Carg14853 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg14853
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	glycine-rich protein A3
Location	Cucurbita_argyrosperma_scaffold_079 : 317696 .. 319341 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTCATTTATCTTGATTGTGATCATATTCTCCTGAATTTCACTCTGATGATTTTCTTCTTCTTTCTGTTCGTTTTTCGCTCTCTCCGGAACTTTTTGGACTGCGTTCTGGAAATCGATTGAATGTGTGGTTAAAGATCATTTCATGTTCGAGTTTGTCGGTGTTCTTCAGGTCCTCTTGCTTTTTATCGCTTGTCCTCACGATAGATAACAACATTAGAAAAGAGTTGTTGATCCATTCTGTTGCGAATGATTTTGCTAGATAATCGGTTGAAGCAACGGGTTGAGTTATCAATTCCTTTGTTTGATTGTTCTTGGTGTAGATATGTGATTTTAGCTACGAGTTAATCTTATTCGATCCAATGTAATTTTAGTCAGTCTTGAATTTTGTTTGGTATCAACAGAATCAAATGGAGTCTTCGCATATCAATTCCTTTGTTTGATTGTTCTTGAATTTTGCTTCAGTTTTTCATTTGTGTTCATTCTTTCAGTGATATTTATGGCCTTAGAAGTTATGTTTTCCTCAATCTTCTAAAGATTAACAATCTTTTGTTTCCATTGTCGATTCATAGTTTGGTTTCTTACTCTTGGAAACTTGAAGAAAAATGGGAGGCGGGAAGGAAGAGGAAAGTAAAGACAAGGGCCTGTTTTCAAGTATGGCGTCGTTTGCTGCAGGGCAGCACTATTCGCATCCTCATGGATATCCACCACCACCACCGTACGCAGGAGCTGGATATCCCCCTCCGGGAGGGTACCCTCCGGCTGCGTATCCGCCTCCTGGCGGATATCCTCCGGCTGCGTATCCACCTCCTGGCGGATATCCTCCGGCTGCGTATCCACCTCCTGGCGGATATCCACCGGCTGGCTATCCTCCTCACGGTGCATACCCTCCCGCTGGCTATCCTGCCCCCCATCATTACCCTGGTATTATCTCATTCTACCGTTTGTGTTGATGACTTTGGTAATTAAAATTCTCTTTTAGTTGATTTAATATGAATTTCAATGCTATATTTTCTAAAACCACCCTATAATTCAGGACTAAAAATGTACTTGAATTGAAACTTTATACACTAAAAATTCTCCCTAATTTGGATCCTTTAATTTTTTAGAATTTTAAATTTTTTTTGCGTATGAAGCTAGGGGGTTGTTGGTTATCGTCATGATTTTTCGTTACAGGCCACGGAGGCCATGGACTCGGCATGGGGGGGTTGTTGGCTGGTGGTGCAGCTGCTGCAGCCGCTGCTTACGGCGCTCATCATCTTGCTCATGCACGCCCATTTGGGTTTGGTCACGGAAAATTCAAACATGGGAAATTTGGCAAGCGTTGGAAGCATGGAGTAGGCAAGTTCAAGAAATGGAAGTGATAAAATTGCTGGAAGCTTATTATATGTGAGTTCTTAGTCCAAAACCTTTTTAAAAAATAATAATAAATATTGTATTTTAATGCTTGTGTTTATTTCATTACATTGGGGCTTCTTTTTGTAAAGATTTCAACAATTTTATTATTATATATAATTTTATCTTTATTTCCCTGTTGATAGATGTGATAATTTGTGATTTTAAAACATTTAAAATAATTCAAAATTAATTTAATGTTTAATTTTAGATAATATTAAACGCAATTTGAACAATTCAAAATAATAAACT

