Carg08913-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08913-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	U6 snRNA-associated Sm-like protein LSm5
Location	Cucurbita_argyrosperma_scaffold_020 : 711796 .. 714801 (+)
Sequence length	893

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAGGAGGCGGGACGGGAAATCACTAAATAAGACCTCGCGCCTCTTTGCATTTTTAACTGAATCGCTCACCTTCGCGGAAGACCTCCAATCCATGGCCAACAATCCCTCGCAGCTACTGCCCTCAGGTTCGCTTTCTGCTTCTTCTTCGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTCATTTTCCCCTCCTATTTCGGTTGAATTGGACTCTAATTTACTTGGTTTATGGTGAGAATTTGCAGAGTTGATCGATCGATGTATAGGGTCGAAAATATGGGTCATTATGAAAGGCGACAAGGAACTCGTCGGTACTCTCAGAGGATTCGATGTTTATGTCAACATGGTTCTTGAAGATGTTACTGAATAGTAAGGGCTTTTATGAGATCTAAACTCACATTTCTATGGTTTGCTCATTGTATTTCGCATAATTTGTTGTGTTTGAGTCTGTTCTGTTTGTTCTCTTTCTCTTATGAAGTGTTTGATGTGTTGATTTTAGTGTGGGGGAATATGAGGCGAGTAGAGGAAAGTATTTGGCTCAAGGTCGTATTTGTCTGTGTTTAAGGGATTGAAACGTGATAGAAAGTGACAGAATGTTGCGCTAGAGCAATTTGAGTTATTGAGCATGTGATTTTCATTGAATTATGGAGAGCTTTTGAGTTAAGGTTTAGAAATTCCCTTATTCAAATTTTCTGAGGGAACTGGACACTGGAGGTTTCTTTAGAAGCTAAGTAAAGTGATCCATAATCTCATGCCATACTGAAATAGAAGGAAAAGAGTTAACAAGAGAGGAGGATAACCTTAGCCATTCTCATTTCCTGCCAAGATTCCGTTGATGAAAGTGTTTCTTTTCATGGAGGTAAGGTAAAGTAGAGAACCAAAATCTCTCGTAAAGTAGAAGGAAAAAGTTGGCTCAAGTGTCGAGCAGTACTCTGCCTAGGTTGATACACATTGTTTCTTTTTCCACGCCTGATTCTCAACAAATTGGGGGTCAGTAATCGTGTTCCCTATCACTGTACAATTTTAATACCTTCTTCTATGTTGGGGATAGGTAAAATTAGCAAACAGATTTAAGCGGGATACATGATTGTTATTGTTCTATTCTTTCCCTTTTGGAGCTGTAAAGCTAGCAGATTATTGCATACTTTTCTCTTCCGGGGTCCGGTTGTGGATATATAACCAGATTGGGAAGCTCATAGTTGAGCATCAAGTTCTGAATGTGATGATCAAGATGTTTTAATTAACTCATCATTGGAAAACTCATGATGTTTTTCTTATTAAATATATGAAAATTGACTTGAATTCTCAATGGTTACTAACAAAAGGAGTAACGATTTGGTAAGAACACAAGGAGTTGTTAAATTGTTAAATTGTCTTTGCTTATGTTCTTAGAGCGACCCCTTCTAGTTTACTGACCATTCAAGCTTTTCATAGAACTTGTTTCAGCTTATTCTGATGTTTCCAGTACTGGGTTAATATGGATATTGAAGTGGTCATAAGTTCGTAATCTTCTTTCGTTCAAAAATGGGTGGCTCCATAAAGCCTACATCTAGATTATAATTAACCAATAAACGATCCATTCAACAAGAGTACTTGTTGTTGGAGCTAATATCACCATTGCTGATTTTCTTTCCTGTTCTACTAATCAAAATCTAGGGTGCGCTCCATTGGGCCTAAAATTTCTATCTTGGCACGTCTTTTATGCTTGTGGCATGTACGAGTTGCTGTCTTTTTTATGAACCTAATGACTCTTTGTTTTAATGAAGACTCATAGCGCTCTCTAGAATCTACTGAATGGTTTCACTCTCTCTGTATTACATTGTAGTGAGATCACTGCTGAGGGGAGACGGATAACAAAGCTGGATCAGATTCTACTCAATGGGAACAACATTGCTATTGTAAGTGACAATCACAGTTTTATTATTTTCATGCACTTGTTTGGGGAAGCCACAAGTCTTTAGACGATCTCCTCCTAGACCAATGAACAATGATTGTGTAAGAGGCCAAGCTTCATGATGGTTGTGGGTGTGCCCCAATCCCCATCTTTATAATGATAATAATAGTAATTTAAAGGAACCATCATTGTTCGTCCCAATGGTTAAATAGTCGAGTCTTAACTCACGTGCCTCTTATGTCATTCATATAAGTAGTTGTTTCATGAGATCAGTCAGTCATTCATATAAGTAGTTGTTTCATGAGATCAGTCAATGTGTGAGCAAGTTGACGTGGACGTTATTTAAAATTAGCCAACATGCACATGAACTCATATAAACAAATCTGTGCGAAAAAAACAAATAGAGAACTCAGAGTTGGTGTAGTTGTCCTTTTAAGATTAGTCAATATGATTGTTAGCTGCTCATCTAGACGAACTAGAAGTTCTTATTAACGTCTGATTGTTGAAGCAAATTGTTAAATTGCAGCTCGTCCCCGGTGGATCACCTGACCCAGAATAAGTGCAGAATATGAATAGCATGTTGTTCTGGTGGGGAAACCTTGCACGATTTTCATGGTTGGCTCCCAGCACCAAACATTTACTTTTCTATGGACGTAGAAAGACTCAGGTGACATCTTTCATGTATTTGATTGAAGTAAAGCGTCATAGTTTCGTGTTTCGTCGATGTGAATCTAGCTTTCTTCATATTCACTGCTTCGGCTGGAAATCTTTTGGCTTAATTCTGAATTCGACTGCTTTCAATGGGTTCACAAATTTTTTTAAAAGCTAGAGCTGTAATACCCTGAAGTAAAACACTTCTCCTGATTTTAAAACAATGAAGGAGATCGAATCAAATCCATAATCCAGCCAAGTCATACAAAGGAAGTTTGGTTTTATTATCACTTATAATTAGATTACAAGTTTGATGAAGTGTTGTTAAGAGTGTGTTTGGTATATCTTCTAATTTAAGTATTTTTTTCTTAAAATATTTTTAATAAAAGGCATTTTTCTACCTTTTTGAAAGGTATTTTTATGCGTACTTGGAAGGTTTTTGAT

