTTTCCCTTTCAGACTTCCCCTCAAGTGTTTTAAAACGCGTCTGCTAGGGAGAGATTTCCACACTCTTATAAAGAATACTTTGTTCTCCTCCCCAACCGATGTGGGATCTCACAAGCTCGATCTTGAATAGAATTCTTATTTATTTATTTTCCCTTTTGGTTCGATTTGTAATACGTTCGAGAAGCTCACGAATGATTTTTTTTTTTTTTTTTTGTGGGAAGAGGTTGATGAAGGCAAAATGTGCGCTCGGTGAGTTGGCATACGTTGGGAAAGTAATTGAATGTGAGATTCATATCGATTGGAGAGGGAAACAAAGCATTTTTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGCATTTCAAAACCGTGAGGCTGATGGCAATACGTAACGGACCAAAATGGACAATATCTGCTAGCAATGGGATTGGACTATTCCAATAAATCTTGGGGCATAGAGTTGGGGGGATTTAAGGGCTCAGAACAAACCTTTTTTGGCTCAATGGCTTTGGCACCTACGCCTTGAGTCTGCTACTCTTTCTTGGTCCCATGCTTTGTGGGTGATGTGAGGGATGTTTATTTTAGACCATGAGAGGCTTATGTTCCTAAGAAAACATATTGAGGCTTAAGCCTCCACCTTAATTAGAAGAATAGTATGAATTTGCCGTGTGATTTTGTTTTCACTTTTATGTAATTATTATTTTTTTCAATAACGATCACACTAATTTAGGATTTGTATAATGTTCTTAATAAAAGACGAGGCTTAACGCCTCAAGGCTTCCGCCCCGCCTCTTCAAGAGGAAAAAACTTGAGGCCACTTTTAGCTTTTTTAAACATCGTCTTCGGCTAGTAAATAATGTCTTCTTTGGACTTTCTCCTCAAGGTTTTAAAACGCGTTTTCTAGGGAGAGGTTTCCACACCCTTATAATAAATGTTTTGTTCTCCTCTCCAACCAATGTGGGATCTCACAGTTCACCCTCTTGGGGGCCAGCGTCCTCGCTGGCACACTGCTTGGTGTCTGGCTCTGATACCATTTGTAACAACCCAAGCCTATCGCTAGTAAAGGTTGTCCTCTCTTTGTGCTTTCCCCTCAAGGTTTTAAAACGCATCTTCTAGAGAGAGGTTTCCACACAAATGCTTCGTTCTTAGCTCTTTTGGGCCTGAATTTCCTATCTTGGAACATCTTTTTATGCACGTCGCGTGCAGCCTTTGTATGAACCTAAAGACTCTTTGTTTTAATCAAAACTCACAGCTCTCTTTGCAACTACTATATGGTTTTAACTCTCTCTATATTACATTGTAGTGAGATCACTGCTGAGGGGAGACGGATAACAAAGTTGGATCAGATTCTACTCAATGGGAACAACATTGCTATTGTAAGTGACAATTACTGGTTTTAATGTTTACATGCCCTTGTTTTGGAAAGCTACTAATTTGTGGACGAGTTCCTAAACCAATGAACAATGGTTGTGTAAGGGCCTAGCTTCATGATGGCCATGGGTGACCCTCCAATCCTCGCCTTAATAATGATAGCGAGTTAATGAAGGGAACCATATTTGTTCGTCCTAACGTTTATATAGTCGAGTCATATTCATATGCCTTCTATATTAAGGAAGTTGTTGTTTTGTGAGATTAGTTGACACGTGATAAGTTGGCATGAGTCGATATTCATATTAACTCATCTTGACATACTCGGGATATATATTGTAGAGTCAAGTAGTTGTCCATAATACTCGGGCTAAGTTGGTCTAGTTGTCTTTTGAGCATTAGTCAACGTGCATGTAAGCGCTTCTATGCAAACGAGCAGTTCTTATTGCTGTATGATTGTTGAAACATCTGTTGTTTGTATGCAGCTCGTTCCCAGTGGATCGCCAGACGCAGAATAGGTGTGGAATATGAATAGCATATTGTTTTGGTTGACAAACTTTGCACCATTGTTATGAGTTGTGCCTCCCAACTCCCAACATTTAGTTTTCTTTCAATGTAGAACGACGCAGGTGACAACTTTCATGTATTTGATTCCTTCATCTTCATTGCTTCCTATACAAATCTATTGGCTCAATTCTAAGTGCATTTGATTGTGTTTAAATACAGTGGTAATGTGCTGAAGTAAATACTTATGTAGATTTTTAAAACATGGTTAGAGATTGAACCTTTGCTCTTTACTT