mRNA sequence

TATTCATTTATCTTGATTGTGATCATATTCTCCTGAATTTCACTCTGATGATTTTCTTCTTCTTTCTGTTCGTTTTTCGCTCTCTCCGGAACTTTTTGGACTGCGTTCTGGAAATCGATTGAATGTGTGGTTAAAGATCATTTCATGTTCGAGTTTGTCGGTGTTCTTCAGGTCCTCTTGCTTTTTATCGCTTGTCCTCACGATAGATAACAACATTAGAAAAGAGTTGTTGATCCATTCTGTTGCGAATGATTTTGCTAGATAATCGGTTGAAGCAACGGGTTGAGTTATCAATTCCTTTGTTTGATTGTTCTTGGTGTAGATATGTGATTTTAGCTACGAGTTAATCTTATTCGATCCAATGTAATTTTAGTCAGTCTTGAATTTTGTTTGGTATCAACAGAATCAAATGGAGTCTTCGCATATCAATTCCTTTGTTTGATTGTTCTTGAATTTTGCTTCAGTTTTTCATTTGTGTTCATTCTTTCAGTGATATTTATGGCCTTAGAAGTTATGTTTTCCTCAATCTTCTAAAGATTAACAATCTTTTGTTTCCATTGTCGATTCATAGTTTGGTTTCTTACTCTTGGAAACTTGAAGAAAAATGGGAGGCGGGAAGGAAGAGGAAAGTAAAGACAAGGGCCTGTTTTCAAGTATGGCGTCGTTTGCTGCAGGGCAGCACTATTCGCATCCTCATGGATATCCACCACCACCACCGTACGCAGGAGCTGGATATCCCCCTCCGGGAGGGTACCCTCCGGCTGCGTATCCGCCTCCTGGCGGATATCCTCCGGCTGCGTATCCACCTCCTGGCGGATATCCTCCGGCTGCGTATCCACCTCCTGGCGGATATCCACCGGCTGGCTATCCTCCTCACGGTGCATACCCTCCCGCTGGCTATCCTGCCCCCCATCATTACCCTGGCCACGGAGGCCATGGACTCGGCATGGGGGGGTTGTTGGCTGGTGGTGCAGCTGCTGCAGCCGCTGCTTACGGCGCTCATCATCTTGCTCATGCACGCCCATTTGGGTTTGGTCACGGAAAATTCAAACATGGGAAATTTGGCAAGCGTTGGAAGCATGGAGTAGGCAAGTTCAAGAAATGGAAGTGATAAAATTGCTGGAAGCTTATTATATGTGAGTTCTTAGTCCAAAACCTTTTTAAAAAATAATAATAAATATTGTATTTTAATGCTTGTGTTTATTTCATTACATTGGGGCTTCTTTTTGTAAAGATTTCAACAATTTTATTATTATATATAATTTTATCTTTATTTCCCTGTTGATAGATGTGATAATTTGTGATTTTAAAACATTTAAAATAATTCAAAATTAATTTAATGTTTAATTTTAGATAATATTAAACGCAATTTGAACAATTCAAAATAATAAACT

Coding sequence (CDS)

ATGGGAGGCGGGAAGGAAGAGGAAAGTAAAGACAAGGGCCTGTTTTCAAGTATGGCGTCGTTTGCTGCAGGGCAGCACTATTCGCATCCTCATGGATATCCACCACCACCACCGTACGCAGGAGCTGGATATCCCCCTCCGGGAGGGTACCCTCCGGCTGCGTATCCGCCTCCTGGCGGATATCCTCCGGCTGCGTATCCACCTCCTGGCGGATATCCTCCGGCTGCGTATCCACCTCCTGGCGGATATCCACCGGCTGGCTATCCTCCTCACGGTGCATACCCTCCCGCTGGCTATCCTGCCCCCCATCATTACCCTGGCCACGGAGGCCATGGACTCGGCATGGGGGGGTTGTTGGCTGGTGGTGCAGCTGCTGCAGCCGCTGCTTACGGCGCTCATCATCTTGCTCATGCACGCCCATTTGGGTTTGGTCACGGAAAATTCAAACATGGGAAATTTGGCAAGCGTTGGAAGCATGGAGTAGGCAAGTTCAAGAAATGGAAGTGA

