Cla97C05G082990 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G082990
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	glycine-rich protein A3
Location	Cla97Chr05 : 2254058 .. 2255000 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGTGGGAAGGAAAATGACAGCAGTGACAAAGACAAAGGCCTGTTTTCAAATATGGCGGCGTTTGCTGCGGGGCACCACTATCCTCATTCTCATGGATATCCACCACCACCATACGCTGGAGGATATCCCCCCCCGGGAGGGTACCCTCCGGCTGGGTATCCCCCTTCCGGTGGATATCCTCCGGCTGGCTATCCTCCTTACGGTGGACACCCTCATACAGCCTATCCATATCACGGCGGATACCCCCCTGCTGGCTATCCTGGCCCCCATCATTACCCTGGTATTATCTCATTCTACTGTTTGCTTTGATGACTTTGTTACTTGATAACACCTTTTGTTGATTGAATATGGGCGCTAAATGGTGAAGAGATTTTGGGCAAAGAAGGAAGATGGGACCAGCCTCCTCTTAAATCAGATTAGATTAAAACATATTTAAAATTTTTAGAATTAGAATCTAAACTTTAGATACTTCACTCGTTCAAGCTCATTTATTATCTTTAAAAACATGGAATCCTTTATTCCCATTTGAAATGGGCGTTGCGTTGGGGCGTGGAAGGCATCTGAAATTTGAGTGGATCTGTGCTATAAGCATAATACAGGACTTTCAAGAGTTCAATTATTAAAAAGAAAACAAGAAGTCTTATCGCCAACTATTTTATGACATTGGATCGTGACGGGTAGTTGTTATTGACAAAATTCTAACCATGGATCATCGTCATGGAGTTTTTGTTTTTTGTTTTCAGGCCATGGACACGGACACGGACACGGTATGGGGGGTATGGGGGGATTGTTGGCTGGTGCAGCCGCTGCTTACGGCGCTCATCATCTTGTTCATGCACGCCCATTTGGCTACGGTCACGGAAAGTTCAAACATGGGAAATTTGGCAAGCGTTGGAAGCATGGAGGCAAGTTCATGAGATTCAAGAAGTGGAAGTGA

mRNA sequence

ATGGGAGGTGGGAAGGAAAATGACAGCAGTGACAAAGACAAAGGCCTGTTTTCAAATATGGCGGCGTTTGCTGCGGGGCACCACTATCCTCATTCTCATGGATATCCACCACCACCATACGCTGGAGGATATCCCCCCCCGGGAGGGTACCCTCCGGCTGGGTATCCCCCTTCCGGTGGATATCCTCCGGCTGGCTATCCTCCTTACGGTGGACACCCTCATACAGCCTATCCATATCACGGCGGATACCCCCCTGCTGGCTATCCTGGCCCCCATCATTACCCTGGCCATGGACACGGACACGGACACGGTATGGGGGGTATGGGGGGATTGTTGGCTGGTGCAGCCGCTGCTTACGGCGCTCATCATCTTGTTCATGCACGCCCATTTGGCTACGGTCACGGAAAGTTCAAACATGGGAAATTTGGCAAGCGTTGGAAGCATGGAGGCAAGTTCATGAGATTCAAGAAGTGGAAGTGA

Coding sequence (CDS)

ATGGGAGGTGGGAAGGAAAATGACAGCAGTGACAAAGACAAAGGCCTGTTTTCAAATATGGCGGCGTTTGCTGCGGGGCACCACTATCCTCATTCTCATGGATATCCACCACCACCATACGCTGGAGGATATCCCCCCCCGGGAGGGTACCCTCCGGCTGGGTATCCCCCTTCCGGTGGATATCCTCCGGCTGGCTATCCTCCTTACGGTGGACACCCTCATACAGCCTATCCATATCACGGCGGATACCCCCCTGCTGGCTATCCTGGCCCCCATCATTACCCTGGCCATGGACACGGACACGGACACGGTATGGGGGGTATGGGGGGATTGTTGGCTGGTGCAGCCGCTGCTTACGGCGCTCATCATCTTGTTCATGCACGCCCATTTGGCTACGGTCACGGAAAGTTCAAACATGGGAAATTTGGCAAGCGTTGGAAGCATGGAGGCAAGTTCATGAGATTCAAGAAGTGGAAGTGA

Protein sequence

MGGGKENDSSDKDKGLFSNMAAFAAGHHYPHSHGYPPPPYAGGYPPPGGYPPAGYPPSGGYPPAGYPPYGGHPHTAYPYHGGYPPAGYPGPHHYPGHGHGHGHGMGGMGGLLAGAAAAYGAHHLVHARPFGYGHGKFKHGKFGKRWKHGGKFMRFKKWK

Homology

[Close]

BLAST of Cla97C05G082990 vs. NCBI nr
Match: XP_022980434.1 (glycine-rich protein A3-like [Cucurbita maxima] >XP_022980435.1 glycine-rich protein A3-like [Cucurbita maxima])

