Carg06366 (gene) Silver-seed gourd

Overview
NameCarg06366
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_016 : 1217876 .. 1220261 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATGACGTACTGAATTGGACGCGTCCAAGCAACGCCAAGGCGGTCGATACTCTTTGATGGTATAAACATAAAGGGGGAGGAATAAGCGTCAAAGTTCAAATCAATCTCTGTTTTGTACGTCTCTGTCTCTCCTAATCGCCATTTTCACGGAGCACACCAAAATCTCTCTTGCATCGTAAGCAATCTCTCTCTCTCTCTCTCTCACTCACTCTTTTTTCTTTTTTCATTTTGTTCTTAGATTTATCATCGATTTTTTGTGGTTTTGTTTCGATCGCATTTCTTCGTGTTGTGGATTTGTTGCTAGGAGAACTTGTTTGTCTCTGTAAACTGTTTTTGATTCCGGTTTCTGGTTCTAATCTCCATCATTCACCGTTTGTTCAAGTTATCTCCATTTTTATTGTGATTATGTTCTCATGAATTTCACTCGGATGCTTTTCTTTTTCTTTTTCGTCCTCTCTGGAATTTTTTGAACTGTTTTTTCGAAGAACGATTGAACGTAGGTTAGTTTTTAAAGATCGTTTCATCTCCGAGTTTGTCGGTGTTCTTCGGTTCATATTTTGCTGTTTATCGTTCATCGCCACTATAGGTCGCCTTCGAAGTTGTAGTGTTAAAGTTTTTGATCGATTCCGTTGTGAACTTTTAATGTTTTGATGTTGAATTAATGAGTGAATATGATTTTACCGGAAAATAGCTTGAACTAATTGGTTGAATAATCTATTCCTTTGTTTGATTGATTCTGGCGTAGACTGTTGCGAAGGATCATGTGCATAGAATCGTAAATTTCGCTGAGTTAATCTTATTTGATCATATGTAATTTTAGTTGATCTTTAATTAGTTTCGAAAGAATTGAATAAGCTAAAACTTAAACCTCAATCGATAAATGATTCGAGGACACCAAGAATTTCTTACATATCAGCCTCTGGTTTTTCATCTGTGTTCATTCTGTTCATTTAGGGACCAACACAAAATTTCCCCCAATCATGTAAAATTACTTGCTGATATAACAATATCTTGTTTCTAGTCTGTTCATAGTTTGGTTACTGCTCTCGGAATCTTAAAGAAATATGGGAGGTGGGAAGGACAAGGACACTAATGACAGGGGCCTGCTTTCACATATGGCAGCGTTTGCTGCAGGGAACCACTACTCTCGTCCTCATGGATATCCACCACCACCGCCATGTGCCGGAGCTGGATATGTTGCTCCGGTAGGGTACCCTCCGGCTGGGTATCCCCCTCCCGGCGGATATCCTCCGGCTGGCTATCCTTATCACGGCGGATGCCCTCCCGCTGGCTATCCTGGTCATCATCACTACCCTGGTATTATCACATTCTAGTGTTTGGTTTGATGACTTCGTTACTTGATATTTTCTTCTTATTGATTAAAAGCGAAAATCACTTTTTATCCCTAAATTTTAAAACATTTCTTATTTTAGTTTCAATATTGTCCTTATATTTTAAAATTTTACACAGTTTTAATCAATACTCTATTATTTTTTTTTGTTAATTTTCTATTAATTAAATTAATAAAGTATCACTAATTTTTCGTCACTATTAAAATTATTTTAAAATCGTCATAATATTTATAAATTAATGAATAAAAAAGTCCAATACTAAGAACTAAAAATAAGTATTTATTAGTGAAAACTAGGGGTCAAAGTATAAAATCTTAAAATGTAAATAAAATTAAACTCAAAATTAAATGGCAAGTAGCATTTTAGGACATATGGACTAAATTTAAAACTAAATATTTTGAAAAGAAACTATAATTTCAAAAATCATTTTTCCTTTTATTTAATATGAGTTTGAACACTATCCTTGGCCACTAGAGTTTTTGAGATTTAAAATGAAGAACAACCCCAATTTAAAAAATATATTTAAAAAACTTAAAGAGAATAGAATTTTATAATTTGAAGATTCGAGTGGATGTTTGGAATAAGAATCCATAACAGTTTAATCAATATGGAGAAAAAAAAGTGTTGTTGCTAACTAGTTTATTAGATATCGCACTTGCATTTGTTTGTTGATGATTTGTTGTTTCCAGGCCATGGACACGGACACGGACACGGCATGGGGGGGTTGTTGGCTGGCGGAGCAGCTGCCGCCGCCGCCGCTTACGGTGCTCACCATGTTGTTCATGCACACCCATTTGGCTATGGTTACGGAAGGTTCAAACATGGGAAATTTGGGAAGCGTTGGAAGCATGGAGGTAAGTTCATGAAATTCAAGAAATGGAAGTGATCAAATTGCTACCTATCTATGTTGGATATATATCGTTGTGTGAGTTTTGAGTCTAAACCTAGAAAACTGAATAATGGTATCTTATTGCTTGTACTTTGGTTGTGATATTGGCTTCTTATGTAAACAATGCGATCTTTTTTTTTTTT