Protein sequence

MGGGKEEESKDKGLFSSMASFAAGQHYSHPHGYPPPPPYAGAGYPPPGGYPPAAYPPPGGYPPAAYPPPGGYPPAAYPPPGGYPPAGYPPHGAYPPAGYPAPHHYPGHGGHGLGMGGLLAGGAAAAAAAYGAHHLAHARPFGFGHGKFKHGKFGKRWKHGVGKFKKWK

Homology

[Close]

BLAST of Carg14853 vs. NCBI nr
Match: XP_022924320.1 (glycine-rich protein A3-like [Cucurbita moschata] >XP_022924321.1 glycine-rich protein A3-like [Cucurbita moschata])

HSP 1 Score: 155.2 bits (391), Expect = 1.9e-34
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0


Query: 1   MGGGKEEESKDKGLFSSMASFAAGQHYSHPHGYPPPPPYAGAXXXXXXXXXXXXXXXXXX 60
           MGGGKEEESKDKGLFSSMASFAAGQHYSHPHGYPPPPPYAGAXXXXXXXXXXXXXXXXXX
Sbjct: 1   MGGGKEEESKDKGLFSSMASFAAGQHYSHPHGYPPPPPYAGAXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHGLGMGGLXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHGLGMGGLXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHGLGMGGLXX 120

Query: 121 XXXXXXXXXXXXHHLAHARPFGFGHGKFKHGKFGKRWKHGVGKFKKWK 169
           XXXXXXXXXXXXHHLAHARPFGFGHGKFKHGKFGKRWKHGVGKFKKWK
Sbjct: 121 XXXXXXXXXXXXHHLAHARPFGFGHGKFKHGKFGKRWKHGVGKFKKWK 168

[Close]

BLAST of Carg14853 vs. NCBI nr
Match: XP_022980434.1 (glycine-rich protein A3-like [Cucurbita maxima] >XP_022980435.1 glycine-rich protein A3-like [Cucurbita maxima])

HSP 1 Score: 152.5 bits (384), Expect = 1.3e-33
Identity = 167/168 (99.40%), Postives = 167/168 (99.40%), Query Frame = 0


Query: 1   MGGGKEEESKDKGLFSSMASFAAGQHYSHPHGYPPPPPYAGAXXXXXXXXXXXXXXXXXX 60
           MGGGKEEESKDKGLFSSMASFAAGQHYSHPHGYPPPPPYAGAXXXXXXXXXXXXXXXXXX
Sbjct: 1   MGGGKEEESKDKGLFSSMASFAAGQHYSHPHGYPPPPPYAGAXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHGLGMGGLXX 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHGLGMGGLXX
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHGLGMGGLXX 120

Query: 121 XXXXXXXXXXXXHHLAHARPFGFGHGKFKHGKFGKRWKHGVGKFKKWK 169
           XXXXXXXXXXXXHHLAHARPFGFGHGKFKHGKFGKRWKHG GKFKKWK
Sbjct: 121 XXXXXXXXXXXXHHLAHARPFGFGHGKFKHGKFGKRWKHGGGKFKKWK 168

[Close]

BLAST of Carg14853 vs. NCBI nr
Match: XP_023527127.1 (glycine-rich protein A3-like [Cucurbita pepo subsp. pepo] >XP_023527129.1 glycine-rich protein A3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 157/174 (90.23%), Postives = 157/174 (90.23%), Query Frame = 0


