Carg08266 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08266
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Oleosin family protein
Location	Cucurbita_argyrosperma_scaffold_015 : 506080 .. 506430 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCAATCAATCAAGACCAGCGATCAGCCGGACTCTCTACGACTCCCCTCCCTCCTCTCGCCACATCGTCAAGTTCTTGACGGCGGCAACCATCGGTACCATCTTCCTCGTCTCTTCTGGATTGACTATAACAGGAACAGTTCTAATCCTCATACTGTCCACTCCGATTCTCGTCTTGTTTAGTCCGATTTTGGTACCCGCGGCAACTGTTCTGATCCTGGCGGCTGCCGGATTCTTCTTCTCAGCAACTTGTACGGTGGCAGCGATAGCGGCACTGACGTGGATGTACAGGTACGTGACGGGGAAGAGGCCGCTAGAGGCAAAATTACAGAAACGGGGAGGGAGATGA

mRNA sequence

ATGTCCAATCAATCAAGACCAGCGATCAGCCGGACTCTCTACGACTCCCCTCCCTCCTCTCGCCACATCGTCAAGTTCTTGACGGCGGCAACCATCGGTACCATCTTCCTCGTCTCTTCTGGATTGACTATAACAGGAACAGTTCTAATCCTCATACTGTCCACTCCGATTCTCGTCTTGTTTAGTCCGATTTTGGTACCCGCGGCAACTGTTCTGATCCTGGCGGCTGCCGGATTCTTCTTCTCAGCAACTTGTACGGTGGCAGCGATAGCGGCACTGACGTGGATGTACAGGTACGTGACGGGGAAGAGGCCGCTAGAGGCAAAATTACAGAAACGGGGAGGGAGATGA

Coding sequence (CDS)

ATGTCCAATCAATCAAGACCAGCGATCAGCCGGACTCTCTACGACTCCCCTCCCTCCTCTCGCCACATCGTCAAGTTCTTGACGGCGGCAACCATCGGTACCATCTTCCTCGTCTCTTCTGGATTGACTATAACAGGAACAGTTCTAATCCTCATACTGTCCACTCCGATTCTCGTCTTGTTTAGTCCGATTTTGGTACCCGCGGCAACTGTTCTGATCCTGGCGGCTGCCGGATTCTTCTTCTCAGCAACTTGTACGGTGGCAGCGATAGCGGCACTGACGTGGATGTACAGGTACGTGACGGGGAAGAGGCCGCTAGAGGCAAAATTACAGAAACGGGGAGGGAGATGA

Protein sequence

MSNQSRPAISRTLYDSPPSSRHIVKFLTAATIGTIFLVSSGLTITGTVLILILSTPILVLFSPILVPAATVLILAAAGFFFSATCTVAAIAALTWMYRYVTGKRPLEAKLQKRGGR

Homology

[Close]

BLAST of Carg08266 vs. NCBI nr
Match: XP_004148427.1 (PREDICTED: oleosin 16 kDa-like [Cucumis sativus] >KGN62791.1 hypothetical protein Csa_2G372860 [Cucumis sativus])

HSP 1 Score: 94.0 bits (232), Expect = 3.6e-16
Identity = 83/109 (76.15%), Postives = 94/109 (86.24%), Query Frame = 0


Query: 1   MSNQSRPAISRTLYDSPPSSRHIVKFLTAATIGTIFLVSSGLTITGTVLILILXXXXXXX 60
           MS+QS+P  +RTLY+S  SSR  VKFLTAATI T FLVSSG TITGTVLILIL XXXXXX
Sbjct: 1   MSDQSKPVSARTLYNSTSSSRQAVKFLTAATIATFFLVSSGFTITGTVLILILSXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXATCTVAAIAALTWMYRYVTGKRPLEAK 110
           XXXXXXXXXXXXXXXXXXXXXX TC VAA+AAL+W+Y Y+TG +P+ A+
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXTCAVAAVAALSWLYSYMTGDQPVGAE 109

[Close]

BLAST of Carg08266 vs. NCBI nr
Match: XP_016899960.1 (PREDICTED: oleosin 1-like [Cucumis melo])

