CmoCh02G017370 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G017370
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	U6 snRNA-associated Sm-like protein LSm5
Location	Cmo_Chr02 : 9894589 .. 9897242 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAACAATCCTTCGCAGCTACTGCCCTCAGGTTCGCTTTCTGCTTCTTCTTCGATTTTTTTTTGCTCATTTTCCCCTCCTATTTCGATTGAATTGGACTCTAATTTACTTGGTTTATGGTGAGAATTTGCAGAGTTGATCGATCGATGTATAGGGTCGAAAATATGGGTCATTATGAAAGGCGACAAGGAACTCGTCGGTACTCTCAGAGGATTCGATGTTTATGTCAACATGGTTCTTGAAGATGTTACTGAATAGTAAGGGCTTTTATGAGATCTAAACTCACATTTCTTTGGTTTGCTCATTGTATTTCGCATAATTTGTTGTGTTTGAGTCTGTTCTGTTTGTTCTCTTTCTCTTATGAAGTGTTTGATGTGTTGATTTTAGTGTGGGGGAATATGAGGCAAGTAGAGGAAAGTATTTGGCTCAAGGTCGTATTTGTCTGTGTTTAAGGGATTGAAACGTGATTGAAAGTGACAGAATGTTGCGCTAGAGCAATTTGAGTTATTGAGCATGTGATTTTCATTGAATGATGGAGAGCTTTTGAGTTAAGGTTTAGAAATTCCCTTATTCAAACACTGGAGGTTTCTTTAGAAGTTAAAGGAAAGTGATCCATAATCTCATGCCATACTGAAATAGAAGGAAAAGAGTTAACAGGAGAGGGGGATAACCTTAGCCATGTTCATTTCCTGCCAAGATTCCGTTGATGGAAGTGTTTCTTTTCATGGAGGTAAGGTAAAGTAGAGAACCAAAATCTCTCGTAAAGTAGAAGGAAAAAGTTGGCTCAAGTGTCGAGCAGTACTCTGCCTAGGTTGATACACATTGTTTCTTTTTCCACGCCTGATTCTAAGCAAATTGGGGATCAGTAATCGTGTTCCCTATCACTGTACAATTTTACTACCTTCTTCTATGTTGGGGATAGGAAAAATTAGCAAACAGATTTAAGCGGGATACATGATTGTTATTGTTCTATTCTTTCCCTTTTGGAGCTGTAAAGCTAGCAGATTATTGCTAACTTTTCTCTTCCGGGGTCCGGTTGTGGATATATAACCCGATTGGGAAGCTCATAGTTGAGCATCAAGTTCTGAATGTGATGATCAAGATGTTTTAATTAACTCATCATTGGAAAGCTCATGATGTTTTTCTTATTAAATATATGAAAATTGACTTGAATTCTCAATGGTTACTAACAAAAGGAGTAACGATTTGGTAAGAACACAAGGAGTTGTTAAATTGTTAATTTGTCTTTGCTTATGTTCTTAGAGCGACCCCTTCTAGTTTACTGACCATTCAAGCTTTTCATAGAACTTGTTTCAGCTTATTCTGATGTTTCCAGTACTGGGTTAATATGGATATTGAAGTGGTCATAAGTTCGTAATCTTCTTTCGTTCAAAAATGGGTGGCTCCATAAAGCCTACATCTAGATTATAATTAACCAATAAACGATCCATTCAACAAGAGTACTTGTTGTTGGAGCTAATATCACCATTGCTGATTTTCTTTCCTGTTCTACCAATCAAAATCTAGGGTGCGCTCCATTGGGCCTAAAATTTCTATCTTGGCACGTCTTTTATGCTTGTGGCATGTACGAGTTGCTGTCTTTTTTATGAACCTAATGACTCTTTGTTTTAATGAAGACTCATAGCGCTCTCTAGAATCTACTATATGGTTTCACTCTCTCTGTATTACATTGTAGTGAAATCACTGCCGAGGGGAGACGGATAACAAAGCTGGATCAGATTCTACTCAATGGGAACAACATTGCTATTGTAAGTGACAATCACAGTTTTATTATTTTCATGCACTTGTTTGGGGAAGCCACAAGTCTTTAGACGATCTCCTCCTAGACCAATGAACAATGATTGTGTAAGAGGCCAAGCTTCATGATGGTTGTGGGTGTGCCCCAATCCCCATCTTTATAATGATAATAATAGTAATTTAAAGGAACCGTCATTGTTCGTCCCAATGGTTAAATAGTCAAGTCTTAAATTCACGTGCCTCTTATGTCATTCATATTAGTAGTTGTTTCGTAAGATCAGTCAATGTGTGAGCAAGTTGACGTGGACGTTATTTGAAATTAGCCAACATGCACGTGAACTCATATAGACAAAGCAGAGGGAAAAAAACAAATAGAGAACTCAGAGTTGTAGTTGCCCTTTTAAGATTAGTCAATGTGATTGTTAGCAGCTCATCTAGACGAACTAGAAGTTCTTATTAACGTCTGATTGTTGAAGCAAATTGTTTATTTGCAGCTCGTCCCCGGTGGATCACCTGACCCAGAATAAGTGCAGAATATGAATAGCATGTTGTTCTGGTGGGGAAACCTTGCACGATTTTCATGGTTGGCTCCCAGCACCAAACATTTACTTTTCTATGGACGTAGAAAGACTCAGGTGACATCTTTCATGTATTTGATTGAAGTAAAGCGTCATAGTTTCGTGTTTCGTCGATGTGAATCTAGCTTTCTTCATATTCACTGCTTCGGCTGGAAATCTTTTGGCTTAATTCTGAATTTGACTGCTTTCAATGGGTTCACAAATTTTTTTAAAAGCTAGAGCTGTAATACCCTGAAGTAAAACACTTCTCCTGATTTTAAAACAATGAAGGAGATCGAATCAAATCGATAATCGAGCCAAGTCATACAAAGGAAG