mRNA sequence

AAAATGACGTACTGAATTGGACGCGTCCAAGCAACGCCAAGGCGGTCGATACTCTTTGATGGTATAAACATAAAGGGGGAGGAATAAGCGTCAAAGTTCAAATCAATCTCTGTTTTGTACGTCTCTGTCTCTCCTAATCGCCATTTTCACGGAGCACACCAAAATCTCTCTTGCATCTCTGTTCATAGTTTGGTTACTGCTCTCGGAATCTTAAAGAAATATGGGAGGTGGGAAGGACAAGGACACTAATGACAGGGGCCTGCTTTCACATATGGCAGCGTTTGCTGCAGGGAACCACTACTCTCGTCCTCATGGATATCCACCACCACCGCCATGTGCCGGAGCTGGATATGTTGCTCCGGTAGGGTACCCTCCGGCTGGGTATCCCCCTCCCGGCGGATATCCTCCGGCTGGCTATCCTTATCACGGCGGATGCCCTCCCGCTGGCTATCCTGGTCATCATCACTACCCTGGCCATGGACACGGACACGGACACGGCATGGGGGGGTTGTTGGCTGGCGGAGCAGCTGCCGCCGCCGCCGCTTACGGTGCTCACCATGTTGTTCATGCACACCCATTTGGCTATGGTTACGGAAGGTTCAAACATGGGAAATTTGGGAAGCGTTGGAAGCATGGAGGTAAGTTCATGAAATTCAAGAAATGGAAGTGATCAAATTGCTACCTATCTATGTTGGATATATATCGTTGTGTGAGTTTTGAGTCTAAACCTAGAAAACTGAATAATGGTATCTTATTGCTTGTACTTTGGTTGTGATATTGGCTTCTTATGTAAACAATGCGATCTTTTTTTTTTTT

Coding sequence (CDS)

ATGGGAGGTGGGAAGGACAAGGACACTAATGACAGGGGCCTGCTTTCACATATGGCAGCGTTTGCTGCAGGGAACCACTACTCTCGTCCTCATGGATATCCACCACCACCGCCATGTGCCGGAGCTGGATATGTTGCTCCGGTAGGGTACCCTCCGGCTGGGTATCCCCCTCCCGGCGGATATCCTCCGGCTGGCTATCCTTATCACGGCGGATGCCCTCCCGCTGGCTATCCTGGTCATCATCACTACCCTGGCCATGGACACGGACACGGACACGGCATGGGGGGGTTGTTGGCTGGCGGAGCAGCTGCCGCCGCCGCCGCTTACGGTGCTCACCATGTTGTTCATGCACACCCATTTGGCTATGGTTACGGAAGGTTCAAACATGGGAAATTTGGGAAGCGTTGGAAGCATGGAGGTAAGTTCATGAAATTCAAGAAATGGAAGTGA

Protein sequence

MGGGKDKDTNDRGLLSHMAAFAAGNHYSRPHGYPPPPPCAGAGYVAPVGYPPAGYPPPGGYPPAGYPYHGGCPPAGYPGHHHYPGHGHGHGHGMGGLLAGGAAAAAAAYGAHHVVHAHPFGYGYGRFKHGKFGKRWKHGGKFMKFKKWK
Homology
[Close]
BLAST of Carg06366 vs. NCBI nr
Match: XP_022974188.1 (glycine-rich protein A3-like isoform X1 [Cucurbita maxima] >XP_022974189.1 glycine-rich protein A3-like isoform X1 [Cucurbita maxima] >XP_022974190.1 glycine-rich protein A3-like isoform X2 [Cucurbita maxima] >XP_022974191.1 glycine-rich protein A3-like isoform X2 [Cucurbita maxima] >XP_022974193.1 glycine-rich protein A3-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 115.9 bits (289), Expect = 1.2e-22
Identity = 148/149 (99.33%), Postives = 148/149 (99.33%), Query Frame = 0 