mRNA sequence

AATAGGAGGCGGGACGGGAAATCACTAAATAAGACCTCGCGCCTCTTTGCATTTTTAACTGAATCGCTCACCTTCGCGGAAGACCTCCAATCCATGGCCAACAATCCCTCGCAGCTACTGCCCTCAGAGTTGATCGATCGATGTATAGGGTCGAAAATATGGGTCATTATGAAAGGCGACAAGGAACTCGTCGGTACTCTCAGAGGATTCGATGTTTATGTCAACATGGTTCTTGAAGATGTTACTGAATATGAGATCACTGCTGAGGGGAGACGGATAACAAAGCTGGATCAGATTCTACTCAATGGGAACAACATTGCTATTCTCGTCCCCGGTGGATCACCTGACCCAGAATAAGTGCAGAATATGAATAGCATGTTGTTCTGGTGGGGAAACCTTGCACGATTTTCATGGTTGGCTCCCAGCACCAAACATTTACTTTTCTATGGACGTAGAAAGACTCAGGTGACATCTTTCATGTATTTGATTGAAGTAAAGCGTCATAGTTTCGTGTTTCGTCGATGTGAATCTAGCTTTCTTCATATTCACTGCTTCGGCTGGAAATCTTTTGGCTTAATTCTGAATTCGACTGCTTTCAATGGGTTCACAAATTTTTTTAAAAGCTAGAGCTGTAATACCCTGAAGTAAAACACTTCTCCTGATTTTAAAACAATGAAGGAGATCGAATCAAATCCATAATCCAGCCAAGTCATACAAAGGAAGTTTGGTTTTATTATCACTTATAATTAGATTACAAGTTTGATGAAGTGTTGTTAAGAGTGTGTTTGGTATATCTTCTAATTTAAGTATTTTTTTCTTAAAATATTTTTAATAAAAGGCATTTTTCTACCTTTTTGAAAGGTATTTTTATGCGTACTTGGAAGGTTTTTGAT

