Cla97C05G082990.1 (mRNA) Watermelon (97103) v2

Overview
NameCla97C05G082990.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionglycine-rich protein A3
LocationCla97Chr05 : 2254058 .. 2255000 (+)
Sequence length480
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGTGGGAAGGAAAATGACAGCAGTGACAAAGACAAAGGCCTGTTTTCAAATATGGCGGCGTTTGCTGCGGGGCACCACTATCCTCATTCTCATGGATATCCACCACCACCATACGCTGGAGGATATCCCCCCCCGGGAGGGTACCCTCCGGCTGGGTATCCCCCTTCCGGTGGATATCCTCCGGCTGGCTATCCTCCTTACGGTGGACACCCTCATACAGCCTATCCATATCACGGCGGATACCCCCCTGCTGGCTATCCTGGCCCCCATCATTACCCTGGTATTATCTCATTCTACTGTTTGCTTTGATGACTTTGTTACTTGATAACACCTTTTGTTGATTGAATATGGGCGCTAAATGGTGAAGAGATTTTGGGCAAAGAAGGAAGATGGGACCAGCCTCCTCTTAAATCAGATTAGATTAAAACATATTTAAAATTTTTAGAATTAGAATCTAAACTTTAGATACTTCACTCGTTCAAGCTCATTTATTATCTTTAAAAACATGGAATCCTTTATTCCCATTTGAAATGGGCGTTGCGTTGGGGCGTGGAAGGCATCTGAAATTTGAGTGGATCTGTGCTATAAGCATAATACAGGACTTTCAAGAGTTCAATTATTAAAAAGAAAACAAGAAGTCTTATCGCCAACTATTTTATGACATTGGATCGTGACGGGTAGTTGTTATTGACAAAATTCTAACCATGGATCATCGTCATGGAGTTTTTGTTTTTTGTTTTCAGGCCATGGACACGGACACGGACACGGTATGGGGGGTATGGGGGGATTGTTGGCTGGTGCAGCCGCTGCTTACGGCGCTCATCATCTTGTTCATGCACGCCCATTTGGCTACGGTCACGGAAAGTTCAAACATGGGAAATTTGGCAAGCGTTGGAAGCATGGAGGCAAGTTCATGAGATTCAAGAAGTGGAAGTGA

mRNA sequence

ATGGGAGGTGGGAAGGAAAATGACAGCAGTGACAAAGACAAAGGCCTGTTTTCAAATATGGCGGCGTTTGCTGCGGGGCACCACTATCCTCATTCTCATGGATATCCACCACCACCATACGCTGGAGGATATCCCCCCCCGGGAGGGTACCCTCCGGCTGGGTATCCCCCTTCCGGTGGATATCCTCCGGCTGGCTATCCTCCTTACGGTGGACACCCTCATACAGCCTATCCATATCACGGCGGATACCCCCCTGCTGGCTATCCTGGCCCCCATCATTACCCTGGCCATGGACACGGACACGGACACGGTATGGGGGGTATGGGGGGATTGTTGGCTGGTGCAGCCGCTGCTTACGGCGCTCATCATCTTGTTCATGCACGCCCATTTGGCTACGGTCACGGAAAGTTCAAACATGGGAAATTTGGCAAGCGTTGGAAGCATGGAGGCAAGTTCATGAGATTCAAGAAGTGGAAGTGA

Coding sequence (CDS)

ATGGGAGGTGGGAAGGAAAATGACAGCAGTGACAAAGACAAAGGCCTGTTTTCAAATATGGCGGCGTTTGCTGCGGGGCACCACTATCCTCATTCTCATGGATATCCACCACCACCATACGCTGGAGGATATCCCCCCCCGGGAGGGTACCCTCCGGCTGGGTATCCCCCTTCCGGTGGATATCCTCCGGCTGGCTATCCTCCTTACGGTGGACACCCTCATACAGCCTATCCATATCACGGCGGATACCCCCCTGCTGGCTATCCTGGCCCCCATCATTACCCTGGCCATGGACACGGACACGGACACGGTATGGGGGGTATGGGGGGATTGTTGGCTGGTGCAGCCGCTGCTTACGGCGCTCATCATCTTGTTCATGCACGCCCATTTGGCTACGGTCACGGAAAGTTCAAACATGGGAAATTTGGCAAGCGTTGGAAGCATGGAGGCAAGTTCATGAGATTCAAGAAGTGGAAGTGA