HSP 1 Score: 91.3 bits (225), Expect = 2.4e-15
Identity = 80/109 (73.39%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 1   MSNQSRPAISRTLYDSPPSSRHIVKFLTAATIGTIFLVSSGLTITGTVLILILXXXXXXX 60
           MS++S+P  +  LY+S PSSR  VKFLTAATIG  FLVSSG TITGTVL+LIL XXXXXX
Sbjct: 1   MSDRSKPLSTHALYNSTPSSRQTVKFLTAATIGAFFLVSSGFTITGTVLLLILSXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXATCTVAAIAALTWMYRYVTGKRPLEAK 110
           XXXXXXXXXXXXXXXXXXXXXX TC V A+AAL+W+YRY+TG +P  A+
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXTCVVGAVAALSWLYRYMTGNQPAGAE 109

[Close]

BLAST of Carg08266 vs. NCBI nr
Match: XP_002275496.1 (PREDICTED: oleosin 1 [Vitis vinifera] >CAN74835.1 hypothetical protein VITISV_023324 [Vitis vinifera])

HSP 1 Score: 79.3 bits (194), Expect = 9.3e-12
Identity = 48/105 (45.71%), Postives = 58/105 (55.24%), Query Frame = 0


Query: 1   MSNQSRPAISRTLYDSPPSSRHIVKFLTAATIGTIFLVSSGLTITGTVLILILXXXXXXX 60
           MS+Q +P ++  LYDS PSSR  VKFLTAATIGTI LV SGLT+TGTV+ LI+       
Sbjct: 1   MSDQPKP-VTPKLYDSAPSSRQAVKFLTAATIGTILLVLSGLTLTGTVIALIIATPALVV 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXATCTVAAIAALTWMYRYVTGKRP 106
                                   C V A+ AL+W+Y YV GK P
Sbjct: 61  FSPILVPAGTVIFLATTGFLFSGCCGVTALMALSWLYEYVAGKHP 104

[Close]

BLAST of Carg08266 vs. NCBI nr
Match: XP_010668835.1 (PREDICTED: oleosin 16 kDa [Beta vulgaris subsp. vulgaris] >KMT18103.1 hypothetical protein BVRB_2g032920 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 75.5 bits (184), Expect = 1.3e-10
Identity = 42/100 (42.00%), Postives = 57/100 (57.00%), Query Frame = 0


Query: 9   ISRTLYDSPPSSRHIVKFLTAATIGTIFLVSSGLTITGTVLILILXXXXXXXXXXXXXXX 68
           +++ LY S P+SR  VKFLTA+TIGT+ L+ SGLT+TGTVL L+L               
Sbjct: 16  LTQKLYQSTPTSRQTVKFLTASTIGTVLLLLSGLTLTGTVLALVLATPVLVLFSPILVPA 75

Query: 69  XXXXXXXXXXXXXXATCTVAAIAALTWMYRYVTGKRPLEA 109
                           C VAA++AL+W+Y+Y TGK P+ A
Sbjct: 76  TMVVFVIASGFVFSGGCGVAAVSALSWIYQYTTGKHPMGA 115

[Close]

BLAST of Carg08266 vs. NCBI nr
Match: XP_010417366.1 (PREDICTED: oleosin 1-like [Camelina sativa] >XP_010417367.1 PREDICTED: oleosin 1-like [Camelina sativa])

HSP 1 Score: 74.7 bits (182), Expect = 2.3e-10
Identity = 56/100 (56.00%), Postives = 67/100 (67.00%), Query Frame = 0


Query: 9   ISRTLYDSPPSSRHIVKFLTAATIGTIFLVSSGLTITGTVLILILXXXXXXXXXXXXXXX 68
           I ++L+DS PS+R IV+FLTA+TIG   LV SGLT+TGTV+ LI+              X
Sbjct: 16  IMKSLHDSSPSTRQIVRFLTASTIGLSLLVLSGLTLTGTVIGLIVATPLMVLFSPVLVPX 75

