Carg06172 (gene) Silver-seed gourd

Overview
NameCarg06172
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionEarly light-induced protein
LocationCucurbita_argyrosperma_scaffold_016 : 99874 .. 101210 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTCTTCTGGTGAATTAGGAAGCCACGCCATTACACTTTTTCATGTGTGGACAATCCAACCCACGTGACTCTCTTATTTGGCGATGAATGGAAACTGCTGACGTGGAACCTAAGTATCCACCACTCCCTGCCCCATCCTCCGTTATATAAACCCCGCGGAGGTTCTCCTCTACATCATCATAGAAGCGCTCCACCGCCAATACGATAATTTCCATCGCTCTTTGATCGATCACTGCCCTTAGTCTCCGCCGTTCCTTTGCTCCGTTGACATTGAACCCCCAGGAACTGAGCGAAATGGCCACTTCTGCATTATTACAAGCCATTCCGGCGAGATCGGCATCTCGAACTACCCTTAGGACACCAACGAACCGGTTGTGTTCCAGGAGGACGGCCTCCTTCCGTGTGCGATGCACGGCGGAGGTAATCATTATTTTGTCTTCACTTTTAATCTTTGTTTATACAACCTAGGGCTTAATGTATGTCTAAATCTGTTTATTCGACTGGACTCTCAGGAGGAGCAGAGAGAGCAAGCGATTCCTACACCAGCTCCACCGACGTCAAATCCGTCCCCTCCGCCACCGTCTCCTAAGCCGAAGGTAAACAATCCGTTTACATCCACCAGCCGTTCTCAATCGACGGATCGAAACGTAACAGATCGTAGATGAACATTGTCTTTAAATATCATCGTTAATTTCGAATCTGATAATATGATCCTCAGGTGAGCACGAAATTCTCGGACGTCCTCGCATTCAGCGGGCCAGCGCCAGAGAGAATCAACGGGCGGCTAGCAATGATAGGCTTTGTGGCCGCTGTAGCGGTTGAGGCATGGAAAGGTCAGGATGTATTGGAGCAAATAGGCAACGGAGGAATTCCATGGTTTGTGGGAACAAGCGTGGTTTTGACACTGGCATCGCTGATTCCGCTATTTAAAGGGGTGAGTGTGGAGTCTAAGTCGAAGGGGCTTATGACATCCGACGCGGAGCTGTGGAATGGGAGGTTTGCGATGTTGGGGCTCGTAGCTTTGGCCTTCACTGAATTTGTCAAGGGTGGAAGCCTCGTGTAGATTGTAGTTCTGAGATGTAGATTCGATGTCTCTAAGAGAACAACGAATATGTTACTTAATAGTTTTCTGTAACAATGATTATTAGTAATACTTCTTCGTTTGCCTATATGTTATTTTTGTGTTTCTAATTAATTATGTGTACCAATAGCTATTAGTGCACTAATTAACATTTAATTTAAACCTATTAGGACTCACTATATTATAGGAATAATTATGAACCCATCAACTCCATTTGAATCTTTGTAATAATGATATACACATTATAAGATGTCT