HSP 1 Score: 82.4 bits (202), Expect = 1.5e-12
Identity = 123/172 (71.51%), Postives = 128/172 (74.42%), Query Frame = 0


Query: 1   MGGGKENDSSDKDKGLFSNMAAFAAGHHYPHSHGYPPXXXXXXXXXXXGYPPXXXXXXXX 60
           MGGGKE +S  KDKGLFS+MA+FAAG HY H HGYPP       XXXX    XXXXXXXX
Sbjct: 1   MGGGKEEES--KDKGLFSSMASFAAGQHYSHPHGYPPPPPYAGAXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLAGAAAA-- 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   G      
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHGLGMGGL 120

Query: 121 -----------YGAHHLVHARPFGYGHGKFKHGKFGKRWKHGGKFMRFKKWK 160
                         HHL HARPFG+GHGKFKHGKFGKRWKHGG   +FKKWK
Sbjct: 121 XXXXXXXXXXXXXXHHLAHARPFGFGHGKFKHGKFGKRWKHGGG--KFKKWK 168

[Close]

BLAST of Cla97C05G082990 vs. NCBI nr
Match: XP_022924320.1 (glycine-rich protein A3-like [Cucurbita moschata] >XP_022924321.1 glycine-rich protein A3-like [Cucurbita moschata])

HSP 1 Score: 80.1 bits (196), Expect = 7.5e-12
Identity = 122/172 (70.93%), Postives = 127/172 (73.84%), Query Frame = 0


Query: 1   MGGGKENDSSDKDKGLFSNMAAFAAGHHYPHSHGYPPXXXXXXXXXXXGYPPXXXXXXXX 60
           MGGGKE +S  KDKGLFS+MA+FAAG HY H HGYPP       XXXX    XXXXXXXX
Sbjct: 1   MGGGKEEES--KDKGLFSSMASFAAGQHYSHPHGYPPPPPYAGAXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLAGAAAA-- 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   G      
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHGLGMGGL 120

Query: 121 -----------YGAHHLVHARPFGYGHGKFKHGKFGKRWKHGGKFMRFKKWK 160
                         HHL HARPFG+GHGKFKHGKFGKRWKHG    +FKKWK
Sbjct: 121 XXXXXXXXXXXXXXHHLAHARPFGFGHGKFKHGKFGKRWKHG--VGKFKKWK 168

[Close]

BLAST of Cla97C05G082990 vs. NCBI nr
Match: XP_008438206.1 (PREDICTED: glycine-rich protein A3 [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 1.2e-09
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 126 HARPFGYGHGKFKHGKFGKRWKHGGKFMRFKKWK 160
           HARPFG+GHGKFKHGKFGKRWKHGGKF RFKKWK
Sbjct: 120 HARPFGFGHGKFKHGKFGKRWKHGGKFGRFKKWK 153

[Close]

BLAST of Cla97C05G082990 vs. NCBI nr
Match: XP_022950701.1 (glycine-rich protein A3 [Cucurbita moschata] >XP_022950709.1 glycine-rich protein A3 [Cucurbita moschata])

HSP 1 Score: 72.8 bits (177), Expect = 1.2e-09
Identity = 110/161 (68.32%), Postives = 119/161 (73.91%), Query Frame = 0


Query: 1   MGGGKENDSSDKDKGLFSNMAAFAAGHHYPHSHGYPPXXXXXXXXXXXGYPP--XXXXXX 60
           MGGGK+ D++  D+GL S+MAAFAAG+HY   HGYPP             PP    XXXX
Sbjct: 1   MGGGKDKDTN--DRGLLSHMAAFAAGNHYSRPHGYPPP------------PPCAGAXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLAGAAAA 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 YGAHHLVHARPFGYGHGKFKHGKFGKRWKHGGKFMRFKKWK 160
                     PFGYG+G+FKHGKFGKRWKHGGKFM+FKKWK
Sbjct: 121 XXXXXXXXXHPFGYGYGRFKHGKFGKRWKHGGKFMKFKKWK 147

[Close]

BLAST of Cla97C05G082990 vs. NCBI nr
Match: XP_023527127.1 (glycine-rich protein A3-like [Cucurbita pepo subsp. pepo] >XP_023527129.1 glycine-rich protein A3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 66.6 bits (161), Expect = 8.6e-08
Identity = 119/178 (66.85%), Postives = 124/178 (69.66%), Query Frame = 0


Query: 1   MGGGKENDSSDKDKGLFSNMAAFAAGHHYPHSHGYPPXXXXXXXXXXXGYPPXXXXXXXX 60
           MGGGKE +S  KDKGLFS+MA+FAAG HY H HGYPP       XXXX    XXXXXXXX
Sbjct: 1   MGGGKEEES--KDKGLFSSMASFAAGQHYSHPHGYPPPPPYAGAXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLAG------ 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   G      
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHGLXXXXX 120

Query: 121 -------------AAAAYGAHHLVHARPFGYGHGKFKHGKFGKRWKHGGKFMRFKKWK 160
                                    ARPFG+GHGKFKHGKFGKRWKHGG   +FKKWK
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXARPFGFGHGKFKHGKFGKRWKHGGG--KFKKWK 174