Protein sequence

MGGGKENDSSDKDKGLFSNMAAFAAGHHYPHSHGYPPPPYAGGYPPPGGYPPAGYPPSGGYPPAGYPPYGGHPHTAYPYHGGYPPAGYPGPHHYPGHGHGHGHGMGGMGGLLAGAAAAYGAHHLVHARPFGYGHGKFKHGKFGKRWKHGGKFMRFKKWK
Homology
[Close]
BLAST of Cla97C05G082990.1 vs. NCBI nr
Match: XP_022980434.1 (glycine-rich protein A3-like [Cucurbita maxima] >XP_022980435.1 glycine-rich protein A3-like [Cucurbita maxima])

HSP 1 Score: 82.4 bits (202), Expect = 1.5e-12
Identity = 123/172 (71.51%), Postives = 128/172 (74.42%), Query Frame = 0 

Query: 1   MGGGKENDSSDKDKGLFSNMAAFAAGHHYPHSHGYPPXXXXXXXXXXXGYPPXXXXXXXX 60
           MGGGKE +S  KDKGLFS+MA+FAAG HY H HGYPP       XXXX    XXXXXXXX
Sbjct: 1   MGGGKEEES--KDKGLFSSMASFAAGQHYSHPHGYPPPPPYAGAXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLAGAAAA-- 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   G      
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHGLGMGGL 120

Query: 121 -----------YGAHHLVHARPFGYGHGKFKHGKFGKRWKHGGKFMRFKKWK 160
                         HHL HARPFG+GHGKFKHGKFGKRWKHGG   +FKKWK
Sbjct: 121 XXXXXXXXXXXXXXHHLAHARPFGFGHGKFKHGKFGKRWKHGGG--KFKKWK 168

[Close]
BLAST of Cla97C05G082990.1 vs. NCBI nr
Match: XP_022924320.1 (glycine-rich protein A3-like [Cucurbita moschata] >XP_022924321.1 glycine-rich protein A3-like [Cucurbita moschata])

HSP 1 Score: 80.1 bits (196), Expect = 7.5e-12
Identity = 122/172 (70.93%), Postives = 127/172 (73.84%), Query Frame = 0 

Query: 1   MGGGKENDSSDKDKGLFSNMAAFAAGHHYPHSHGYPPXXXXXXXXXXXGYPPXXXXXXXX 60
           MGGGKE +S  KDKGLFS+MA+FAAG HY H HGYPP       XXXX    XXXXXXXX
Sbjct: 1   MGGGKEEES--KDKGLFSSMASFAAGQHYSHPHGYPPPPPYAGAXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLAGAAAA-- 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   G      
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHGLGMGGL 120

Query: 121 -----------YGAHHLVHARPFGYGHGKFKHGKFGKRWKHGGKFMRFKKWK 160
                         HHL HARPFG+GHGKFKHGKFGKRWKHG    +FKKWK
Sbjct: 121 XXXXXXXXXXXXXXHHLAHARPFGFGHGKFKHGKFGKRWKHG--VGKFKKWK 168

[Close]
BLAST of Cla97C05G082990.1 vs. NCBI nr
Match: XP_008438206.1 (PREDICTED: glycine-rich protein A3 [Cucumis melo])

HSP 1 Score: 72.8 bits (177), Expect = 1.2e-09
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 0 

Query: 126 HARPFGYGHGKFKHGKFGKRWKHGGKFMRFKKWK 160
           HARPFG+GHGKFKHGKFGKRWKHGGKF RFKKWK
Sbjct: 120 HARPFGFGHGKFKHGKFGKRWKHGGKFGRFKKWK 153

[Close]
BLAST of Cla97C05G082990.1 vs. NCBI nr
Match: XP_022950701.1 (glycine-rich protein A3 [Cucurbita moschata] >XP_022950709.1 glycine-rich protein A3 [Cucurbita moschata])

HSP 1 Score: 72.8 bits (177), Expect = 1.2e-09
Identity = 110/161 (68.32%), Postives = 119/161 (73.91%), Query Frame = 0 