mRNA sequence

GTTTCTTCTGGTGAATTAGGAAGCCACGCCATTACACTTTTTCATGTGTGGACAATCCAACCCACGTGACTCTCTTATTTGGCGATGAATGGAAACTGCTGACGTGGAACCTAAGTATCCACCACTCCCTGCCCCATCCTCCGTTATATAAACCCCGCGGAGGTTCTCCTCTACATCATCATAGAAGCGCTCCACCGCCAATACGATAATTTCCATCGCTCTTTGATCGATCACTGCCCTTAGTCTCCGCCGTTCCTTTGCTCCGTTGACATTGAACCCCCAGGAACTGAGCGAAATGGCCACTTCTGCATTATTACAAGCCATTCCGGCGAGATCGGCATCTCGAACTACCCTTAGGACACCAACGAACCGGTTGTGTTCCAGGAGGACGGCCTCCTTCCGTGTGCGATGCACGGCGGAGGAGGAGCAGAGAGAGCAAGCGATTCCTACACCAGCTCCACCGACGTCAAATCCGTCCCCTCCGCCACCGTCTCCTAAGCCGAAGGTGAGCACGAAATTCTCGGACGTCCTCGCATTCAGCGGGCCAGCGCCAGAGAGAATCAACGGGCGGCTAGCAATGATAGGCTTTGTGGCCGCTGTAGCGGTTGAGGCATGGAAAGGTCAGGATGTATTGGAGCAAATAGGCAACGGAGGAATTCCATGGTTTGTGGGAACAAGCGTGGTTTTGACACTGGCATCGCTGATTCCGCTATTTAAAGGGGTGAGTGTGGAGTCTAAGTCGAAGGGGCTTATGACATCCGACGCGGAGCTGTGGAATGGGAGGTTTGCGATGTTGGGGCTCGTAGCTTTGGCCTTCACTGAATTTGTCAAGGGTGGAAGCCTCGTGTAGATTGTAGTTCTGAGATGTAGATTCGATGTCTCTAAGAGAACAACGAATATGTTACTTAATAGTTTTCTGTAACAATGATTATTAGTAATACTTCTTCGTTTGCCTATATGTTATTTTTGTGTTTCTAATTAATTATGTGTACCAATAGCTATTAGTGCACTAATTAACATTTAATTTAAACCTATTAGGACTCACTATATTATAGGAATAATTATGAACCCATCAACTCCATTTGAATCTTTGTAATAATGATATACACATTATAAGATGTCT

Coding sequence (CDS)

ATGGCCACTTCTGCATTATTACAAGCCATTCCGGCGAGATCGGCATCTCGAACTACCCTTAGGACACCAACGAACCGGTTGTGTTCCAGGAGGACGGCCTCCTTCCGTGTGCGATGCACGGCGGAGGAGGAGCAGAGAGAGCAAGCGATTCCTACACCAGCTCCACCGACGTCAAATCCGTCCCCTCCGCCACCGTCTCCTAAGCCGAAGGTGAGCACGAAATTCTCGGACGTCCTCGCATTCAGCGGGCCAGCGCCAGAGAGAATCAACGGGCGGCTAGCAATGATAGGCTTTGTGGCCGCTGTAGCGGTTGAGGCATGGAAAGGTCAGGATGTATTGGAGCAAATAGGCAACGGAGGAATTCCATGGTTTGTGGGAACAAGCGTGGTTTTGACACTGGCATCGCTGATTCCGCTATTTAAAGGGGTGAGTGTGGAGTCTAAGTCGAAGGGGCTTATGACATCCGACGCGGAGCTGTGGAATGGGAGGTTTGCGATGTTGGGGCTCGTAGCTTTGGCCTTCACTGAATTTGTCAAGGGTGGAAGCCTCGTGTAG

Protein sequence

MATSALLQAIPARSASRTTLRTPTNRLCSRRTASFRVRCTAEEEQREQAIPTPAPPTSNPSPPPPSPKPKVSTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKGGSLV
Homology
[Close]
BLAST of Carg06172 vs. NCBI nr
Match: XP_022939396.1 (early light-induced protein 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 280.8 bits (717), Expect = 3.3e-72
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0 

Query: 1   MATSALLQAIPARSASRTTLRTPTNRLCSRRTASFRVRCTAXXXXXXXXXXXXXXXXXXX 60
           MATSALLQAIPARSASRTTLRTPTNRLCSRRTASFRVRCTAXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MATSALLQAIPARSASRTTLRTPTNRLCSRRTASFRVRCTAXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGG 120
           XXXXXXXXXXXXTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGG
Sbjct: 61  XXXXXXXXXXXXTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGG 120

Query: 121 IPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKG 180
           IPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKG
Sbjct: 121 IPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKG 180