mRNA sequence

ATGGCCAACAATCCTTCGCAGCTACTGCCCTCAGGTTCGCTTTCTGCTTCTTCTTCGATTTTTTTTTGCTCATTTTCCCCTCCTATTTCGATTGAATTGGACTCTAATTTACTTGAGTTGATCGATCGATGTATAGGGTCGAAAATATGGGTCATTATGAAAGGCGACAAGGAACTCGTCGGTACTCTCAGAGGATTCGATGTTTATGTCAACATGGTTCTTGAAGATGTTACTGAATATGAAATCACTGCCGAGGGGAGACGGATAACAAAGCTGGATCAGATTCTACTCAATGGGAACAACATTGCTATTCTCGTCCCCGGTGGATCACCTGACCCAGAATAAGTGCAGAATATGAATAGCATGTTGTTCTGGTGGGGAAACCTTGCACGATTTTCATGGTTGGCTCCCAGCACCAAACATTTACTTTTCTATGGACGTAGAAAGACTCAGGTGACATCTTTCATGTATTTGATTGAAGTAAAGCGTCATAGTTTCGTGTTTCGTCGATGTGAATCTAGCTTTCTTCATATTCACTGCTTCGGCTGGAAATCTTTTGGCTTAATTCTGAATTTGACTGCTTTCAATGGGTTCACAAATTTTTTTAAAAGCTAGAGCTGTAATACCCTGAAGTAAAACACTTCTCCTGATTTTAAAACAATGAAGGAGATCGAATCAAATCGATAATCGAGCCAAGTCATACAAAGGAAG

Coding sequence (CDS)

ATGGCCAACAATCCTTCGCAGCTACTGCCCTCAGGTTCGCTTTCTGCTTCTTCTTCGATTTTTTTTTGCTCATTTTCCCCTCCTATTTCGATTGAATTGGACTCTAATTTACTTGAGTTGATCGATCGATGTATAGGGTCGAAAATATGGGTCATTATGAAAGGCGACAAGGAACTCGTCGGTACTCTCAGAGGATTCGATGTTTATGTCAACATGGTTCTTGAAGATGTTACTGAATATGAAATCACTGCCGAGGGGAGACGGATAACAAAGCTGGATCAGATTCTACTCAATGGGAACAACATTGCTATTCTCGTCCCCGGTGGATCACCTGACCCAGAATAA

