Carg08266-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCCAATCAATCAAGACCAGCGATCAGCCGGACTCTCTACGACTCCCCTCCCTCCTCTCGCCACATCGTCAAGTTCTTGACGGCGGCAACCATCGGTACCATCTTCCTCGTCTCTTCTGGATTGACTATAACAGGAACAGTTCTAATCCTCATACTGTCCACTCCGATTCTCGTCTTGTTTAGTCCGATTTTGGTACCCGCGGCAACTGTTCTGATCCTGGCGGCTGCCGGATTCTTCTTCTCAGCAACTTGTACGGTGGCAGCGATAGCGGCACTGACGTGGATGTACAGGTACGTGACGGGGAAGAGGCCGCTAGAGGCAAAATTACAGAAACGGGGAGGGAGATGA ATGTCCAATCAATCAAGACCAGCGATCAGCCGGACTCTCTACGACTCCCCTCCCTCCTCTCGCCACATCGTCAAGTTCTTGACGGCGGCAACCATCGGTACCATCTTCCTCGTCTCTTCTGGATTGACTATAACAGGAACAGTTCTAATCCTCATACTGTCCACTCCGATTCTCGTCTTGTTTAGTCCGATTTTGGTACCCGCGGCAACTGTTCTGATCCTGGCGGCTGCCGGATTCTTCTTCTCAGCAACTTGTACGGTGGCAGCGATAGCGGCACTGACGTGGATGTACAGGTACGTGACGGGGAAGAGGCCGCTAGAGGCAAAATTACAGAAACGGGGAGGGAGATGA ATGTCCAATCAATCAAGACCAGCGATCAGCCGGACTCTCTACGACTCCCCTCCCTCCTCTCGCCACATCGTCAAGTTCTTGACGGCGGCAACCATCGGTACCATCTTCCTCGTCTCTTCTGGATTGACTATAACAGGAACAGTTCTAATCCTCATACTGTCCACTCCGATTCTCGTCTTGTTTAGTCCGATTTTGGTACCCGCGGCAACTGTTCTGATCCTGGCGGCTGCCGGATTCTTCTTCTCAGCAACTTGTACGGTGGCAGCGATAGCGGCACTGACGTGGATGTACAGGTACGTGACGGGGAAGAGGCCGCTAGAGGCAAAATTACAGAAACGGGGAGGGAGATGA MSNQSRPAISRTLYDSPPSSRHIVKFLTAATIGTIFLVSSGLTITGTVLILILSTPILVLFSPILVPAATVLILAAAGFFFSATCTVAAIAALTWMYRYVTGKRPLEAKLQKRGGR
BLAST of Carg08266-RA vs. NCBI nr
Match: XP_004148427.1 (PREDICTED: oleosin 16 kDa-like [Cucumis sativus] >KGN62791.1 hypothetical protein Csa_2G372860 [Cucumis sativus]) HSP 1 Score: 94.0 bits (232), Expect = 3.6e-16 Identity = 83/109 (76.15%), Postives = 94/109 (86.24%), Query Frame = 0
BLAST of Carg08266-RA vs. NCBI nr
Match: XP_016899960.1 (PREDICTED: oleosin 1-like [Cucumis melo]) HSP 1 Score: 91.3 bits (225), Expect = 2.4e-15 Identity = 80/109 (73.39%), Postives = 92/109 (84.40%), Query Frame = 0
BLAST of Carg08266-RA vs. NCBI nr
Match: XP_002275496.1 (PREDICTED: oleosin 1 [Vitis vinifera] >CAN74835.1 hypothetical protein VITISV_023324 [Vitis vinifera]) HSP 1 Score: 79.3 bits (194), Expect = 9.3e-12 Identity = 48/105 (45.71%), Postives = 58/105 (55.24%), Query Frame = 0
BLAST of Carg08266-RA vs. NCBI nr
Match: XP_010668835.1 (PREDICTED: oleosin 16 kDa [Beta vulgaris subsp. vulgaris] >KMT18103.1 hypothetical protein BVRB_2g032920 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 75.5 bits (184), Expect = 1.3e-10 Identity = 42/100 (42.00%), Postives = 57/100 (57.00%), Query Frame = 0
BLAST of Carg08266-RA vs. NCBI nr
Match: XP_010417366.1 (PREDICTED: oleosin 1-like [Camelina sativa] >XP_010417367.1 PREDICTED: oleosin 1-like [Camelina sativa]) HSP 1 Score: 74.7 bits (182), Expect = 2.3e-10 Identity = 56/100 (56.00%), Postives = 67/100 (67.00%), Query Frame = 0
BLAST of Carg08266-RA vs. TAIR10
Match: AT2G25890.1 (Oleosin family protein) HSP 1 Score: 74.7 bits (182), Expect = 4.2e-14 Identity = 45/105 (42.86%), Postives = 58/105 (55.24%), Query Frame = 0
BLAST of Carg08266-RA vs. TAIR10
Match: AT5G51210.1 (oleosin3) HSP 1 Score: 40.8 bits (94), Expect = 6.7e-04 Identity = 33/106 (31.13%), Postives = 49/106 (46.23%), Query Frame = 0
BLAST of Carg08266-RA vs. TrEMBL
Match: tr|A0A0A0LRY3|A0A0A0LRY3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G372860 PE=4 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 2.4e-16 Identity = 83/109 (76.15%), Postives = 94/109 (86.24%), Query Frame = 0
BLAST of Carg08266-RA vs. TrEMBL
Match: tr|A0A1S4DW75|A0A1S4DW75_CUCME (oleosin 1-like OS=Cucumis melo OX=3656 GN=LOC103488162 PE=4 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 1.6e-15 Identity = 80/109 (73.39%), Postives = 92/109 (84.40%), Query Frame = 0
BLAST of Carg08266-RA vs. TrEMBL
Match: tr|A5BPD9|A5BPD9_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_04s0008g00540 PE=4 SV=1) HSP 1 Score: 79.3 bits (194), Expect = 6.2e-12 Identity = 48/105 (45.71%), Postives = 58/105 (55.24%), Query Frame = 0
BLAST of Carg08266-RA vs. TrEMBL
Match: tr|Q494N8|Q494N8_ARATH (Oleosin OS=Arabidopsis thaliana OX=3702 GN=At2g25890 PE=2 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 1.5e-10 Identity = 45/105 (42.86%), Postives = 58/105 (55.24%), Query Frame = 0
BLAST of Carg08266-RA vs. TrEMBL
Match: tr|A0A178VRV6|A0A178VRV6_ARATH (Oleosin OS=Arabidopsis thaliana OX=3702 GN=AXX17_At2g21730 PE=3 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 1.5e-10 Identity = 45/105 (42.86%), Postives = 58/105 (55.24%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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