Query: 181 GSLV 185
           GSLV
Sbjct: 181 GSLV 184

[Close]
BLAST of Carg06172 vs. NCBI nr
Match: XP_022974396.1 (early light-induced protein 1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 275.4 bits (703), Expect = 1.4e-70
Identity = 181/184 (98.37%), Postives = 181/184 (98.37%), Query Frame = 0 

Query: 1   MATSALLQAIPARSASRTTLRTPTNRLCSRRTASFRVRCTAXXXXXXXXXXXXXXXXXXX 60
           MATSALLQAIP  SASRTT RTPTNRLCSRRTASFRVRCTAXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MATSALLQAIPVSSASRTTFRTPTNRLCSRRTASFRVRCTAXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGG 120
           XXXXXXXXXXXXTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGG
Sbjct: 61  XXXXXXXXXXXXTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGG 120

Query: 121 IPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKG 180
           IPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKG
Sbjct: 121 IPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKG 180

Query: 181 GSLV 185
           GSLV
Sbjct: 181 GSLV 184

[Close]
BLAST of Carg06172 vs. NCBI nr
Match: XP_023539090.1 (early light-induced protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.8 bits (678), Expect = 1.1e-67
Identity = 178/184 (96.74%), Postives = 178/184 (96.74%), Query Frame = 0 

Query: 1   MATSALLQAIPARSASRTTLRTPTNRLCSRRTASFRVRCTAXXXXXXXXXXXXXXXXXXX 60
           MATSALLQAIPARSASRTT RTP   LCSRRTA FRVRCTA XXXXXXXXXXXXXXXXXX
Sbjct: 1   MATSALLQAIPARSASRTTFRTP---LCSRRTAFFRVRCTAEXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGG 120
           XXXXXXXXXXXXTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGG
Sbjct: 61  XXXXXXXXXXXXTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGG 120

Query: 121 IPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKG 180
           IPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKG
Sbjct: 121 IPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKG 180

Query: 181 GSLV 185
           GSLV
Sbjct: 181 GSLV 181

[Close]
BLAST of Carg06172 vs. NCBI nr
Match: XP_008438620.1 (PREDICTED: early light-induced protein 1, chloroplastic [Cucumis melo])

HSP 1 Score: 219.9 bits (559), Expect = 7.0e-54
Identity = 124/192 (64.58%), Postives = 137/192 (71.35%), Query Frame = 0 

Query: 1   MATSALLQAIPARSASRTTLRTPTN-------RLCSRRTASFRVRCTA-XXXXXXXXXXX 60
           MA SA++Q+IP+ +ASR   RT TN       RLCSR T +FRVRCT             
Sbjct: 1   MAASAVMQSIPSSTASRGVYRTTTNRLLPAAVRLCSRNTGAFRVRCTGEEDQREQAIPSS 60

Query: 61  XXXXXXXXXXXXXXXXXXXXTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDV 120
                               TKF+D+LAFSGP PERINGRLAMIGFVAA+AVE  KGQDV
Sbjct: 61  IPPSPPKLEPAPSSTSKVTSTKFTDILAFSGPGPERINGRLAMIGFVAALAVEVSKGQDV 120

Query: 121 LEQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVAL 180
            EQI NGGIPWFVGTSVVLTLASLIPLFKGVS ES SKG+M+S+AELWNGRFAMLGLVAL
Sbjct: 121 FEQIANGGIPWFVGTSVVLTLASLIPLFKGVSAESNSKGIMSSNAELWNGRFAMLGLVAL 180

Query: 181 AFTEFVKGGSLV 185
           AFTE+VKGGSLV
Sbjct: 181 AFTEYVKGGSLV 192

[Close]
BLAST of Carg06172 vs. NCBI nr
Match: XP_022955473.1 (early light-induced protein 1, chloroplastic-like [Cucurbita moschata] >XP_022955474.1 early light-induced protein 1, chloroplastic-like [Cucurbita moschata] >XP_022955475.1 early light-induced protein 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 217.2 bits (552), Expect = 4.5e-53
Identity = 140/191 (73.30%), Postives = 152/191 (79.58%), Query Frame = 0 