Coding sequence (CDS)

AATAGGAGGCGGGACGGGAAATCACTAAATAAGACCTCGCGCCTCTTTGCATTTTTAACTGAATCGCTCACCTTCGCGGAAGACCTCCAATCCATGGCCAACAATCCCTCGCAGCTACTGCCCTCAGAGTTGATCGATCGATGTATAGGGTCGAAAATATGGGTCATTATGAAAGGCGACAAGGAACTCGTCGGTACTCTCAGAGGATTCGATGTTTATGTCAACATGGTTCTTGAAGATGTTACTGAATATGAGATCACTGCTGAGGGGAGACGGATAACAAAGCTGGATCAGATTCTACTCAATGGGAACAACATTGCTATTCTCGTCCCCGGTGGATCACCTGACCCAGAATAA

Protein sequence

NRRRDGKSLNKTSRLFAFLTESLTFAEDLQSMANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE

Homology

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BLAST of Carg08913-RA vs. NCBI nr
Match: XP_004152020.2 (PREDICTED: sm-like protein LSM5 [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 1.4e-42
Identity = 90/101 (89.11%), Postives = 92/101 (91.09%), Query Frame = 0


Query: 18  FLTESLTFAEDLQSMANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMV 77
           F   SL+F    + MA NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMV
Sbjct: 49  FFIHSLSFPVKSKFMATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMV 108

Query: 78  LEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE 119
           LEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 109 LEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE 149

[Close]

BLAST of Carg08913-RA vs. NCBI nr
Match: XP_008454507.1 (PREDICTED: sm-like protein LSM5 [Cucumis melo])

HSP 1 Score: 181.4 bits (459), Expect = 1.8e-42
Identity = 90/101 (89.11%), Postives = 92/101 (91.09%), Query Frame = 0


Query: 18  FLTESLTFAEDLQSMANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMV 77
           F   SL+F    + MA NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMV
Sbjct: 40  FFFHSLSFPVKSKFMATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMV 99

Query: 78  LEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE 119
           LEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 100 LEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE 140

[Close]

BLAST of Carg08913-RA vs. NCBI nr
Match: XP_021659196.1 (sm-like protein LSM5 [Hevea brasiliensis])

HSP 1 Score: 180.3 bits (456), Expect = 3.9e-42
Identity = 89/97 (91.75%), Postives = 90/97 (92.78%), Query Frame = 0


Query: 22  SLTFAEDLQSMANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDV 81
           SL     L  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDV
Sbjct: 15  SLLKLGSLNPMANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDV 74

Query: 82  TEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE 119
           TEYE+TAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 75  TEYEVTAEGRRITKLDQILLNGNNIAILVPGGSPDPE 111