Homology

[Close]

BLAST of CmoCh02G017370 vs. Swiss-Prot
Match: LSM5_ARATH (Sm-like protein LSM5 OS=Arabidopsis thaliana GN=LSM5 PE=1 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.2e-36
Identity = 81/112 (72.32%), Postives = 84/112 (75.00%), Query Frame = 1


Query: 1   MANNPSQLLPSGSLSASSSIFFCSFSPPISIELDSNLLELIDRCIGSKIWVIMKGDKELV 60
           MANNPSQLLPS                           ELIDRCIGSKIWVIMKGDKELV
Sbjct: 1   MANNPSQLLPS---------------------------ELIDRCIGSKIWVIMKGDKELV 60

Query: 61  GTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPD 113
           G L+GFDVYVNMVLEDVTEYEITAEGRR+TKLDQILLNGNNIAILVPGGSP+
Sbjct: 61  GILKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPE 85

[Close]

BLAST of CmoCh02G017370 vs. Swiss-Prot
Match: LSM5_PONAB (U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii GN=LSM5 PE=3 SV=3)

HSP 1 Score: 122.9 bits (307), Expect = 2.3e-27
Identity = 57/72 (79.17%), Postives = 66/72 (91.67%), Query Frame = 1


Query: 38  LELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILL 97
           LEL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILL
Sbjct: 15  LELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILL 74

Query: 98  NGNNIAILVPGG 110
           NGNNI +LVPGG
Sbjct: 75  NGNNITMLVPGG 86

[Close]

BLAST of CmoCh02G017370 vs. Swiss-Prot
Match: LSM5_MOUSE (U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus GN=Lsm5 PE=3 SV=2)

HSP 1 Score: 122.9 bits (307), Expect = 2.3e-27
Identity = 57/72 (79.17%), Postives = 66/72 (91.67%), Query Frame = 1


Query: 38  LELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILL 97
           LEL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILL
Sbjct: 15  LELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILL 74

Query: 98  NGNNIAILVPGG 110
           NGNNI +LVPGG
Sbjct: 75  NGNNITMLVPGG 86

[Close]

BLAST of CmoCh02G017370 vs. Swiss-Prot
Match: LSM5_HUMAN (U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens GN=LSM5 PE=1 SV=3)

HSP 1 Score: 122.9 bits (307), Expect = 2.3e-27
Identity = 57/72 (79.17%), Postives = 66/72 (91.67%), Query Frame = 1


Query: 38  LELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILL 97
           LEL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILL
Sbjct: 15  LELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILL 74

Query: 98  NGNNIAILVPGG 110
           NGNNI +LVPGG
Sbjct: 75  NGNNITMLVPGG 86

[Close]

BLAST of CmoCh02G017370 vs. Swiss-Prot
Match: LSM5_BOVIN (U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus GN=LSM5 PE=3 SV=3)

HSP 1 Score: 122.9 bits (307), Expect = 2.3e-27
Identity = 57/72 (79.17%), Postives = 66/72 (91.67%), Query Frame = 1


Query: 38  LELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILL 97
           LEL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILL
Sbjct: 15  LELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILL 74

Query: 98  NGNNIAILVPGG 110
           NGNNI +LVPGG
Sbjct: 75  NGNNITMLVPGG 86

[Close]

BLAST of CmoCh02G017370 vs. TrEMBL
Match: A0A0B0NQ45_GOSAR (U6 snRNA-associated Sm-like protein LSm5 OS=Gossypium arboreum GN=F383_03135 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.3e-37
Identity = 87/114 (76.32%), Postives = 87/114 (76.32%), Query Frame = 1