Query: 1   MATSALLQAIPARSASRTTLRTPTNRLC-------SRRTASFRVRCTAXXXXXXXXXXXX 60
           MA SA++Q+I A SASR   RTP NRL        SRR A+FRVRCTA            
Sbjct: 1   MAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAEEDQREPATPSS 60

Query: 61  XXXXXXXXXXXXXXXXXXXTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVL 120
            XXXXXXXXXXXXXXXXXX K +D+LAFSGPAPERINGRLAM+GFVAA+AVEA KGQDVL
Sbjct: 61  VXXXXXXXXXXXXXXXXXXXKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVL 120

Query: 121 EQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALA 180
           EQIGNGGIPWFVGTS +LTLASLIP  +GVSVES SKG MTS AELWNGRFAMLGL+ALA
Sbjct: 121 EQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLLALA 180

Query: 181 FTEFVKGGSLV 185
           FTE+V GGSLV
Sbjct: 181 FTEYVTGGSLV 191

[Close]
BLAST of Carg06172 vs. TAIR10
Match: AT3G22840.1 (Chlorophyll A-B binding family protein)

HSP 1 Score: 191.0 bits (484), Expect = 6.3e-49
Identity = 92/112 (82.14%), Postives = 106/112 (94.64%), Query Frame = 0 

Query: 73  TKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGGIPWFVGTSVVLT 132
           TKFSD+LAFSGPAPERINGRLAM+GFVAA+AVE  KG++VL QI +GG+ WF+GT+ +LT
Sbjct: 84  TKFSDLLAFSGPAPERINGRLAMVGFVAALAVELSKGENVLAQISDGGVSWFLGTTAILT 143

Query: 133 LASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKGGSLV 185
           LASL+PLFKG+SVESKSKG+MTSDAELWNGRFAMLGLVALAFTEFVKGG+LV
Sbjct: 144 LASLVPLFKGISVESKSKGIMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 195

[Close]
BLAST of Carg06172 vs. TAIR10
Match: AT4G14690.1 (Chlorophyll A-B binding family protein)

HSP 1 Score: 176.8 bits (447), Expect = 1.2e-44
Identity = 83/112 (74.11%), Postives = 100/112 (89.29%), Query Frame = 0 

Query: 73  TKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGGIPWFVGTSVVLT 132
           TKF D+LAFSGPAPERINGRLAM+GFVAA+A+E  KG++V  QI +GG+ WF+GT+ +LT
Sbjct: 82  TKFGDLLAFSGPAPERINGRLAMVGFVAAIAMELSKGENVFAQISDGGVGWFLGTTALLT 141

Query: 133 LASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKGGSLV 185
           LAS++PLFKG+  E+KSKG MTSDAELWNGRFAMLGLVALAFTE+V GG+LV
Sbjct: 142 LASMVPLFKGIRAEAKSKGFMTSDAELWNGRFAMLGLVALAFTEYVTGGTLV 193

[Close]
BLAST of Carg06172 vs. Swiss-Prot
Match: sp|P93735|ELIP1_ARATH (Early light-induced protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ELIP1 PE=1 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.1e-47
Identity = 92/112 (82.14%), Postives = 106/112 (94.64%), Query Frame = 0 

Query: 73  TKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGGIPWFVGTSVVLT 132
           TKFSD+LAFSGPAPERINGRLAM+GFVAA+AVE  KG++VL QI +GG+ WF+GT+ +LT
Sbjct: 84  TKFSDLLAFSGPAPERINGRLAMVGFVAALAVELSKGENVLAQISDGGVSWFLGTTAILT 143