Query: 69  XXXXXXXXXXXXXXATCTVAAIAALTWMYRYVTGKRPLEA 109
           XXXXXXXXXX      C VAA  ALTW+YRYVTGK P+ A
Sbjct: 76  XXXXXXXXXXFLFSGGCGVAAATALTWIYRYVTGKHPMGA 115

[Close]

BLAST of Carg08266 vs. TAIR10
Match: AT2G25890.1 (Oleosin family protein)

HSP 1 Score: 74.7 bits (182), Expect = 4.2e-14
Identity = 45/105 (42.86%), Postives = 58/105 (55.24%), Query Frame = 0


Query: 4   QSRPAISRTLYDSPPSSRHIVKFLTAATIGTIFLVSSGLTITGTVLILILXXXXXXXXXX 63
           Q +  I R+L++S PS+R IV+F+TAATIG   LV SGLT+TGTV+ LI+          
Sbjct: 9   QQQQPIMRSLHESSPSTRQIVRFVTAATIGLSLLVLSGLTLTGTVIGLIVATPLMVLFSP 68

Query: 64  XXXXXXXXXXXXXXXXXXXATCTVAAIAALTWMYRYVTGKRPLEA 109
                                C VAA  ALTW+Y+YVTGK P+ A
Sbjct: 69  VLVPAVITIGLLTMGFLFSGGCGVAAATALTWIYKYVTGKHPMGA 113

[Close]

BLAST of Carg08266 vs. TAIR10
Match: AT5G51210.1 (oleosin3)

HSP 1 Score: 40.8 bits (94), Expect = 6.7e-04
Identity = 33/106 (31.13%), Postives = 49/106 (46.23%), Query Frame = 0


Query: 1   MSNQSR---PAISR-TLYDSPPSSRHIVKFLTAATIGTIFLVSSGLTITGTVLILILXXX 60
           M++Q+R     ISR +  ++ P +R +VK  TA T G   LV SGLT+ GTV+ L +   
Sbjct: 1   MADQTRTHHEMISRDSTQEAHPKARQMVKAATAVTAGGSLLVLSGLTLAGTVIALTVATP 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXATCTVAAIAALTWMYRYVTG 103
                                         +AAI A +W+YR++TG
Sbjct: 61  LLVIFSPVLVPAVVTVALIITGFLASGGFGIAAITAFSWLYRHMTG 106

[Close]

BLAST of Carg08266 vs. TrEMBL
Match: tr|A0A0A0LRY3|A0A0A0LRY3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G372860 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.4e-16
Identity = 83/109 (76.15%), Postives = 94/109 (86.24%), Query Frame = 0


Query: 1   MSNQSRPAISRTLYDSPPSSRHIVKFLTAATIGTIFLVSSGLTITGTVLILILXXXXXXX 60
           MS+QS+P  +RTLY+S  SSR  VKFLTAATI T FLVSSG TITGTVLILIL XXXXXX
Sbjct: 1   MSDQSKPVSARTLYNSTSSSRQAVKFLTAATIATFFLVSSGFTITGTVLILILSXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXATCTVAAIAALTWMYRYVTGKRPLEAK 110
           XXXXXXXXXXXXXXXXXXXXXX TC VAA+AAL+W+Y Y+TG +P+ A+
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXTCAVAAVAALSWLYSYMTGDQPVGAE 109

[Close]

BLAST of Carg08266 vs. TrEMBL
Match: tr|A0A1S4DW75|A0A1S4DW75_CUCME (oleosin 1-like OS=Cucumis melo OX=3656 GN=LOC103488162 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.6e-15
Identity = 80/109 (73.39%), Postives = 92/109 (84.40%), Query Frame = 0


Query: 1   MSNQSRPAISRTLYDSPPSSRHIVKFLTAATIGTIFLVSSGLTITGTVLILILXXXXXXX 60
           MS++S+P  +  LY+S PSSR  VKFLTAATIG  FLVSSG TITGTVL+LIL XXXXXX
Sbjct: 1   MSDRSKPLSTHALYNSTPSSRQTVKFLTAATIGAFFLVSSGFTITGTVLLLILSXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXATCTVAAIAALTWMYRYVTGKRPLEAK 110
           XXXXXXXXXXXXXXXXXXXXXX TC V A+AAL+W+YRY+TG +P  A+
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXTCVVGAVAALSWLYRYMTGNQPAGAE 109