[Close]

BLAST of Cla97C05G082990 vs. TrEMBL
Match: tr|A0A1S3AWG9|A0A1S3AWG9_CUCME (glycine-rich protein A3 OS=Cucumis melo OX=3656 GN=LOC103483379 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.9e-10
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 126 HARPFGYGHGKFKHGKFGKRWKHGGKFMRFKKWK 160
           HARPFG+GHGKFKHGKFGKRWKHGGKF RFKKWK
Sbjct: 120 HARPFGFGHGKFKHGKFGKRWKHGGKFGRFKKWK 153

The following BLAST results are available for this feature:

BLAST of Cla97C05G082990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022980434.1	1.5e-12	71.51	glycine-rich protein A3-like [Cucurbita maxima] >XP_022980435.1 glycine-rich pro...	[more]
XP_022924320.1	7.5e-12	70.93	glycine-rich protein A3-like [Cucurbita moschata] >XP_022924321.1 glycine-rich p...	[more]
XP_008438206.1	1.2e-09	94.12	PREDICTED: glycine-rich protein A3 [Cucumis melo]	[more]
XP_022950701.1	1.2e-09	68.32	glycine-rich protein A3 [Cucurbita moschata] >XP_022950709.1 glycine-rich protei...	[more]
XP_023527127.1	8.6e-08	66.85	glycine-rich protein A3-like [Cucurbita pepo subsp. pepo] >XP_023527129.1 glycin...	[more]

BLAST of Cla97C05G082990 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AWG9\|A0A1S3AWG9_CUCME	7.9e-10	94.12	glycine-rich protein A3 OS=Cucumis melo OX=3656 GN=LOC103483379 PE=4 SV=1	[more]

BLAST of Cla97C05G082990 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C05G082990 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G082990.1	Cla97C05G082990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31248	FAMILY NOT NAMED	coord: 1..159
None	No IPR available	PANTHER	PTHR31248:SF3	SUBFAMILY NOT NAMED	coord: 1..159

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G082990	CmoCh06G011800	Cucurbita moschata (Rifu)	cmowmbB833
Cla97C05G082990	Carg06366	Silver-seed gourd	carwmbB1008

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G082990	Wax gourd	wgowmbB080
Cla97C05G082990	Wax gourd	wgowmbB180
Cla97C05G082990	Watermelon (97103) v2	wmbwmbB131
Cla97C05G082990	Silver-seed gourd	carwmbB0229
Cla97C05G082990	Silver-seed gourd	carwmbB0647
Cla97C05G082990	Silver-seed gourd	carwmbB1130
Cla97C05G082990	Cucumber (Gy14) v2	cgybwmbB196
Cla97C05G082990	Cucumber (Gy14) v2	cgybwmbB437
Cla97C05G082990	Cucumber (Gy14) v1	cgywmbB452
Cla97C05G082990	Cucumber (Gy14) v1	cgywmbB622
Cla97C05G082990	Cucurbita maxima (Rimu)	cmawmbB005
Cla97C05G082990	Cucurbita maxima (Rimu)	cmawmbB263
Cla97C05G082990	Cucurbita maxima (Rimu)	cmawmbB366
Cla97C05G082990	Cucurbita maxima (Rimu)	cmawmbB856
Cla97C05G082990	Cucurbita maxima (Rimu)	cmawmbB916
Cla97C05G082990	Cucurbita moschata (Rifu)	cmowmbB243
Cla97C05G082990	Cucurbita moschata (Rifu)	cmowmbB350
Cla97C05G082990	Cucurbita moschata (Rifu)	cmowmbB890
Cla97C05G082990	Wild cucumber (PI 183967)	cpiwmbB209
Cla97C05G082990	Wild cucumber (PI 183967)	cpiwmbB485
Cla97C05G082990	Cucumber (Chinese Long) v3	cucwmbB206
Cla97C05G082990	Cucumber (Chinese Long) v3	cucwmbB478
Cla97C05G082990	Cucumber (Chinese Long) v2	cuwmbB204
Cla97C05G082990	Cucumber (Chinese Long) v2	cuwmbB460
Cla97C05G082990	Bottle gourd (USVL1VR-Ls)	lsiwmbB020
Cla97C05G082990	Bottle gourd (USVL1VR-Ls)	lsiwmbB333
Cla97C05G082990	Melon (DHL92) v3.6.1	medwmbB116
Cla97C05G082990	Melon (DHL92) v3.6.1	medwmbB423
Cla97C05G082990	Melon (DHL92) v3.5.1	mewmbB125
Cla97C05G082990	Melon (DHL92) v3.5.1	mewmbB434
Cla97C05G082990	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G082990	Watermelon (Charleston Gray)	wcgwmbB264
Cla97C05G082990	Watermelon (97103) v1	wmwmbB206
Cla97C05G082990	Watermelon (97103) v1	wmwmbB398