mRNA sequence

TTTCGCTCGATGGCTCGTCGAAGGGAATAAGAAATCGCGCCTCTTCGCACTTCACTGACACTTGCGGCTTCAACTCGCAGTCTTTCTGAAAAACCTTTAATCCATGGCTAACAATCCTTCGCAGCTACTGCCCTCAGAGTTAATCGACCGATGTATAGGGTCTAAAATATGGGTCATTATGAAGGGCGACAAAGAGCTTGTTGGCACTCTTAAAGGATTTGATGTTTATGTCAACATGGTTCTTGAAGATGTTACTGAATATGAGATCACTGCTGAGGGGAGACGGATAACAAAGTTGGATCAGATTCTACTCAATGGGAACAACATTGCTATTCTCGTTCCCAGTGGATCGCCAGACGCAGAATAGGTGTGGAATATGAATAGCATATTGTTTTGGTTGACAAACTTTGCACCATTGTTATGAGTTGTGCCTCCCAACTCCCAACATTTAGTTTTCTTTCAATGTAGAACGACGCAGGTGACAACTTTCATGTATTTGATTCCTTCATCTTCATTGCTTCCTATACAAATCTATTGGCTCAATTCTAAGTGCATTTGATTGTGTTTAAATACAGTGGTAATGTGCTGAAGTAAATACTTATGTAGATTTTTAAAACATGGTTAGAGATTGAACCTTTGCTCTTTACTT

Coding sequence (CDS)

ATGGCTAACAATCCTTCGCAGCTACTGCCCTCAGAGTTAATCGACCGATGTATAGGGTCTAAAATATGGGTCATTATGAAGGGCGACAAAGAGCTTGTTGGCACTCTTAAAGGATTTGATGTTTATGTCAACATGGTTCTTGAAGATGTTACTGAATATGAGATCACTGCTGAGGGGAGACGGATAACAAAGTTGGATCAGATTCTACTCAATGGGAACAACATTGCTATTCTCGTTCCCAGTGGATCGCCAGACGCAGAATAG

Protein sequence

MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPSGSPDAE
Homology
[Close]
BLAST of CmaCh19G001430 vs. Swiss-Prot
Match: LSM5_ARATH (Sm-like protein LSM5 OS=Arabidopsis thaliana GN=LSM5 PE=1 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 4.8e-41
Identity = 81/85 (95.29%), Postives = 83/85 (97.65%), Query Frame = 1 

Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVG LKGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAILVPSGSPD 86
          R+TKLDQILLNGNNIAILVP GSP+
Sbjct: 61 RVTKLDQILLNGNNIAILVPGGSPE 85

[Close]
BLAST of CmaCh19G001430 vs. Swiss-Prot
Match: LSM5_PONAB (U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii GN=LSM5 PE=3 SV=3)

HSP 1 Score: 132.5 bits (332), Expect = 2.2e-30
Identity = 62/79 (78.48%), Postives = 71/79 (89.87%), Query Frame = 1 

Query: 4  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
          NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8  NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67

Query: 64 KLDQILLNGNNIAILVPSG 83
          KLDQILLNGNNI +LVP G
Sbjct: 68 KLDQILLNGNNITMLVPGG 86

[Close]
BLAST of CmaCh19G001430 vs. Swiss-Prot
Match: LSM5_MOUSE (U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus GN=Lsm5 PE=3 SV=2)

HSP 1 Score: 132.5 bits (332), Expect = 2.2e-30
Identity = 62/79 (78.48%), Postives = 71/79 (89.87%), Query Frame = 1 

Query: 4  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
          NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8  NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67

Query: 64 KLDQILLNGNNIAILVPSG 83
          KLDQILLNGNNI +LVP G
Sbjct: 68 KLDQILLNGNNITMLVPGG 86

[Close]
BLAST of CmaCh19G001430 vs. Swiss-Prot
Match: LSM5_HUMAN (U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens GN=LSM5 PE=1 SV=3)

HSP 1 Score: 132.5 bits (332), Expect = 2.2e-30
Identity = 62/79 (78.48%), Postives = 71/79 (89.87%), Query Frame = 1 

Query: 4  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
          NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8  NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67