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BLAST of Carg08913-RA vs. NCBI nr
Match: XP_004504703.1 (PREDICTED: sm-like protein LSM5 [Cicer arietinum] >XP_012085226.1 sm-like protein LSM5 [Jatropha curcas] >XP_013457335.1 sm-like protein LSM5 [Medicago truncatula] >XP_015575945.1 sm-like protein LSM5 [Ricinus communis] >XP_015957485.1 sm-like protein LSM5 [Arachis duranensis] >XP_016190536.1 sm-like protein LSM5 [Arachis ipaensis] >XP_016708763.1 PREDICTED: sm-like protein LSM5 [Gossypium hirsutum] >XP_017648195.1 PREDICTED: sm-like protein LSM5 [Gossypium arboreum] >XP_017970003.1 PREDICTED: sm-like protein LSM5 [Theobroma cacao] >XP_021274360.1 sm-like protein LSM5 [Herrania umbratica] >XP_021631942.1 sm-like protein LSM5 [Manihot esculenta] >XP_021683952.1 sm-like protein LSM5 [Hevea brasiliensis] >XP_022159125.1 sm-like protein LSM5 [Momordica charantia] >XP_022758624.1 sm-like protein LSM5 [Durio zibethinus] >XP_022930959.1 sm-like protein LSM5 [Cucurbita moschata] >XP_022995599.1 sm-like protein LSM5 [Cucurbita maxima] >XP_023532583.1 sm-like protein LSM5 [Cucurbita pepo subsp. pepo] >XP_023923008.1 sm-like protein LSM5 [Quercus suber] >XP_023923009.1 sm-like protein LSM5 [Quercus suber] >XP_023923155.1 sm-like protein LSM5 [Quercus suber] >XP_025691321.1 sm-like protein LSM5 [Arachis hypogaea] >XP_025639691.1 sm-like protein LSM5 [Arachis hypogaea] >XP_025639692.1 sm-like protein LSM5 [Arachis hypogaea] >AFK37213.1 unknown [Medicago truncatula] >EOX93980.1 Small nuclear ribonucleoprotein family protein [Theobroma cacao] >KDP26465.1 hypothetical protein JCGZ_17623 [Jatropha curcas] >KEH31366.1 u6 snRNA-associated-like-Smprotein [Medicago truncatula] >KHG13196.1 U6 snRNA-associated Sm-like protein LSm5 [Gossypium arboreum] >KHG18800.1 U6 snRNA-associated Sm-like protein LSm5 [Gossypium arboreum] >OAY32763.1 hypothetical protein MANES_13G044200 [Manihot esculenta] >GAU40652.1 hypothetical protein TSUD_83300 [Trifolium subterraneum] >OMO51904.1 hypothetical protein COLO4_37469 [Corchorus olitorius] >OMO99889.1 hypothetical protein CCACVL1_03561 [Corchorus capsularis] >POE97164.1 sm-like protein lsm5 [Quercus suber] >POE97355.1 sm-like protein lsm5 [Quercus suber] >PPR94282.1 hypothetical protein GOBAR_AA26387 [Gossypium barbadense])

HSP 1 Score: 179.5 bits (454), Expect = 6.7e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 32  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 91
           MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1   MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 92  RITKLDQILLNGNNIAILVPGGSPDPE 119
           RITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 61  RITKLDQILLNGNNIAILVPGGSPDPE 87

[Close]

BLAST of Carg08913-RA vs. NCBI nr
Match: ADR71256.1 (U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis])

HSP 1 Score: 179.1 bits (453), Expect = 8.8e-42
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 32  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 91
           MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYE+TAEGR
Sbjct: 1   MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEVTAEGR 60

Query: 92  RITKLDQILLNGNNIAILVPGGSPDPE 119
           RITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 61  RITKLDQILLNGNNIAILVPGGSPDPE 87

[Close]

BLAST of Carg08913-RA vs. TAIR10
Match: AT5G48870.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 169.1 bits (427), Expect = 1.6e-42
Identity = 81/85 (95.29%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 32  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 91
           MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVG L+GFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1   MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGR 60

Query: 92  RITKLDQILLNGNNIAILVPGGSPD 117
           R+TKLDQILLNGNNIAILVPGGSP+
Sbjct: 61  RVTKLDQILLNGNNIAILVPGGSPE 85

[Close]