Query: 1   MANNPSQLLPSGSLSASSSIFFCSFSPPISIELDSNLLELIDRCIGSKIWVIMKGDKELV 60
           MANNPSQLLPS                           ELIDRCIGSKIWVIMKGDKELV
Sbjct: 1   MANNPSQLLPS---------------------------ELIDRCIGSKIWVIMKGDKELV 60

Query: 61  GTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE 115
           GTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 61  GTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE 87

[Close]

BLAST of CmoCh02G017370 vs. TrEMBL
Match: A0A061DMN8_THECC (Small nuclear ribonucleoprotein family protein OS=Theobroma cacao GN=TCM_003004 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.3e-37
Identity = 87/114 (76.32%), Postives = 87/114 (76.32%), Query Frame = 1


Query: 1   MANNPSQLLPSGSLSASSSIFFCSFSPPISIELDSNLLELIDRCIGSKIWVIMKGDKELV 60
           MANNPSQLLPS                           ELIDRCIGSKIWVIMKGDKELV
Sbjct: 1   MANNPSQLLPS---------------------------ELIDRCIGSKIWVIMKGDKELV 60

Query: 61  GTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE 115
           GTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 61  GTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE 87

[Close]

BLAST of CmoCh02G017370 vs. TrEMBL
Match: I3SAC1_MEDTR (U6 snRNA-associated-like-Smprotein OS=Medicago truncatula GN=MTR_4g094600 PE=2 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.3e-37
Identity = 87/114 (76.32%), Postives = 87/114 (76.32%), Query Frame = 1


Query: 1   MANNPSQLLPSGSLSASSSIFFCSFSPPISIELDSNLLELIDRCIGSKIWVIMKGDKELV 60
           MANNPSQLLPS                           ELIDRCIGSKIWVIMKGDKELV
Sbjct: 1   MANNPSQLLPS---------------------------ELIDRCIGSKIWVIMKGDKELV 60

Query: 61  GTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE 115
           GTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 61  GTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE 87

[Close]

BLAST of CmoCh02G017370 vs. TrEMBL
Match: A0A067K2G7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17623 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.3e-37
Identity = 87/114 (76.32%), Postives = 87/114 (76.32%), Query Frame = 1


Query: 1   MANNPSQLLPSGSLSASSSIFFCSFSPPISIELDSNLLELIDRCIGSKIWVIMKGDKELV 60
           MANNPSQLLPS                           ELIDRCIGSKIWVIMKGDKELV
Sbjct: 1   MANNPSQLLPS---------------------------ELIDRCIGSKIWVIMKGDKELV 60

Query: 61  GTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE 115
           GTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 61  GTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE 87

[Close]

BLAST of CmoCh02G017370 vs. TrEMBL
Match: I3NML9_HEVBR (U6 snRNA-associated Sm-like protein LSm5 OS=Hevea brasiliensis GN=LSm5 PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.7e-37
Identity = 86/114 (75.44%), Postives = 87/114 (76.32%), Query Frame = 1


Query: 1   MANNPSQLLPSGSLSASSSIFFCSFSPPISIELDSNLLELIDRCIGSKIWVIMKGDKELV 60
           MANNPSQLLPS                           ELIDRCIGSKIWVIMKGDKELV
Sbjct: 1   MANNPSQLLPS---------------------------ELIDRCIGSKIWVIMKGDKELV 60

Query: 61  GTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE 115
           GTLRGFDVYVNMVLEDVTEYE+TAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 61  GTLRGFDVYVNMVLEDVTEYEVTAEGRRITKLDQILLNGNNIAILVPGGSPDPE 87

[Close]

BLAST of CmoCh02G017370 vs. TAIR10
Match: AT5G48870.1 (AT5G48870.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 153.7 bits (387), Expect = 6.9e-38
Identity = 81/112 (72.32%), Postives = 84/112 (75.00%), Query Frame = 1


Query: 1   MANNPSQLLPSGSLSASSSIFFCSFSPPISIELDSNLLELIDRCIGSKIWVIMKGDKELV 60
           MANNPSQLLPS                           ELIDRCIGSKIWVIMKGDKELV
Sbjct: 1   MANNPSQLLPS---------------------------ELIDRCIGSKIWVIMKGDKELV 60