Query: 1   MGGGKDKDTNDRGLLSHMAAFAAGNHYSRPHGYPPPPPCAGAXXXXXXXXXXXXXXXXXX 60
           MGGGKDKDTNDRGLLSHMAAFAAGNHYSRPHGYPPPPPCAGAXXXXXXXXXXXXXXXXXX
Sbjct: 1   MGGGKDKDTNDRGLLSHMAAFAAGNHYSRPHGYPPPPPCAGAXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXRFKHGKFGKRWKHGGKFMKFKKWK 150
           XXXXXRFKHGKFGKRWKHGGKFMKFKKWK
Sbjct: 121 XXXXXRFKHGKFGKRWKHGGKFMKFKKWK 149

[Close]
BLAST of Carg06366 vs. NCBI nr
Match: XP_022950701.1 (glycine-rich protein A3 [Cucurbita moschata] >XP_022950709.1 glycine-rich protein A3 [Cucurbita moschata])

HSP 1 Score: 109.0 bits (271), Expect = 1.4e-20
Identity = 138/149 (92.62%), Postives = 138/149 (92.62%), Query Frame = 0 

Query: 1   MGGGKDKDTNDRGLLSHMAAFAAGNHYSRPHGYPPPPPCAGAXXXXXXXXXXXXXXXXXX 60
           MGGGKDKDTNDRGLLSHMAAFAAGNHYSRPHGYPPPPPCAGA  XXXXXXXXXXXXXXXX
Sbjct: 1   MGGGKDKDTNDRGLLSHMAAFAAGNHYSRPHGYPPPPPCAGA--XXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHPF 120

Query: 121 XXXXXRFKHGKFGKRWKHGGKFMKFKKWK 150
                RFKHGKFGKRWKHGGKFMKFKKWK
Sbjct: 121 GYGYGRFKHGKFGKRWKHGGKFMKFKKWK 147

[Close]
BLAST of Carg06366 vs. NCBI nr
Match: XP_023538813.1 (glycine-rich protein A3 [Cucurbita pepo subsp. pepo] >XP_023538814.1 glycine-rich protein A3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 109.0 bits (271), Expect = 1.4e-20
Identity = 145/149 (97.32%), Postives = 145/149 (97.32%), Query Frame = 0 

Query: 1   MGGGKDKDTNDRGLLSHMAAFAAGNHYSRPHGYPPPPPCAGAXXXXXXXXXXXXXXXXXX 60
           MGGGKDKDTNDRGLLSHMAAFAAGNHYSRPHGYPPPPPCAGA  XXXXXXXXXXXXXXXX
Sbjct: 1   MGGGKDKDTNDRGLLSHMAAFAAGNHYSRPHGYPPPPPCAGA--XXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXRFKHGKFGKRWKHGGKFMKFKKWK 150
           XXXX RFKHGKFGKRWKHGGKFMKFKKWK
Sbjct: 121 XXXXGRFKHGKFGKRWKHGGKFMKFKKWK 147

[Close]
BLAST of Carg06366 vs. NCBI nr
Match: XP_022924320.1 (glycine-rich protein A3-like [Cucurbita moschata] >XP_022924321.1 glycine-rich protein A3-like [Cucurbita moschata])

HSP 1 Score: 70.5 bits (171), Expect = 5.6e-09
Identity = 30/42 (71.43%), Postives = 36/42 (85.71%), Query Frame = 0 

Query: 1  MGGGKDKDTNDRGLLSHMAAFAAGNHYSRPHGYPPPPPCAGA 43
          MGGGK++++ D+GL S MA+FAAG HYS PHGYPPPPP AGA
Sbjct: 1  MGGGKEEESKDKGLFSSMASFAAGQHYSHPHGYPPPPPYAGA 42

[Close]
BLAST of Carg06366 vs. NCBI nr
Match: XP_022980434.1 (glycine-rich protein A3-like [Cucurbita maxima] >XP_022980435.1 glycine-rich protein A3-like [Cucurbita maxima])