Query: 133 LASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKGGSLV 185
           LASL+PLFKG+SVESKSKG+MTSDAELWNGRFAMLGLVALAFTEFVKGG+LV
Sbjct: 144 LASLVPLFKGISVESKSKGIMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 195

[Close]
BLAST of Carg06172 vs. Swiss-Prot
Match: sp|Q94K66|ELIP2_ARATH (Early light-induced protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ELIP2 PE=1 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.2e-43
Identity = 83/112 (74.11%), Postives = 100/112 (89.29%), Query Frame = 0 

Query: 73  TKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGGIPWFVGTSVVLT 132
           TKF D+LAFSGPAPERINGRLAM+GFVAA+A+E  KG++V  QI +GG+ WF+GT+ +LT
Sbjct: 82  TKFGDLLAFSGPAPERINGRLAMVGFVAAIAMELSKGENVFAQISDGGVGWFLGTTALLT 141

Query: 133 LASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKGGSLV 185
           LAS++PLFKG+  E+KSKG MTSDAELWNGRFAMLGLVALAFTE+V GG+LV
Sbjct: 142 LASMVPLFKGIRAEAKSKGFMTSDAELWNGRFAMLGLVALAFTEYVTGGTLV 193

[Close]
BLAST of Carg06172 vs. Swiss-Prot
Match: sp|P11432|ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 4.9e-43
Identity = 87/112 (77.68%), Postives = 99/112 (88.39%), Query Frame = 0 

Query: 73  TKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGGIPWFVGTSVVLT 132
           TKFSD++AFSGPAPERINGRLAMIGFVAA+ VE  KGQ + EQ+  GG+ WF+GTSV+L+
Sbjct: 85  TKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLS 144

Query: 133 LASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKGGSLV 185
           LASLIP F+GVSVESKSK +M+SDAE WNGR AMLGLVALAFTEFVKG SLV
Sbjct: 145 LASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196

[Close]
BLAST of Carg06172 vs. Swiss-Prot
Match: sp|Q01931|DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum OX=4153 GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.5e-34
Identity = 70/108 (64.81%), Postives = 87/108 (80.56%), Query Frame = 0 

Query: 77  DVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGGIPWFVGTSVVLTLASL 136
           D+ +F G APERINGR AMIGFVAAV VE   G+DV  Q+ NGG+ WF+ TS VL LA+L
Sbjct: 90  DLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATL 149

Query: 137 IPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKGGSLV 185
           IP+++G+S E+K+ G   SDAE+WNGRFAM+GLVALAFTE+VKGG L+
Sbjct: 150 IPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197

[Close]
BLAST of Carg06172 vs. Swiss-Prot
Match: sp|P14895|ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.1e-33
Identity = 71/110 (64.55%), Postives = 90/110 (81.82%), Query Frame = 0 

Query: 77  DVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIG--NGGIPWFVGTSVVLTLA 136
           D LAFSGPAPERINGRLAM+GFVAA++VEA +G  +L+Q+G  + G+ WF+ T+ V ++A
Sbjct: 120 DALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVA 179

Query: 137 SLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKGGSLV 185
           SL+PL +G SVESKS G+ ++DAELWNGRFAMLGLVALA TEF+ G   V
Sbjct: 180 SLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229

[Close]
BLAST of Carg06172 vs. TrEMBL
Match: tr|A0A1S3AXH6|A0A1S3AXH6_CUCME (early light-induced protein 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483676 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 4.6e-54
Identity = 124/192 (64.58%), Postives = 137/192 (71.35%), Query Frame = 0 

Query: 1   MATSALLQAIPARSASRTTLRTPTN-------RLCSRRTASFRVRCTA-XXXXXXXXXXX 60
           MA SA++Q+IP+ +ASR   RT TN       RLCSR T +FRVRCT             
Sbjct: 1   MAASAVMQSIPSSTASRGVYRTTTNRLLPAAVRLCSRNTGAFRVRCTGEEDQREQAIPSS 60