BLAST of Carg08913-RA vs. TAIR10
Match: AT4G30330.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 50.4 bits (119), Expect = 8.5e-07
Identity = 28/77 (36.36%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 41  PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKL 100
           P  LI R + SK    IW+  + D  + G + GFD Y+N+VL++  E  I  + R+   L
Sbjct: 13  PINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKKTRK--PL 72

Query: 101 DQILLNGNNIAILVPGG 114
            +ILL G+NI +++  G
Sbjct: 73  GRILLKGDNITLMMNAG 87

[Close]

BLAST of Carg08913-RA vs. TAIR10
Match: AT2G18740.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.9e-06
Identity = 28/77 (36.36%), Postives = 43/77 (55.84%), Query Frame = 0


Query: 41  PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITKL 100
           P  LI R + SK    IW+  + D  + G + GFD Y+N+VL++  E  I    R+   L
Sbjct: 13  PINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKNTRK--PL 72

Query: 101 DQILLNGNNIAILVPGG 114
            +ILL G+NI +++  G
Sbjct: 73  GRILLKGDNITLMMNTG 87

[Close]

BLAST of Carg08913-RA vs. TAIR10
Match: AT3G14080.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 43.1 bits (100), Expect = 1.4e-04
Identity = 21/74 (28.38%), Postives = 38/74 (51.35%), Query Frame = 0


Query: 36  PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRITK 95
           P ++  S  +   +  K+ V+++  ++L+GTLR FD + N VLE   E  I  E      
Sbjct: 6   PEEIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIP 65

Query: 96  LDQILLNGNNIAIL 110
           L   ++ G N+ ++
Sbjct: 66  LGLYVIRGENVVLI 79

[Close]

BLAST of Carg08913-RA vs. TAIR10
Match: AT1G21190.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 42.0 bits (97), Expect = 3.0e-04
Identity = 21/49 (42.86%), Postives = 30/49 (61.22%), Query Frame = 0


Query: 41 PSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAE 90
          P +LI   I  +I+V ++ D+EL G L  FD ++NM+L DV E   T E
Sbjct: 12 PLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIE 60

[Close]

BLAST of Carg08913-RA vs. Swiss-Prot
Match: sp|Q9FKB0|LSM5_ARATH (Sm-like protein LSM5 OS=Arabidopsis thaliana OX=3702 GN=LSM5 PE=1 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 3.0e-41
Identity = 81/85 (95.29%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 32  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 91
           MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVG L+GFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1   MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGR 60

Query: 92  RITKLDQILLNGNNIAILVPGGSPD 117
           R+TKLDQILLNGNNIAILVPGGSP+
Sbjct: 61  RVTKLDQILLNGNNIAILVPGGSPE 85

[Close]

BLAST of Carg08913-RA vs. Swiss-Prot
Match: sp|Q2HJH0|LSM5_BOVIN (U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus OX=9913 GN=LSM5 PE=3 SV=3)

HSP 1 Score: 135.2 bits (339), Expect = 4.8e-31
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 35  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRIT 94
           NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8   NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67

Query: 95  KLDQILLNGNNIAILVPGG 114
           KLDQILLNGNNI +LVPGG
Sbjct: 68  KLDQILLNGNNITMLVPGG 86

[Close]

BLAST of Carg08913-RA vs. Swiss-Prot
Match: sp|Q9Y4Y9|LSM5_HUMAN (U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens OX=9606 GN=LSM5 PE=1 SV=3)

HSP 1 Score: 135.2 bits (339), Expect = 4.8e-31
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 35  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRIT 94
           NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8   NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67

Query: 95  KLDQILLNGNNIAILVPGG 114
           KLDQILLNGNNI +LVPGG
Sbjct: 68  KLDQILLNGNNITMLVPGG 86

[Close]

BLAST of Carg08913-RA vs. Swiss-Prot
Match: sp|P62322|LSM5_MOUSE (U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus OX=10090 GN=Lsm5 PE=3 SV=2)

HSP 1 Score: 135.2 bits (339), Expect = 4.8e-31
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 35  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRIT 94
           NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8   NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67