Query: 1   MGGGKENDSSDKDKGLFSNMAAFAAGHHYPHSHGYPPXXXXXXXXXXXGYPP--XXXXXX 60
           MGGGK+ D++  D+GL S+MAAFAAG+HY   HGYPP             PP    XXXX
Sbjct: 1   MGGGKDKDTN--DRGLLSHMAAFAAGNHYSRPHGYPPP------------PPCAGAXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLAGAAAA 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 YGAHHLVHARPFGYGHGKFKHGKFGKRWKHGGKFMRFKKWK 160
                     PFGYG+G+FKHGKFGKRWKHGGKFM+FKKWK
Sbjct: 121 XXXXXXXXXHPFGYGYGRFKHGKFGKRWKHGGKFMKFKKWK 147

[Close]
BLAST of Cla97C05G082990.1 vs. NCBI nr
Match: XP_023527127.1 (glycine-rich protein A3-like [Cucurbita pepo subsp. pepo] >XP_023527129.1 glycine-rich protein A3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 66.6 bits (161), Expect = 8.6e-08
Identity = 119/178 (66.85%), Postives = 124/178 (69.66%), Query Frame = 0 

Query: 1   MGGGKENDSSDKDKGLFSNMAAFAAGHHYPHSHGYPPXXXXXXXXXXXGYPPXXXXXXXX 60
           MGGGKE +S  KDKGLFS+MA+FAAG HY H HGYPP       XXXX    XXXXXXXX
Sbjct: 1   MGGGKEEES--KDKGLFSSMASFAAGQHYSHPHGYPPPPPYAGAXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLAG------ 120
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   G      
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHGLXXXXX 120

Query: 121 -------------AAAAYGAHHLVHARPFGYGHGKFKHGKFGKRWKHGGKFMRFKKWK 160
                                    ARPFG+GHGKFKHGKFGKRWKHGG   +FKKWK
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXARPFGFGHGKFKHGKFGKRWKHGGG--KFKKWK 174

[Close]
BLAST of Cla97C05G082990.1 vs. TrEMBL
Match: tr|A0A1S3AWG9|A0A1S3AWG9_CUCME (glycine-rich protein A3 OS=Cucumis melo OX=3656 GN=LOC103483379 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.9e-10
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 0 

Query: 126 HARPFGYGHGKFKHGKFGKRWKHGGKFMRFKKWK 160
           HARPFG+GHGKFKHGKFGKRWKHGGKF RFKKWK
Sbjct: 120 HARPFGFGHGKFKHGKFGKRWKHGGKFGRFKKWK 153

The following BLAST results are available for this feature:
BLAST of Cla97C05G082990.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022980434.11.5e-1271.51glycine-rich protein A3-like [Cucurbita maxima] >XP_022980435.1 glycine-rich pro... [more]
XP_022924320.17.5e-1270.93glycine-rich protein A3-like [Cucurbita moschata] >XP_022924321.1 glycine-rich p... [more]
XP_008438206.11.2e-0994.12PREDICTED: glycine-rich protein A3 [Cucumis melo][more]
XP_022950701.11.2e-0968.32glycine-rich protein A3 [Cucurbita moschata] >XP_022950709.1 glycine-rich protei... [more]
XP_023527127.18.6e-0866.85glycine-rich protein A3-like [Cucurbita pepo subsp. pepo] >XP_023527129.1 glycin... [more]
BLAST of Cla97C05G082990.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AWG9|A0A1S3AWG9_CUCME7.9e-1094.12glycine-rich protein A3 OS=Cucumis melo OX=3656 GN=LOC103483379 PE=4 SV=1[more]
BLAST of Cla97C05G082990.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C05G082990.1 vs. TAIR10
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla97C05G082990Cla97C05G082990gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C05G082990.1.exon.1Cla97C05G082990.1.exon.1exon
Cla97C05G082990.1.exon.2Cla97C05G082990.1.exon.2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C05G082990.1.CDS.1Cla97C05G082990.1.CDS.1CDS
Cla97C05G082990.1.CDS.2Cla97C05G082990.1.CDS.2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla97C05G082990.1Cla97C05G082990.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31248FAMILY NOT NAMEDcoord: 1..159
NoneNo IPR availablePANTHERPTHR31248:SF3SUBFAMILY NOT NAMEDcoord: 1..159