Query: 61  XXXXXXXXXXXXXXXXXXXXTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDV 120
                               TKF+D+LAFSGP PERINGRLAMIGFVAA+AVE  KGQDV
Sbjct: 61  IPPSPPKLEPAPSSTSKVTSTKFTDILAFSGPGPERINGRLAMIGFVAALAVEVSKGQDV 120

Query: 121 LEQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVAL 180
            EQI NGGIPWFVGTSVVLTLASLIPLFKGVS ES SKG+M+S+AELWNGRFAMLGLVAL
Sbjct: 121 FEQIANGGIPWFVGTSVVLTLASLIPLFKGVSAESNSKGIMSSNAELWNGRFAMLGLVAL 180

Query: 181 AFTEFVKGGSLV 185
           AFTE+VKGGSLV
Sbjct: 181 AFTEYVKGGSLV 192

[Close]
BLAST of Carg06172 vs. TrEMBL
Match: tr|A0A0A0LA49|A0A0A0LA49_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G145780 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 5.7e-52
Identity = 139/192 (72.40%), Postives = 153/192 (79.69%), Query Frame = 0 

Query: 1   MATSALLQAIPARSASRTTLRTPTNRL-------CSRRTASFRVRCTA-XXXXXXXXXXX 60
           MA SA++Q+I + +A+R   RT TNRL       CSR TA+FRVRC A            
Sbjct: 1   MAASAVMQSILSTTATRGVYRTTTNRLLPAALRPCSRSTAAFRVRCMAEEDQREQAIPSS 60

Query: 61  XXXXXXXXXXXXXXXXXXXXTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDV 120
           XXXXXXXXXXXXXXXXX   TK +D+LAFSGP PERINGRLAMIGFVAA+AVE  KGQDV
Sbjct: 61  XXXXXXXXXXXXXXXXXVTSTKLTDILAFSGPGPERINGRLAMIGFVAALAVEVSKGQDV 120

Query: 121 LEQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVAL 180
            EQI NGGIPWFVGTSVVLTLASLIPLFKGVS ES SKG+M+S+AELWNGRFAMLGLVAL
Sbjct: 121 FEQIANGGIPWFVGTSVVLTLASLIPLFKGVSAESNSKGIMSSNAELWNGRFAMLGLVAL 180

Query: 181 AFTEFVKGGSLV 185
           AFTE+VKGGSLV
Sbjct: 181 AFTEYVKGGSLV 192

[Close]
BLAST of Carg06172 vs. TrEMBL
Match: tr|A0A2P5FWA6|A0A2P5FWA6_9ROSA (Chlorophyll A-B binding protein OS=Trema orientalis OX=63057 GN=TorRG33x02_018670 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.9e-47
Identity = 99/112 (88.39%), Postives = 105/112 (93.75%), Query Frame = 0 

Query: 73  TKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGGIPWFVGTSVVLT 132
           TKFSDVLAFSGPAPERINGRLAM+GFVAA+AVE  KGQDV  QI NGGI WFVGTS+VLT
Sbjct: 81  TKFSDVLAFSGPAPERINGRLAMVGFVAAMAVELSKGQDVFAQISNGGISWFVGTSIVLT 140

Query: 133 LASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKGGSLV 185
           LASL+PLFKGVSVESKS GLMTSDAELWNGRFAMLGLVALAFTE+VKGG+LV
Sbjct: 141 LASLVPLFKGVSVESKSNGLMTSDAELWNGRFAMLGLVALAFTEYVKGGTLV 192

[Close]
BLAST of Carg06172 vs. TrEMBL
Match: tr|A0A151U6R7|A0A151U6R7_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_007678 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.9e-47
Identity = 99/112 (88.39%), Postives = 106/112 (94.64%), Query Frame = 0 