HSP 1 Score: 70.5 bits (171), Expect = 5.6e-09
Identity = 30/42 (71.43%), Postives = 36/42 (85.71%), Query Frame = 0 

Query: 1  MGGGKDKDTNDRGLLSHMAAFAAGNHYSRPHGYPPPPPCAGA 43
          MGGGK++++ D+GL S MA+FAAG HYS PHGYPPPPP AGA
Sbjct: 1  MGGGKEEESKDKGLFSSMASFAAGQHYSHPHGYPPPPPYAGA 42

The following BLAST results are available for this feature:
BLAST of Carg06366 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022974188.11.2e-2299.33glycine-rich protein A3-like isoform X1 [Cucurbita maxima] >XP_022974189.1 glyci... [more]
XP_022950701.11.4e-2092.62glycine-rich protein A3 [Cucurbita moschata] >XP_022950709.1 glycine-rich protei... [more]
XP_023538813.11.4e-2097.32glycine-rich protein A3 [Cucurbita pepo subsp. pepo] >XP_023538814.1 glycine-ric... [more]
XP_022924320.15.6e-0971.43glycine-rich protein A3-like [Cucurbita moschata] >XP_022924321.1 glycine-rich p... [more]
XP_022980434.15.6e-0971.43glycine-rich protein A3-like [Cucurbita maxima] >XP_022980435.1 glycine-rich pro... [more]
BLAST of Carg06366 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg06366 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg06366 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06366-RACarg06366-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31248FAMILY NOT NAMEDcoord: 1..149
NoneNo IPR availablePANTHERPTHR31248:SF3SUBFAMILY NOT NAMEDcoord: 1..149

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg06366Cla021330Watermelon (97103) v1carwmB0961
Carg06366Csa3G126870Cucumber (Chinese Long) v2carcuB0975
Carg06366ClCG05G002490Watermelon (Charleston Gray)carwcgB0935
Carg06366CSPI03G09780Wild cucumber (PI 183967)carcpiB0998
Carg06366Cucsa.257410Cucumber (Gy14) v1carcgyB1077
Carg06366CmaCh14G019630Cucurbita maxima (Rimu)carcmaB1320
Carg06366CmaCh06G011510Cucurbita maxima (Rimu)carcmaB1325
Carg06366CmoCh06G011800Cucurbita moschata (Rifu)carcmoB1288
Carg06366Lsi05G019350Bottle gourd (USVL1VR-Ls)carlsiB878
Carg06366Cp4.1LG08g01960Cucurbita pepo (Zucchini)carcpeB1333
Carg06366CsGy3G009870Cucumber (Gy14) v2carcgybB0948
Carg06366MELO3C006213.2Melon (DHL92) v3.6.1carmedB0947
Carg06366CsaV3_3G009940Cucumber (Chinese Long) v3carcucB1003
Carg06366Cla97C05G082990Watermelon (97103) v2carwmbB1008
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg06366Carg14853Silver-seed gourdcarcarB549
The following block(s) are covering this gene:
GeneOrganismBlock
Carg06366Wax gourdcarwgoB1113
Carg06366Wax gourdcarwgoB1118
Carg06366Silver-seed gourdcarcarB266
Carg06366Cucumber (Gy14) v2carcgybB0949
Carg06366Cucumber (Gy14) v1carcgyB1079
Carg06366Cucurbita maxima (Rimu)carcmaB1319
Carg06366Cucurbita maxima (Rimu)carcmaB1321
Carg06366Cucurbita moschata (Rifu)carcmoB1284
Carg06366Cucurbita moschata (Rifu)carcmoB1285
Carg06366Cucurbita pepo (Zucchini)carcpeB1328
Carg06366Cucurbita pepo (Zucchini)carcpeB1331
Carg06366Wild cucumber (PI 183967)carcpiB0999
Carg06366Cucumber (Chinese Long) v2carcuB0976
Carg06366Cucumber (Chinese Long) v3carcucB1004
Carg06366Bottle gourd (USVL1VR-Ls)carlsiB875
Carg06366Melon (DHL92) v3.5.1carmeB0938
Carg06366Melon (DHL92) v3.5.1carmeB0941
Carg06366Melon (DHL92) v3.6.1carmedB0944
Carg06366Watermelon (Charleston Gray)carwcgB0937
Carg06366Watermelon (97103) v1carwmB0963
Carg06366Watermelon (97103) v2carwmbB1010