Query: 61  GTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPD 113
           G L+GFDVYVNMVLEDVTEYEITAEGRR+TKLDQILLNGNNIAILVPGGSP+
Sbjct: 61  GILKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPE 85

[Close]

BLAST of CmoCh02G017370 vs. NCBI nr
Match: gi|502141920|ref|XP_004504703.1| (PREDICTED: sm-like protein LSM5 [Cicer arietinum])

HSP 1 Score: 163.7 bits (413), Expect = 1.9e-37
Identity = 87/114 (76.32%), Postives = 87/114 (76.32%), Query Frame = 1


Query: 1   MANNPSQLLPSGSLSASSSIFFCSFSPPISIELDSNLLELIDRCIGSKIWVIMKGDKELV 60
           MANNPSQLLPS                           ELIDRCIGSKIWVIMKGDKELV
Sbjct: 1   MANNPSQLLPS---------------------------ELIDRCIGSKIWVIMKGDKELV 60

Query: 61  GTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE 115
           GTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 61  GTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE 87

[Close]

BLAST of CmoCh02G017370 vs. NCBI nr
Match: gi|313586491|gb|ADR71256.1| (U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis])

HSP 1 Score: 163.3 bits (412), Expect = 2.5e-37
Identity = 86/114 (75.44%), Postives = 87/114 (76.32%), Query Frame = 1


Query: 1   MANNPSQLLPSGSLSASSSIFFCSFSPPISIELDSNLLELIDRCIGSKIWVIMKGDKELV 60
           MANNPSQLLPS                           ELIDRCIGSKIWVIMKGDKELV
Sbjct: 1   MANNPSQLLPS---------------------------ELIDRCIGSKIWVIMKGDKELV 60

Query: 61  GTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE 115
           GTLRGFDVYVNMVLEDVTEYE+TAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 61  GTLRGFDVYVNMVLEDVTEYEVTAEGRRITKLDQILLNGNNIAILVPGGSPDPE 87

[Close]

BLAST of CmoCh02G017370 vs. NCBI nr
Match: gi|747066950|ref|XP_011080174.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Sesamum indicum])

HSP 1 Score: 162.5 bits (410), Expect = 4.2e-37
Identity = 86/114 (75.44%), Postives = 87/114 (76.32%), Query Frame = 1


Query: 1   MANNPSQLLPSGSLSASSSIFFCSFSPPISIELDSNLLELIDRCIGSKIWVIMKGDKELV 60
           MANNPSQLLPS                           ELIDRCIGSKIWVIMKGDKELV
Sbjct: 1   MANNPSQLLPS---------------------------ELIDRCIGSKIWVIMKGDKELV 60

Query: 61  GTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE 115
           GTLRGFDVYVNMVLEDVTEYEIT+EGRRITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 61  GTLRGFDVYVNMVLEDVTEYEITSEGRRITKLDQILLNGNNIAILVPGGSPDPE 87

[Close]

BLAST of CmoCh02G017370 vs. NCBI nr
Match: gi|823189334|ref|XP_012490799.1| (PREDICTED: sm-like protein LSM5 [Gossypium raimondii])

HSP 1 Score: 162.2 bits (409), Expect = 5.5e-37
Identity = 86/114 (75.44%), Postives = 86/114 (75.44%), Query Frame = 1


Query: 1   MANNPSQLLPSGSLSASSSIFFCSFSPPISIELDSNLLELIDRCIGSKIWVIMKGDKELV 60
           MANNPSQLLPS                           ELIDRCIGSKIWVIMKGDKELV
Sbjct: 1   MANNPSQLLPS---------------------------ELIDRCIGSKIWVIMKGDKELV 60

Query: 61  GTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE 115
           GTLRGFDVYVNMVLEDVTEYEIT EGRRITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 61  GTLRGFDVYVNMVLEDVTEYEITTEGRRITKLDQILLNGNNIAILVPGGSPDPE 87

[Close]

BLAST of CmoCh02G017370 vs. NCBI nr
Match: gi|388507376|gb|AFK41754.1| (unknown [Lotus japonicus])