[Close]

BLAST of Carg08266 vs. TrEMBL
Match: tr|A5BPD9|A5BPD9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_04s0008g00540 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.2e-12
Identity = 48/105 (45.71%), Postives = 58/105 (55.24%), Query Frame = 0


Query: 1   MSNQSRPAISRTLYDSPPSSRHIVKFLTAATIGTIFLVSSGLTITGTVLILILXXXXXXX 60
           MS+Q +P ++  LYDS PSSR  VKFLTAATIGTI LV SGLT+TGTV+ LI+       
Sbjct: 1   MSDQPKP-VTPKLYDSAPSSRQAVKFLTAATIGTILLVLSGLTLTGTVIALIIATPALVV 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXATCTVAAIAALTWMYRYVTGKRP 106
                                   C V A+ AL+W+Y YV GK P
Sbjct: 61  FSPILVPAGTVIFLATTGFLFSGCCGVTALMALSWLYEYVAGKHP 104

[Close]

BLAST of Carg08266 vs. TrEMBL
Match: tr|Q494N8|Q494N8_ARATH (Oleosin OS=Arabidopsis thaliana OX=3702 GN=At2g25890 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.5e-10
Identity = 45/105 (42.86%), Postives = 58/105 (55.24%), Query Frame = 0


Query: 4   QSRPAISRTLYDSPPSSRHIVKFLTAATIGTIFLVSSGLTITGTVLILILXXXXXXXXXX 63
           Q +  I R+L++S PS+R IV+F+TAATIG   LV SGLT+TGTV+ LI+          
Sbjct: 9   QQQQPIMRSLHESSPSTRQIVRFVTAATIGLSLLVLSGLTLTGTVIGLIVATPLMVLFSP 68

Query: 64  XXXXXXXXXXXXXXXXXXXATCTVAAIAALTWMYRYVTGKRPLEA 109
                                C VAA  ALTW+Y+YVTGK P+ A
Sbjct: 69  VLVPAVITIGLLTMGFLFSGGCGVAAATALTWIYKYVTGKHPMGA 113

[Close]

BLAST of Carg08266 vs. TrEMBL
Match: tr|A0A178VRV6|A0A178VRV6_ARATH (Oleosin OS=Arabidopsis thaliana OX=3702 GN=AXX17_At2g21730 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.5e-10
Identity = 45/105 (42.86%), Postives = 58/105 (55.24%), Query Frame = 0


Query: 4   QSRPAISRTLYDSPPSSRHIVKFLTAATIGTIFLVSSGLTITGTVLILILXXXXXXXXXX 63
           Q +  I R+L++S PS+R IV+F+TAATIG   LV SGLT+TGTV+ LI+          
Sbjct: 9   QQQQPIMRSLHESSPSTRQIVRFVTAATIGLSLLVLSGLTLTGTVIGLIVATPLMVLFSP 68

Query: 64  XXXXXXXXXXXXXXXXXXXATCTVAAIAALTWMYRYVTGKRPLEA 109
                                C VAA  ALTW+Y+YVTGK P+ A
Sbjct: 69  VLVPAVITIGLLTMGFLFSGGCGVAAATALTWIYKYVTGKHPMGA 113

The following BLAST results are available for this feature:

BLAST of Carg08266 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148427.1	3.6e-16	76.15	PREDICTED: oleosin 16 kDa-like [Cucumis sativus] >KGN62791.1 hypothetical protei...	[more]
XP_016899960.1	2.4e-15	73.39	PREDICTED: oleosin 1-like [Cucumis melo]	[more]
XP_002275496.1	9.3e-12	45.71	PREDICTED: oleosin 1 [Vitis vinifera] >CAN74835.1 hypothetical protein VITISV_02...	[more]
XP_010668835.1	1.3e-10	42.00	PREDICTED: oleosin 16 kDa [Beta vulgaris subsp. vulgaris] >KMT18103.1 hypothetic...	[more]
XP_010417366.1	2.3e-10	56.00	PREDICTED: oleosin 1-like [Camelina sativa] >XP_010417367.1 PREDICTED: oleosin 1...	[more]