Query: 64 KLDQILLNGNNIAILVPSG 83
          KLDQILLNGNNI +LVP G
Sbjct: 68 KLDQILLNGNNITMLVPGG 86

[Close]
BLAST of CmaCh19G001430 vs. Swiss-Prot
Match: LSM5_BOVIN (U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus GN=LSM5 PE=3 SV=3)

HSP 1 Score: 132.5 bits (332), Expect = 2.2e-30
Identity = 62/79 (78.48%), Postives = 71/79 (89.87%), Query Frame = 1 

Query: 4  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
          NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8  NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67

Query: 64 KLDQILLNGNNIAILVPSG 83
          KLDQILLNGNNI +LVP G
Sbjct: 68 KLDQILLNGNNITMLVPGG 86

[Close]
BLAST of CmaCh19G001430 vs. TrEMBL
Match: A0A067K2G7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17623 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.7e-40
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 1 

Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTL+GFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAILVPSGSPDAE 88
          RITKLDQILLNGNNIAILVP GSPD E
Sbjct: 61 RITKLDQILLNGNNIAILVPGGSPDPE 87

[Close]
BLAST of CmaCh19G001430 vs. TrEMBL
Match: A0A0B0NQ45_GOSAR (U6 snRNA-associated Sm-like protein LSm5 OS=Gossypium arboreum GN=F383_03135 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.7e-40
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 1 

Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTL+GFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAILVPSGSPDAE 88
          RITKLDQILLNGNNIAILVP GSPD E
Sbjct: 61 RITKLDQILLNGNNIAILVPGGSPDPE 87

[Close]
BLAST of CmaCh19G001430 vs. TrEMBL
Match: I3SAC1_MEDTR (U6 snRNA-associated-like-Smprotein OS=Medicago truncatula GN=MTR_4g094600 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.7e-40
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 1 

Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTL+GFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAILVPSGSPDAE 88
          RITKLDQILLNGNNIAILVP GSPD E
Sbjct: 61 RITKLDQILLNGNNIAILVPGGSPDPE 87

[Close]
BLAST of CmaCh19G001430 vs. TrEMBL
Match: A0A061DMN8_THECC (Small nuclear ribonucleoprotein family protein OS=Theobroma cacao GN=TCM_003004 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.7e-40
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 1 

Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTL+GFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAILVPSGSPDAE 88
          RITKLDQILLNGNNIAILVP GSPD E
Sbjct: 61 RITKLDQILLNGNNIAILVPGGSPDPE 87

[Close]
BLAST of CmaCh19G001430 vs. TrEMBL
Match: I3NML9_HEVBR (U6 snRNA-associated Sm-like protein LSm5 OS=Hevea brasiliensis GN=LSm5 PE=2 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.2e-40
Identity = 83/87 (95.40%), Postives = 85/87 (97.70%), Query Frame = 1 

Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTL+GFDVYVNMVLEDVTEYE+TAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEVTAEGR 60

Query: 61 RITKLDQILLNGNNIAILVPSGSPDAE 88
          RITKLDQILLNGNNIAILVP GSPD E
Sbjct: 61 RITKLDQILLNGNNIAILVPGGSPDPE 87

[Close]
BLAST of CmaCh19G001430 vs. TAIR10
Match: AT5G48870.1 (AT5G48870.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 167.9 bits (424), Expect = 2.7e-42
Identity = 81/85 (95.29%), Postives = 83/85 (97.65%), Query Frame = 1 

Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVG LKGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAILVPSGSPD 86
          R+TKLDQILLNGNNIAILVP GSP+
Sbjct: 61 RVTKLDQILLNGNNIAILVPGGSPE 85

[Close]
BLAST of CmaCh19G001430 vs. NCBI nr
Match: gi|727622629|ref|XP_010482156.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Camelina sativa])

HSP 1 Score: 173.3 bits (438), Expect = 1.8e-40
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 1 

Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAILVPSGSPDAE 88
          R+TKLDQILLNGNNIAILVP GSPD E
Sbjct: 61 RVTKLDQILLNGNNIAILVPGGSPDDE 87

[Close]
BLAST of CmaCh19G001430 vs. NCBI nr
Match: gi|502141920|ref|XP_004504703.1| (PREDICTED: sm-like protein LSM5 [Cicer arietinum])

HSP 1 Score: 172.9 bits (437), Expect = 2.4e-40
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 1 

Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTL+GFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAILVPSGSPDAE 88
          RITKLDQILLNGNNIAILVP GSPD E
Sbjct: 61 RITKLDQILLNGNNIAILVPGGSPDPE 87

[Close]
BLAST of CmaCh19G001430 vs. NCBI nr
Match: gi|313586491|gb|ADR71256.1| (U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis])