HSP 1 Score: 161.8 bits (408), Expect = 7.2e-37
Identity = 86/114 (75.44%), Postives = 87/114 (76.32%), Query Frame = 1


Query: 1   MANNPSQLLPSGSLSASSSIFFCSFSPPISIELDSNLLELIDRCIGSKIWVIMKGDKELV 60
           MA+NPSQLLPS                           ELIDRCIGSKIWVIMKGDKELV
Sbjct: 1   MASNPSQLLPS---------------------------ELIDRCIGSKIWVIMKGDKELV 60

Query: 61  GTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE 115
           GTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 61  GTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE 87

The following BLAST results are available for this feature:

BLAST of CmoCh02G017370 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LSM5_ARATH	1.2e-36	72.32	Sm-like protein LSM5 OS=Arabidopsis thaliana GN=LSM5 PE=1 SV=1	[more]
LSM5_PONAB	2.3e-27	79.17	U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii GN=LSM5 PE=3 SV=3	[more]
LSM5_MOUSE	2.3e-27	79.17	U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus GN=Lsm5 PE=3 SV=2	[more]
LSM5_HUMAN	2.3e-27	79.17	U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens GN=LSM5 PE=1 SV=3	[more]
LSM5_BOVIN	2.3e-27	79.17	U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus GN=LSM5 PE=3 SV=3	[more]

BLAST of CmoCh02G017370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0B0NQ45_GOSAR	1.3e-37	76.32	U6 snRNA-associated Sm-like protein LSm5 OS=Gossypium arboreum GN=F383_03135 PE=...	[more]
A0A061DMN8_THECC	1.3e-37	76.32	Small nuclear ribonucleoprotein family protein OS=Theobroma cacao GN=TCM_003004 ...	[more]
I3SAC1_MEDTR	1.3e-37	76.32	U6 snRNA-associated-like-Smprotein OS=Medicago truncatula GN=MTR_4g094600 PE=2 S...	[more]
A0A067K2G7_JATCU	1.3e-37	76.32	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17623 PE=4 SV=1	[more]
I3NML9_HEVBR	1.7e-37	75.44	U6 snRNA-associated Sm-like protein LSm5 OS=Hevea brasiliensis GN=LSm5 PE=2 SV=1	[more]

BLAST of CmoCh02G017370 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G48870.1	6.9e-38	72.32	Small nuclear ribonucleoprotein family protein	[more]

BLAST of CmoCh02G017370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|502141920\|ref\|XP_004504703.1\|	1.9e-37	76.32	PREDICTED: sm-like protein LSM5 [Cicer arietinum]	[more]
gi\|313586491\|gb\|ADR71256.1\|	2.5e-37	75.44	U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis]	[more]
gi\|747066950\|ref\|XP_011080174.1\|	4.2e-37	75.44	PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Sesamum indicum]	[more]
gi\|823189334\|ref\|XP_012490799.1\|	5.5e-37	75.44	PREDICTED: sm-like protein LSM5 [Gossypium raimondii]	[more]
gi\|388507376\|gb\|AFK41754.1\|	7.2e-37	75.44	unknown [Lotus japonicus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001163	LSM_dom_euk/arc
IPR010920	LSM_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0009414	response to water deprivation
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:1990726	Lsm1-7-Pat1 complex
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005688	U6 snRNP
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G017370.1	CmoCh02G017370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 40..107 score: 3.0
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 39..107 score: 8.0
IPR010920	LSM domain	unknown	SSF50182	Sm-like ribonucleoproteins	coord: 37..109 score: 1.81
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 38..109 score: 7.4
None	No IPR available	PANTHER	PTHR20971	U6 SNRNA-ASSOCIATED PROTEIN	coord: 38..111 score: 7.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh02G017370	Cucsa.140280	Cucumber (Gy14) v1	cgycmoB0392
CmoCh02G017370	CmaCh19G001430	Cucurbita maxima (Rimu)	cmacmoB523
CmoCh02G017370	CmaCh02G016940	Cucurbita maxima (Rimu)	cmacmoB619
CmoCh02G017370	Cla002732	Watermelon (97103) v1	cmowmB552
CmoCh02G017370	Csa3G625090	Cucumber (Chinese Long) v2	cmocuB590
CmoCh02G017370	MELO3C018062	Melon (DHL92) v3.5.1	cmomeB557
CmoCh02G017370	ClCG07G001790	Watermelon (Charleston Gray)	cmowcgB566
CmoCh02G017370	CSPI03G27310	Wild cucumber (PI 183967)	cmocpiB595
CmoCh02G017370	Lsi05G011040	Bottle gourd (USVL1VR-Ls)	cmolsiB565
CmoCh02G017370	Cp4.1LG15g01350	Cucurbita pepo (Zucchini)	cmocpeB564
CmoCh02G017370	Cp4.1LG05g00720	Cucurbita pepo (Zucchini)	cmocpeB596
CmoCh02G017370	MELO3C018062.2	Melon (DHL92) v3.6.1	cmomedB638
CmoCh02G017370	CsaV3_3G028790	Cucumber (Chinese Long) v3	cmocucB0703
CmoCh02G017370	Cla97C07G130050	Watermelon (97103) v2	cmowmbB631
CmoCh02G017370	Bhi05G000073	Wax gourd	cmowgoB0725
CmoCh02G017370	CsGy3G025440	Cucumber (Gy14) v2	cgybcmoB368
CmoCh02G017370	Carg08913	Silver-seed gourd	carcmoB1057