Query: 95  KLDQILLNGNNIAILVPGG 114
           KLDQILLNGNNI +LVPGG
Sbjct: 68  KLDQILLNGNNITMLVPGG 86

[Close]

BLAST of Carg08913-RA vs. Swiss-Prot
Match: sp|Q5R628|LSM5_PONAB (U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii OX=9601 GN=LSM5 PE=3 SV=3)

HSP 1 Score: 135.2 bits (339), Expect = 4.8e-31
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 35  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRIT 94
           NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8   NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67

Query: 95  KLDQILLNGNNIAILVPGG 114
           KLDQILLNGNNI +LVPGG
Sbjct: 68  KLDQILLNGNNITMLVPGG 86

[Close]

BLAST of Carg08913-RA vs. TrEMBL
Match: tr|A0A1S3BZJ2|A0A1S3BZJ2_CUCME (sm-like protein LSM5 OS=Cucumis melo OX=3656 GN=LOC103494906 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.2e-42
Identity = 90/101 (89.11%), Postives = 92/101 (91.09%), Query Frame = 0


Query: 18  FLTESLTFAEDLQSMANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMV 77
           F   SL+F    + MA NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMV
Sbjct: 40  FFFHSLSFPVKSKFMATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMV 99

Query: 78  LEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE 119
           LEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 100 LEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE 140

[Close]

BLAST of Carg08913-RA vs. TrEMBL
Match: tr|A0A2P4KVW6|A0A2P4KVW6_QUESU (Sm-like protein lsm5 OS=Quercus suber OX=58331 GN=CFP56_20016 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.4e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 32  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 91
           MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1   MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 92  RITKLDQILLNGNNIAILVPGGSPDPE 119
           RITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 61  RITKLDQILLNGNNIAILVPGGSPDPE 87

[Close]

BLAST of Carg08913-RA vs. TrEMBL
Match: tr|A0A0B0NQ45|A0A0B0NQ45_GOSAR (U6 snRNA-associated Sm-like protein LSm5 OS=Gossypium arboreum OX=29729 GN=F383_03135 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.4e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 32  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 91
           MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1   MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 92  RITKLDQILLNGNNIAILVPGGSPDPE 119
           RITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 61  RITKLDQILLNGNNIAILVPGGSPDPE 87

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BLAST of Carg08913-RA vs. TrEMBL
Match: tr|I3SAC1|I3SAC1_MEDTR (U6 snRNA-associated-like-Smprotein OS=Medicago truncatula OX=3880 GN=25493392 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.4e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 32  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 91
           MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1   MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 92  RITKLDQILLNGNNIAILVPGGSPDPE 119
           RITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 61  RITKLDQILLNGNNIAILVPGGSPDPE 87

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BLAST of Carg08913-RA vs. TrEMBL
Match: tr|A0A061DMN8|A0A061DMN8_THECC (Small nuclear ribonucleoprotein family protein OS=Theobroma cacao OX=3641 GN=TCM_003004 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.4e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 32  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 91
           MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1   MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60

Query: 92  RITKLDQILLNGNNIAILVPGGSPDPE 119
           RITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 61  RITKLDQILLNGNNIAILVPGGSPDPE 87

The following BLAST results are available for this feature:

BLAST of Carg08913-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152020.2	1.4e-42	89.11	PREDICTED: sm-like protein LSM5 [Cucumis sativus]	[more]
XP_008454507.1	1.8e-42	89.11	PREDICTED: sm-like protein LSM5 [Cucumis melo]	[more]
XP_021659196.1	3.9e-42	91.75	sm-like protein LSM5 [Hevea brasiliensis]	[more]
XP_004504703.1	6.7e-42	100.00	PREDICTED: sm-like protein LSM5 [Cicer arietinum] >XP_012085226.1 sm-like protei...	[more]
ADR71256.1	8.8e-42	98.85	U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis]	[more]