HSP 1 Score: 172.6 bits (436), Expect = 3.1e-40
Identity = 83/87 (95.40%), Postives = 85/87 (97.70%), Query Frame = 1 

Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
          MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTL+GFDVYVNMVLEDVTEYE+TAEGR
Sbjct: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEVTAEGR 60

Query: 61 RITKLDQILLNGNNIAILVPSGSPDAE 88
          RITKLDQILLNGNNIAILVP GSPD E
Sbjct: 61 RITKLDQILLNGNNIAILVPGGSPDPE 87

[Close]
BLAST of CmaCh19G001430 vs. NCBI nr
Match: gi|568853094|ref|XP_006480202.1| (PREDICTED: sm-like protein LSM5 [Citrus sinensis])

HSP 1 Score: 172.2 bits (435), Expect = 4.1e-40
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 1 

Query: 1  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
          MA+NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1  MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60

Query: 61 RITKLDQILLNGNNIAILVPSGSPDAE 88
          RITKLDQILLNGNNIAILVP GSPD E
Sbjct: 61 RITKLDQILLNGNNIAILVPGGSPDPE 87

[Close]
BLAST of CmaCh19G001430 vs. NCBI nr
Match: gi|1009149161|ref|XP_015892332.1| (PREDICTED: sm-like protein LSM5 [Ziziphus jujuba])

HSP 1 Score: 172.2 bits (435), Expect = 4.1e-40
Identity = 83/87 (95.40%), Postives = 86/87 (98.85%), Query Frame = 1 

Query: 1   MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
           MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTL+GFDVYVNMVLEDVTEYEITAEGR
Sbjct: 79  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 138

Query: 61  RITKLDQILLNGNNIAILVPSGSPDAE 88
           RITKLDQILLNGNNIAILVP GSP++E
Sbjct: 139 RITKLDQILLNGNNIAILVPGGSPESE 165