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh02G017370	CmoCh19G001600	Cucurbita moschata (Rifu)	cmocmoB387

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh02G017370	Cucumber (Gy14) v1	cgycmoB0713
CmoCh02G017370	Cucurbita maxima (Rimu)	cmacmoB261
CmoCh02G017370	Cucurbita maxima (Rimu)	cmacmoB359
CmoCh02G017370	Cucurbita maxima (Rimu)	cmacmoB819
CmoCh02G017370	Cucurbita maxima (Rimu)	cmacmoB909
CmoCh02G017370	Wild cucumber (PI 183967)	cmocpiB588
CmoCh02G017370	Melon (DHL92) v3.5.1	cmomeB568
CmoCh02G017370	Watermelon (97103) v1	cmowmB559
CmoCh02G017370	Watermelon (97103) v1	cmowmB604
CmoCh02G017370	Cucurbita pepo (Zucchini)	cmocpeB549
CmoCh02G017370	Cucurbita pepo (Zucchini)	cmocpeB580
CmoCh02G017370	Cucurbita pepo (Zucchini)	cmocpeB590
CmoCh02G017370	Cucurbita pepo (Zucchini)	cmocpeB599
CmoCh02G017370	Bottle gourd (USVL1VR-Ls)	cmolsiB518
CmoCh02G017370	Bottle gourd (USVL1VR-Ls)	cmolsiB566
CmoCh02G017370	Cucumber (Gy14) v2	cgybcmoB362
CmoCh02G017370	Melon (DHL92) v3.6.1	cmomedB644
CmoCh02G017370	Melon (DHL92) v3.6.1	cmomedB648
CmoCh02G017370	Silver-seed gourd	carcmoB0100
CmoCh02G017370	Silver-seed gourd	carcmoB0321
CmoCh02G017370	Silver-seed gourd	carcmoB0331
CmoCh02G017370	Silver-seed gourd	carcmoB1287
CmoCh02G017370	Silver-seed gourd	carcmoB1450
CmoCh02G017370	Cucumber (Chinese Long) v3	cmocucB0695
CmoCh02G017370	Watermelon (97103) v2	cmowmbB622
CmoCh02G017370	Watermelon (97103) v2	cmowmbB627
CmoCh02G017370	Wax gourd	cmowgoB0710
CmoCh02G017370	Cucurbita moschata (Rifu)	cmocmoB213
CmoCh02G017370	Cucurbita moschata (Rifu)	cmocmoB303
CmoCh02G017370	Cucurbita moschata (Rifu)	cmocmoB437
CmoCh02G017370	Cucurbita moschata (Rifu)	cmocmoB446