Query: 73  TKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGGIPWFVGTSVVLT 132
           TKFSDVLAFSGPAPERINGRLAMIGFVAA+AVE  KGQ V EQI NGGIPWF+GTSVVLT
Sbjct: 52  TKFSDVLAFSGPAPERINGRLAMIGFVAAMAVEVAKGQGVFEQISNGGIPWFLGTSVVLT 111

Query: 133 LASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKGGSLV 185
           LASLIPLF+GVSVESKSKG M+SDAELWNGRFAMLGL+ALAFTE+VKGG+LV
Sbjct: 112 LASLIPLFQGVSVESKSKGFMSSDAELWNGRFAMLGLIALAFTEYVKGGTLV 163

[Close]
BLAST of Carg06172 vs. TrEMBL
Match: tr|I1NGK2|I1NGK2_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_20G150600 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 3.2e-47
Identity = 99/112 (88.39%), Postives = 106/112 (94.64%), Query Frame = 0 

Query: 73  TKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGGIPWFVGTSVVLT 132
           TKFSDVLAFSGPAPERINGRLAMIGFVAA+AVE  KGQ VLEQI NGGIPWF+GTSVVLT
Sbjct: 81  TKFSDVLAFSGPAPERINGRLAMIGFVAAMAVEVAKGQGVLEQISNGGIPWFLGTSVVLT 140

Query: 133 LASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKGGSLV 185
           LASLIPLF+GVSVESKSKG M+SDAELWNGRFAMLGL+ALAFTE+VKG +LV
Sbjct: 141 LASLIPLFQGVSVESKSKGFMSSDAELWNGRFAMLGLIALAFTEYVKGSTLV 192

The following BLAST results are available for this feature:
BLAST of Carg06172 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022939396.13.3e-72100.00early light-induced protein 1, chloroplastic-like [Cucurbita moschata][more]
XP_022974396.11.4e-7098.37early light-induced protein 1, chloroplastic-like [Cucurbita maxima][more]
XP_023539090.11.1e-6796.74early light-induced protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_008438620.17.0e-5464.58PREDICTED: early light-induced protein 1, chloroplastic [Cucumis melo][more]
XP_022955473.14.5e-5373.30early light-induced protein 1, chloroplastic-like [Cucurbita moschata] >XP_02295... [more]
BLAST of Carg06172 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G22840.16.3e-4982.14Chlorophyll A-B binding family protein[more]
AT4G14690.11.2e-4474.11Chlorophyll A-B binding family protein[more]
BLAST of Carg06172 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P93735|ELIP1_ARATH1.1e-4782.14Early light-induced protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=... [more]
sp|Q94K66|ELIP2_ARATH2.2e-4374.11Early light-induced protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=... [more]
sp|P11432|ELI_PEA4.9e-4377.68Early light-induced protein, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1[more]
sp|Q01931|DS22_CRAPL2.5e-3464.81Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum O... [more]
sp|P14895|ELI5_HORVU2.1e-3364.55High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum... [more]
BLAST of Carg06172 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AXH6|A0A1S3AXH6_CUCME4.6e-5464.58early light-induced protein 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10348... [more]
tr|A0A0A0LA49|A0A0A0LA49_CUCSA5.7e-5272.40Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G145780 PE=4 SV=1[more]
tr|A0A2P5FWA6|A0A2P5FWA6_9ROSA1.9e-4788.39Chlorophyll A-B binding protein OS=Trema orientalis OX=63057 GN=TorRG33x02_01867... [more]
tr|A0A151U6R7|A0A151U6R7_CAJCA1.9e-4788.39Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_007678 PE=4 S... [more]
tr|I1NGK2|I1NGK2_SOYBN3.2e-4788.39Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_20G150600 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR022796Chloroa_b-bind
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06172-RACarg06172-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 84..127
e-value: 3.1E-5
score: 24.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..70
NoneNo IPR availablePANTHERPTHR14154UPF0041 BRAIN PROTEIN 44-RELATEDcoord: 16..183
NoneNo IPR availablePANTHERPTHR14154:SF5EARLY LIGHT-INDUCED PROTEIN 1, CHLOROPLASTIC-RELATEDcoord: 16..183
NoneNo IPR availableSUPERFAMILYSSF103511Chlorophyll a-b binding proteincoord: 61..180