The following BLAST results are available for this feature:
BLAST of CmaCh19G001430 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LSM5_ARATH4.8e-4195.29Sm-like protein LSM5 OS=Arabidopsis thaliana GN=LSM5 PE=1 SV=1[more]
LSM5_PONAB2.2e-3078.48U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii GN=LSM5 PE=3 SV=3[more]
LSM5_MOUSE2.2e-3078.48U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus GN=Lsm5 PE=3 SV=2[more]
LSM5_HUMAN2.2e-3078.48U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens GN=LSM5 PE=1 SV=3[more]
LSM5_BOVIN2.2e-3078.48U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus GN=LSM5 PE=3 SV=3[more]
BLAST of CmaCh19G001430 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A067K2G7_JATCU1.7e-4096.55Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17623 PE=4 SV=1[more]
A0A0B0NQ45_GOSAR1.7e-4096.55U6 snRNA-associated Sm-like protein LSm5 OS=Gossypium arboreum GN=F383_03135 PE=... [more]
I3SAC1_MEDTR1.7e-4096.55U6 snRNA-associated-like-Smprotein OS=Medicago truncatula GN=MTR_4g094600 PE=2 S... [more]
A0A061DMN8_THECC1.7e-4096.55Small nuclear ribonucleoprotein family protein OS=Theobroma cacao GN=TCM_003004 ... [more]
I3NML9_HEVBR2.2e-4095.40U6 snRNA-associated Sm-like protein LSm5 OS=Hevea brasiliensis GN=LSm5 PE=2 SV=1[more]
BLAST of CmaCh19G001430 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G48870.12.7e-4295.29 Small nuclear ribonucleoprotein family protein[more]
BLAST of CmaCh19G001430 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|727622629|ref|XP_010482156.1|1.8e-4096.55PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Camelina sativa][more]
gi|502141920|ref|XP_004504703.1|2.4e-4096.55PREDICTED: sm-like protein LSM5 [Cicer arietinum][more]
gi|313586491|gb|ADR71256.1|3.1e-4095.40U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis][more]
gi|568853094|ref|XP_006480202.1|4.1e-4096.55PREDICTED: sm-like protein LSM5 [Citrus sinensis][more]
gi|1009149161|ref|XP_015892332.1|4.1e-4095.40PREDICTED: sm-like protein LSM5 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009737 response to abscisic acid
biological_process GO:0009414 response to water deprivation
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0000956 nuclear-transcribed mRNA catabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:1990726 Lsm1-7-Pat1 complex
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
cellular_component GO:0005688 U6 snRNP
cellular_component GO:0005575 cellular_component
molecular_function GO:0003723 RNA binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G001430.1CmaCh19G001430.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 13..80
score: 8.8
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 12..80
score: 6.8
IPR010920LSM domainunknownSSF50182Sm-like ribonucleoproteinscoord: 8..81
score: 2.52
NoneNo IPR availableGENE3DG3DSA:2.30.30.100coord: 8..81
score: 9.9
NoneNo IPR availablePANTHERPTHR20971U6 SNRNA-ASSOCIATED PROTEINcoord: 1..84
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh19G001430Cucsa.140280Cucumber (Gy14) v1cgycmaB0392
CmaCh19G001430Cla002732Watermelon (97103) v1cmawmB492
CmaCh19G001430Csa3G625090Cucumber (Chinese Long) v2cmacuB509
CmaCh19G001430MELO3C018062Melon (DHL92) v3.5.1cmameB471
CmaCh19G001430ClCG07G001790Watermelon (Charleston Gray)cmawcgB467
CmaCh19G001430CSPI03G27310Wild cucumber (PI 183967)cmacpiB516
CmaCh19G001430CmoCh02G017370Cucurbita moschata (Rifu)cmacmoB523
CmaCh19G001430CmoCh19G001600Cucurbita moschata (Rifu)cmacmoB508
CmaCh19G001430Lsi05G011040Bottle gourd (USVL1VR-Ls)cmalsiB486
CmaCh19G001430Cp4.1LG15g01350Cucurbita pepo (Zucchini)cmacpeB522
CmaCh19G001430Cp4.1LG05g00720Cucurbita pepo (Zucchini)cmacpeB543
CmaCh19G001430MELO3C018062.2Melon (DHL92) v3.6.1cmamedB545
CmaCh19G001430CsaV3_3G028790Cucumber (Chinese Long) v3cmacucB0614
CmaCh19G001430Cla97C07G130050Watermelon (97103) v2cmawmbB540
CmaCh19G001430Bhi05G000073Wax gourdcmawgoB0653
CmaCh19G001430CsGy3G025440Cucumber (Gy14) v2cgybcmaB375
CmaCh19G001430Carg08913Silver-seed gourdcarcmaB1082
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh19G001430CmaCh02G016940Cucurbita maxima (Rimu)cmacmaB450
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh19G001430Cucurbita pepo (Zucchini)cmacpeB519
CmaCh19G001430Cucurbita pepo (Zucchini)cmacpeB529
CmaCh19G001430Cucurbita pepo (Zucchini)cmacpeB554
CmaCh19G001430Bottle gourd (USVL1VR-Ls)cmalsiB465
CmaCh19G001430Bottle gourd (USVL1VR-Ls)cmalsiB480
CmaCh19G001430Bottle gourd (USVL1VR-Ls)cmalsiB487
CmaCh19G001430Cucumber (Gy14) v2cgybcmaB384
CmaCh19G001430Cucumber (Gy14) v2cgybcmaB948
CmaCh19G001430Melon (DHL92) v3.6.1cmamedB559
CmaCh19G001430Silver-seed gourdcarcmaB0092
CmaCh19G001430Silver-seed gourdcarcmaB0327
CmaCh19G001430Silver-seed gourdcarcmaB1322
CmaCh19G001430Cucumber (Chinese Long) v3cmacucB0624
CmaCh19G001430Watermelon (97103) v2cmawmbB537
CmaCh19G001430Watermelon (97103) v2cmawmbB539
CmaCh19G001430Wax gourdcmawgoB0637
CmaCh19G001430Cucurbita maxima (Rimu)cmacmaB259
CmaCh19G001430Cucurbita maxima (Rimu)cmacmaB362
CmaCh19G001430Cucurbita maxima (Rimu)cmacmaB460
CmaCh19G001430Cucurbita maxima (Rimu)cmacmaB466
CmaCh19G001430Cucumber (Gy14) v1cgycmaB0140
CmaCh19G001430Cucumber (Gy14) v1cgycmaB0717
CmaCh19G001430Cucurbita moschata (Rifu)cmacmoB501
CmaCh19G001430Cucurbita moschata (Rifu)cmacmoB505
CmaCh19G001430Wild cucumber (PI 183967)cmacpiB524
CmaCh19G001430Cucumber (Chinese Long) v2cmacuB531
CmaCh19G001430Watermelon (Charleston Gray)cmawcgB451
CmaCh19G001430Watermelon (Charleston Gray)cmawcgB464
CmaCh19G001430Watermelon (97103) v1cmawmB495