CmaCh14G017470 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh14G017470
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Early light-induced protein, putative
Location	Cma_Chr14 : 12773702 .. 12774796 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCCGATGTTCACCATATGATCATCACTACCAGTTCACTGATCGACAAACAACAGCTCTCCATAGCCAATTTCATCATACTCTGTAACCGATACATCCAGTAAGTGTTGGCGTTATCCCTCCTACGACATCGTTCTATACCTCAGGACATAGCTTAATGGCTGCCTCAGCTGTAATGCAATCCATTCTGGTGAGCTCGGCTAGACAAAATGCTTGTAGGACACCGGCGAATCGGCTTCTCCCGGCGGCGGTTCAGCCGTTCTCCCGGAGAGCGGCTAACTTCCGAGTGCGATGTACGGCGGAGGTACTTGCTCGGCTATTTCCGTTTTTTCTTGGTGACTAAATGTACTTCTATTCTGCTATTGAAGTTTCCAAGGCTACAATCGTGGAGTGATCTGTTGTATTGTTTTGATTTACAGGAGGATCAGAGAGAGCCAGCGACTCCTACATCGGTTTCACTGCCGTCTCCACAACCAGGGCCATCTCCCACGCCATCGCCGAAGGTAATTAAACCTGCAACATCTACAAGGTGTTCTCGATTAAACGCCTGAAACGTAATAGACCGTAGGAGAACATTAATAGCCATTACATCGTTGATTTGAGATCTGCTAATCTTCGCAGATGAGTACGAAGTTAACAGACATTTTGGCGTTCAGCGGGCCAGCGCCGGAGAGGATCAACGGGCGGCTTGCGATGGTAGGGTTCGTAGCTGCCCTAGCGGTCGAAGCAGCGAAAGGACAGGACGTGTTGGAGCAAATAGGGAACGGGGGAATCCCGTGGTTTGTGGGAACAAGCGCGATTCTGACACTGGCGTCGCTGATTCCCTTTATTAGAGGAGTGAGTGTGGAGTCTAACTCGAAGGGGTTTATGACTTCCAAGGCGGAGCTGTGGAATGGGAGGTTTGCGATGTTGGGCCTTGTTGCTTTGGCCTTCACCGAGTATGTCACTGGCGGAAGCCTCGTGTAAGTTGTAGTTGGGAGCTTTTGGATATGTCTACTTCAGTCTTAATGCAAAATCATATCCGTTCAAATGGAGATACAAAGGAAATCATGTAAATATTTCTAAATAATCAAACAAAAAGTTTCAAAATTTCGGC

mRNA sequence

CGCCGATGTTCACCATATGATCATCACTACCAGTTCACTGATCGACAAACAACAGCTCTCCATAGCCAATTTCATCATACTCTGTAACCGATACATCCAGTAAGTGTTGGCGTTATCCCTCCTACGACATCGTTCTATACCTCAGGACATAGCTTAATGGCTGCCTCAGCTGTAATGCAATCCATTCTGGTGAGCTCGGCTAGACAAAATGCTTGTAGGACACCGGCGAATCGGCTTCTCCCGGCGGCGGTTCAGCCGTTCTCCCGGAGAGCGGCTAACTTCCGAGTGCGATGTACGGCGGAGGAGGATCAGAGAGAGCCAGCGACTCCTACATCGGTTTCACTGCCGTCTCCACAACCAGGGCCATCTCCCACGCCATCGCCGAAGATGAGTACGAAGTTAACAGACATTTTGGCGTTCAGCGGGCCAGCGCCGGAGAGGATCAACGGGCGGCTTGCGATGGTAGGGTTCGTAGCTGCCCTAGCGGTCGAAGCAGCGAAAGGACAGGACGTGTTGGAGCAAATAGGGAACGGGGGAATCCCGTGGTTTGTGGGAACAAGCGCGATTCTGACACTGGCGTCGCTGATTCCCTTTATTAGAGGAGTGAGTGTGGAGTCTAACTCGAAGGGGTTTATGACTTCCAAGGCGGAGCTGTGGAATGGGAGGTTTGCGATGTTGGGCCTTGTTGCTTTGGCCTTCACCGAGTATGTCACTGGCGGAAGCCTCGTGTAAGTTGTAGTTGGGAGCTTTTGGATATGTCTACTTCAGTCTTAATGCAAAATCATATCCGTTCAAATGGAGATACAAAGGAAATCATGTAAATATTTCTAAATAATCAAACAAAAAGTTTCAAAATTTCGGC