BLAST of Carg08913-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G48870.1	1.6e-42	95.29	Small nuclear ribonucleoprotein family protein	[more]
AT4G30330.1	8.5e-07	36.36	Small nuclear ribonucleoprotein family protein	[more]
AT2G18740.1	1.9e-06	36.36	Small nuclear ribonucleoprotein family protein	[more]
AT3G14080.1	1.4e-04	28.38	Small nuclear ribonucleoprotein family protein	[more]
AT1G21190.1	3.0e-04	42.86	Small nuclear ribonucleoprotein family protein	[more]

BLAST of Carg08913-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FKB0\|LSM5_ARATH	3.0e-41	95.29	Sm-like protein LSM5 OS=Arabidopsis thaliana OX=3702 GN=LSM5 PE=1 SV=1	[more]
sp\|Q2HJH0\|LSM5_BOVIN	4.8e-31	79.75	U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus OX=9913 GN=LSM5 PE=3 SV=3	[more]
sp\|Q9Y4Y9\|LSM5_HUMAN	4.8e-31	79.75	U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens OX=9606 GN=LSM5 PE=1 SV...	[more]
sp\|P62322\|LSM5_MOUSE	4.8e-31	79.75	U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus OX=10090 GN=Lsm5 PE=3 S...	[more]
sp\|Q5R628\|LSM5_PONAB	4.8e-31	79.75	U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii OX=9601 GN=LSM5 PE=3 SV...	[more]

BLAST of Carg08913-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BZJ2\|A0A1S3BZJ2_CUCME	1.2e-42	89.11	sm-like protein LSM5 OS=Cucumis melo OX=3656 GN=LOC103494906 PE=4 SV=1	[more]
tr\|A0A2P4KVW6\|A0A2P4KVW6_QUESU	4.4e-42	100.00	Sm-like protein lsm5 OS=Quercus suber OX=58331 GN=CFP56_20016 PE=4 SV=1	[more]
tr\|A0A0B0NQ45\|A0A0B0NQ45_GOSAR	4.4e-42	100.00	U6 snRNA-associated Sm-like protein LSm5 OS=Gossypium arboreum OX=29729 GN=F383_...	[more]
tr\|I3SAC1\|I3SAC1_MEDTR	4.4e-42	100.00	U6 snRNA-associated-like-Smprotein OS=Medicago truncatula OX=3880 GN=25493392 PE...	[more]
tr\|A0A061DMN8\|A0A061DMN8_THECC	4.4e-42	100.00	Small nuclear ribonucleoprotein family protein OS=Theobroma cacao OX=3641 GN=TCM...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR010920	LSM_dom_sf
IPR033871	LSm5
IPR001163	LSM_dom_euk/arc

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg08913	Carg08913	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg08913-RA	Carg08913-RA-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg08913-RA.exon.1	Carg08913-RA.exon.1	exon
Carg08913-RA.exon.2	Carg08913-RA.exon.2	exon
Carg08913-RA.exon.3	Carg08913-RA.exon.3	exon
Carg08913-RA.exon.4	Carg08913-RA.exon.4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg08913-RA.CDS.1	Carg08913-RA.CDS.1	CDS
Carg08913-RA.CDS.2	Carg08913-RA.CDS.2	CDS
Carg08913-RA.CDS.3	Carg08913-RA.CDS.3	CDS
Carg08913-RA.CDS.4	Carg08913-RA.CDS.4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg08913-RA.three_prime_UTR.1	Carg08913-RA.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 43..111 e-value: 8.0E-21 score: 85.2
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 44..111 e-value: 3.4E-20 score: 71.4
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 40..116 e-value: 2.6E-26 score: 93.0
IPR033871	Sm-like protein LSm5	PANTHER	PTHR20971	U6 SNRNA-ASSOCIATED PROTEIN	coord: 32..114
IPR033871	Sm-like protein LSm5	CDD	cd01732	LSm5	coord: 38..113 e-value: 8.06856E-52 score: 159.332
IPR010920	LSM domain superfamily	SUPERFAMILY	SSF50182	Sm-like ribonucleoproteins	coord: 39..112