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg06172Cla021590Watermelon (97103) v1carwmB0961
Carg06172Csa3G145780Cucumber (Chinese Long) v2carcuB0975
Carg06172MELO3C006499Melon (DHL92) v3.5.1carmeB0941
Carg06172ClCG05G004850Watermelon (Charleston Gray)carwcgB0935
Carg06172CSPI03G12760Wild cucumber (PI 183967)carcpiB0998
Carg06172Cucsa.254640Cucumber (Gy14) v1carcgyB1077
Carg06172CmaCh06G013690Cucurbita maxima (Rimu)carcmaB1325
Carg06172CmaCh14G017470Cucurbita maxima (Rimu)carcmaB1320
Carg06172CmoCh06G013820Cucurbita moschata (Rifu)carcmoB1288
Carg06172CmoCh14G017840Cucurbita moschata (Rifu)carcmoB1284
Carg06172Lsi05G016390Bottle gourd (USVL1VR-Ls)carlsiB878
Carg06172Cp4.1LG03g10370Cucurbita pepo (Zucchini)carcpeB1331
Carg06172Cp4.1LG08g03840Cucurbita pepo (Zucchini)carcpeB1333
Carg06172CsGy3G012910Cucumber (Gy14) v2carcgybB0948
Carg06172MELO3C006499.2Melon (DHL92) v3.6.1carmedB0947
Carg06172CsaV3_3G012890Cucumber (Chinese Long) v3carcucB1003
Carg06172Cla97C05G085940Watermelon (97103) v2carwmbB1008
Carg06172Bhi01G000550Wax gourdcarwgoB1119
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg06172Carg23487Silver-seed gourdcarcarB630
The following block(s) are covering this gene:
GeneOrganismBlock
Carg06172Watermelon (97103) v2carwmbB1009
Carg06172Watermelon (97103) v2carwmbB1012
Carg06172Watermelon (97103) v2carwmbB1013
Carg06172Wax gourdcarwgoB1114
Carg06172Wax gourdcarwgoB1124
Carg06172Silver-seed gourdcarcarB136
Carg06172Silver-seed gourdcarcarB266
Carg06172Silver-seed gourdcarcarB349
Carg06172Silver-seed gourdcarcarB610
Carg06172Cucumber (Gy14) v2carcgybB0945
Carg06172Cucumber (Gy14) v1carcgyB1081
Carg06172Cucurbita maxima (Rimu)carcmaB1321
Carg06172Cucurbita maxima (Rimu)carcmaB1327
Carg06172Cucurbita maxima (Rimu)carcmaB1328
Carg06172Cucurbita moschata (Rifu)carcmoB1285
Carg06172Cucurbita moschata (Rifu)carcmoB1289
Carg06172Cucurbita moschata (Rifu)carcmoB1290
Carg06172Cucurbita pepo (Zucchini)carcpeB1328
Carg06172Cucurbita pepo (Zucchini)carcpeB1330
Carg06172Wild cucumber (PI 183967)carcpiB0995
Carg06172Cucumber (Chinese Long) v2carcuB0974
Carg06172Cucumber (Chinese Long) v3carcucB1001
Carg06172Bottle gourd (USVL1VR-Ls)carlsiB876
Carg06172Bottle gourd (USVL1VR-Ls)carlsiB877
Carg06172Melon (DHL92) v3.5.1carmeB0940
Carg06172Melon (DHL92) v3.6.1carmedB0946
Carg06172Watermelon (Charleston Gray)carwcgB0934
Carg06172Watermelon (Charleston Gray)carwcgB0936
Carg06172Watermelon (97103) v1carwmB0962
Carg06172Watermelon (97103) v1carwmB0959