BLAST of Carg08266 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G25890.1	4.2e-14	42.86	Oleosin family protein	[more]
AT5G51210.1	6.7e-04	31.13	oleosin3	[more]

BLAST of Carg08266 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg08266 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LRY3\|A0A0A0LRY3_CUCSA	2.4e-16	76.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G372860 PE=4 SV=1	[more]
tr\|A0A1S4DW75\|A0A1S4DW75_CUCME	1.6e-15	73.39	oleosin 1-like OS=Cucumis melo OX=3656 GN=LOC103488162 PE=4 SV=1	[more]
tr\|A5BPD9\|A5BPD9_VITVI	6.2e-12	45.71	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_04s0008g00540 PE=4 SV=...	[more]
tr\|Q494N8\|Q494N8_ARATH	1.5e-10	42.86	Oleosin OS=Arabidopsis thaliana OX=3702 GN=At2g25890 PE=2 SV=1	[more]
tr\|A0A178VRV6\|A0A178VRV6_ARATH	1.5e-10	42.86	Oleosin OS=Arabidopsis thaliana OX=3702 GN=AXX17_At2g21730 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0012511	monolayer-surrounded lipid storage body
GO:0016021	integral component of membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR000136	Oleosin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0012511	monolayer-surrounded lipid storage body
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08266-RA	Carg08266-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000136	Oleosin	PFAM	PF01277	Oleosin	coord: 22..108 e-value: 5.0E-30 score: 103.4
IPR000136	Oleosin	PANTHER	PTHR33203	FAMILY NOT NAMED	coord: 15..108
None	No IPR available	PANTHER	PTHR33203:SF3	OLEOSIN	coord: 15..108

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08266	Cla022191	Watermelon (97103) v1	carwmB0058
Carg08266	Csa2G372860	Cucumber (Chinese Long) v2	carcuB0059
Carg08266	MELO3C011123	Melon (DHL92) v3.5.1	carmeB0058
Carg08266	ClCG08G012050	Watermelon (Charleston Gray)	carwcgB0063
Carg08266	CSPI02G22010	Wild cucumber (PI 183967)	carcpiB0063
Carg08266	Cucsa.161000	Cucumber (Gy14) v1	carcgyB0066
Carg08266	CmaCh05G005770	Cucurbita maxima (Rimu)	carcmaB0083
Carg08266	CmoCh05G006010	Cucurbita moschata (Rifu)	carcmoB0087
Carg08266	Lsi08G010620	Bottle gourd (USVL1VR-Ls)	carlsiB056
Carg08266	Cp4.1LG11g05050	Cucurbita pepo (Zucchini)	carcpeB0079
Carg08266	CsGy2G021760	Cucumber (Gy14) v2	carcgybB0060
Carg08266	MELO3C011123.2	Melon (DHL92) v3.6.1	carmedB0059
Carg08266	CsaV3_2G030640	Cucumber (Chinese Long) v3	carcucB0065
Carg08266	Cla97C08G155190	Watermelon (97103) v2	carwmbB0061
Carg08266	Bhi04G000720	Wax gourd	carwgoB0068

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08266	Silver-seed gourd	carcarB066
Carg08266	Cucurbita maxima (Rimu)	carcmaB0071
Carg08266	Cucurbita maxima (Rimu)	carcmaB0074
Carg08266	Cucurbita moschata (Rifu)	carcmoB0078
Carg08266	Cucurbita pepo (Zucchini)	carcpeB0085
Carg08266	Cucurbita pepo (Zucchini)	carcpeB0087
Carg08266	Bottle gourd (USVL1VR-Ls)	carlsiB054
Carg08266	Melon (DHL92) v3.6.1	carmedB0061
Carg08266	Watermelon (97103) v1	carwmB0060