Query: 1   MGGGKEEESKDKGLFSSMASFAAGQHYSHPHGYPPPPPYAGAXXXXXXXXXXXXXXXXXX 60
           MGGGKEEESKDKGLFSSMASFAAGQHYSHPHGYPPPPPYAGAXXXXXXXXXXXXXXXXXX
Sbjct: 1   MGGGKEEESKDKGLFSSMASFAAGQHYSHPHGYPPPPPYAGAXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHGL------G 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHGL       
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHGLXXXXXXX 120

Query: 121 MGGLXXXXXXXXXXXXXXHHLAHARPFGFGHGKFKHGKFGKRWKHGVGKFKKWK 169
               XXXXXXXXXXXXXX     ARPFGFGHGKFKHGKFGKRWKHG GKFKKWK
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXARPFGFGHGKFKHGKFGKRWKHGGGKFKKWK 174

[Close]

BLAST of Carg14853 vs. NCBI nr
Match: XP_022950701.1 (glycine-rich protein A3 [Cucurbita moschata] >XP_022950709.1 glycine-rich protein A3 [Cucurbita moschata])

HSP 1 Score: 72.8 bits (177), Expect = 1.3e-09
Identity = 112/170 (65.88%), Postives = 121/170 (71.18%), Query Frame = 0


Query: 1   MGGGKEEESKDKGLFSSMASFAAGQHYSHPHGYPPPPPYAGAXXXXXXXXXXXXXXXXXX 60
           MGGGK++++ D+GL S MA+FAAG HYS PHGYPPPPP AGA                  
Sbjct: 1   MGGGKDKDTNDRGLLSHMAAFAAGNHYSRPHGYPPPPPCAGA------------------ 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHGLGMGGLXX 120
                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         XX
Sbjct: 61  -----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXHHLAHARPFGFGHGKFKHGKFGKRWKHG--VGKFKKWK 169
           XXXXXXXXXXXX       PFG+G+G+FKHGKFGKRWKHG    KFKKWK
Sbjct: 121 XXXXXXXXXXXXXXXXXXHPFGYGYGRFKHGKFGKRWKHGGKFMKFKKWK 147

[Close]

BLAST of Carg14853 vs. NCBI nr
Match: XP_022974188.1 (glycine-rich protein A3-like isoform X1 [Cucurbita maxima] >XP_022974189.1 glycine-rich protein A3-like isoform X1 [Cucurbita maxima] >XP_022974190.1 glycine-rich protein A3-like isoform X2 [Cucurbita maxima] >XP_022974191.1 glycine-rich protein A3-like isoform X2 [Cucurbita maxima] >XP_022974193.1 glycine-rich protein A3-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 68.6 bits (166), Expect = 2.4e-08
Identity = 30/42 (71.43%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 1  MGGGKEEESKDKGLFSSMASFAAGQHYSHPHGYPPPPPYAGA 43
          MGGGK++++ D+GL S MA+FAAG HYS PHGYPPPPP AGA
Sbjct: 1  MGGGKDKDTNDRGLLSHMAAFAAGNHYSRPHGYPPPPPCAGA 42

[Close]

BLAST of Carg14853 vs. TrEMBL
Match: tr|A0A1S3AWG9|A0A1S3AWG9_CUCME (glycine-rich protein A3 OS=Cucumis melo OX=3656 GN=LOC103483379 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.6e-08
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 136 AHARPFGFGHGKFKHGKFGKRWKHG--VGKFKKWK 169
           AHARPFGFGHGKFKHGKFGKRWKHG   G+FKKWK
Sbjct: 119 AHARPFGFGHGKFKHGKFGKRWKHGGKFGRFKKWK 153

The following BLAST results are available for this feature:

BLAST of Carg14853 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022924320.1	1.9e-34	100.00	glycine-rich protein A3-like [Cucurbita moschata] >XP_022924321.1 glycine-rich p...	[more]
XP_022980434.1	1.3e-33	99.40	glycine-rich protein A3-like [Cucurbita maxima] >XP_022980435.1 glycine-rich pro...	[more]
XP_023527127.1	1.2e-23	90.23	glycine-rich protein A3-like [Cucurbita pepo subsp. pepo] >XP_023527129.1 glycin...	[more]
XP_022950701.1	1.3e-09	65.88	glycine-rich protein A3 [Cucurbita moschata] >XP_022950709.1 glycine-rich protei...	[more]
XP_022974188.1	2.4e-08	71.43	glycine-rich protein A3-like isoform X1 [Cucurbita maxima] >XP_022974189.1 glyci...	[more]

BLAST of Carg14853 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg14853 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg14853 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AWG9\|A0A1S3AWG9_CUCME	4.6e-08	88.57	glycine-rich protein A3 OS=Cucumis melo OX=3656 GN=LOC103483379 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14853-RA	Carg14853-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31248:SF3	SUBFAMILY NOT NAMED	coord: 4..167
None	No IPR available	PANTHER	PTHR31248	FAMILY NOT NAMED	coord: 4..167

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg14853	Cla021330	Watermelon (97103) v1	carwmB0617
Carg14853	ClCG05G002490	Watermelon (Charleston Gray)	carwcgB0602
Carg14853	CmaCh14G019630	Cucurbita maxima (Rimu)	carcmaB0874
Carg14853	Cp4.1LG03g17250	Cucurbita pepo (Zucchini)	carcpeB0884
Carg14853	MELO3C006213.2	Melon (DHL92) v3.6.1	carmedB0629

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg14853	Carg06366	Silver-seed gourd	carcarB549

The following block(s) are covering this gene:


Gene	Organism	Block
Carg14853	Silver-seed gourd	carcarB261
Carg14853	Silver-seed gourd	carcarB550
Carg14853	Cucumber (Gy14) v2	carcgybB0617
Carg14853	Cucumber (Gy14) v2	carcgybB0619
Carg14853	Cucumber (Gy14) v1	carcgyB0693
Carg14853	Cucumber (Gy14) v1	carcgyB0695
Carg14853	Cucurbita maxima (Rimu)	carcmaB0876
Carg14853	Cucurbita maxima (Rimu)	carcmaB0877
Carg14853	Cucurbita maxima (Rimu)	carcmaB0880
Carg14853	Cucurbita moschata (Rifu)	carcmoB0850
Carg14853	Cucurbita moschata (Rifu)	carcmoB0851
Carg14853	Cucurbita moschata (Rifu)	carcmoB0852
Carg14853	Cucurbita moschata (Rifu)	carcmoB0854
Carg14853	Cucurbita pepo (Zucchini)	carcpeB0881
Carg14853	Cucurbita pepo (Zucchini)	carcpeB0882
Carg14853	Cucurbita pepo (Zucchini)	carcpeB0885
Carg14853	Wild cucumber (PI 183967)	carcpiB0651
Carg14853	Wild cucumber (PI 183967)	carcpiB0653
Carg14853	Cucumber (Chinese Long) v2	carcuB0644
Carg14853	Cucumber (Chinese Long) v2	carcuB0645
Carg14853	Cucumber (Chinese Long) v3	carcucB0652
Carg14853	Cucumber (Chinese Long) v3	carcucB0654
Carg14853	Bottle gourd (USVL1VR-Ls)	carlsiB564
Carg14853	Bottle gourd (USVL1VR-Ls)	carlsiB565
Carg14853	Melon (DHL92) v3.5.1	carmeB0621
Carg14853	Melon (DHL92) v3.5.1	carmeB0622
Carg14853	Melon (DHL92) v3.6.1	carmedB0628
Carg14853	Watermelon (Charleston Gray)	carwcgB0603
Carg14853	Watermelon (97103) v1	carwmB0619
Carg14853	Watermelon (97103) v2	carwmbB0647
Carg14853	Watermelon (97103) v2	carwmbB0648
Carg14853	Wax gourd	carwgoB0736
Carg14853	Wax gourd	carwgoB0737