Coding sequence (CDS)

ATGGCTGCCTCAGCTGTAATGCAATCCATTCTGGTGAGCTCGGCTAGACAAAATGCTTGTAGGACACCGGCGAATCGGCTTCTCCCGGCGGCGGTTCAGCCGTTCTCCCGGAGAGCGGCTAACTTCCGAGTGCGATGTACGGCGGAGGAGGATCAGAGAGAGCCAGCGACTCCTACATCGGTTTCACTGCCGTCTCCACAACCAGGGCCATCTCCCACGCCATCGCCGAAGATGAGTACGAAGTTAACAGACATTTTGGCGTTCAGCGGGCCAGCGCCGGAGAGGATCAACGGGCGGCTTGCGATGGTAGGGTTCGTAGCTGCCCTAGCGGTCGAAGCAGCGAAAGGACAGGACGTGTTGGAGCAAATAGGGAACGGGGGAATCCCGTGGTTTGTGGGAACAAGCGCGATTCTGACACTGGCGTCGCTGATTCCCTTTATTAGAGGAGTGAGTGTGGAGTCTAACTCGAAGGGGTTTATGACTTCCAAGGCGGAGCTGTGGAATGGGAGGTTTGCGATGTTGGGCCTTGTTGCTTTGGCCTTCACCGAGTATGTCACTGGCGGAAGCCTCGTGTAA

Protein sequence

MAASAVMQSILVSSARQNACRTPANRLLPAAVQPFSRRAANFRVRCTAEEDQREPATPTSVSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVLEQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLVALAFTEYVTGGSLV

Homology

[Close]

BLAST of CmaCh14G017470 vs. Swiss-Prot
Match: ELIP1_ARATH (Early light-induced protein 1, chloroplastic OS=Arabidopsis thaliana GN=ELIP1 PE=1 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 4.3e-50
Identity = 115/194 (59.28%), Postives = 136/194 (70.10%), Query Frame = 1


Query: 3   ASAVMQSILVSSARQNACRTPANRLLPAAVQPFSRRAANFRVRCTAE----EDQREPATP 62
           AS  MQS+           T  N+L  A   P  +R     VRC AE     +   PA  
Sbjct: 4   ASFNMQSVFAGGLTTRKINT--NKLFSAGSFPNLKRNYPVGVRCMAEGGPTNEDSSPAPS 63

Query: 63  TSVSLPSPQ-PGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQ 122
           TS + P P+ P P P   PK+STK +D+LAFSGPAPERINGRLAMVGFVAALAVE +KG+
Sbjct: 64  TSAAQPLPKSPSPPPPMKPKVSTKFSDLLAFSGPAPERINGRLAMVGFVAALAVELSKGE 123

Query: 123 DVLEQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLV 182
           +VL QI +GG+ WF+GT+AILTLASL+P  +G+SVES SKG MTS AELWNGRFAMLGLV
Sbjct: 124 NVLAQISDGGVSWFLGTTAILTLASLVPLFKGISVESKSKGIMTSDAELWNGRFAMLGLV 183

Query: 183 ALAFTEYVTGGSLV 192
           ALAFTE+V GG+LV
Sbjct: 184 ALAFTEFVKGGTLV 195

[Close]

BLAST of CmaCh14G017470 vs. Swiss-Prot
Match: ELIP2_ARATH (Early light-induced protein 2, chloroplastic OS=Arabidopsis thaliana GN=ELIP2 PE=1 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 2.3e-48
Identity = 111/195 (56.92%), Postives = 136/195 (69.74%), Query Frame = 1


Query: 3   ASAVMQSILVSSARQNACRTPANRLLPAAVQPFSRRAANFRVRCTAE-----EDQREPAT 62
           AS  MQS+  + +     R   N       Q F +R A   VRC A+     ED   P+T
Sbjct: 4   ASFNMQSVFAAPSGVLTTRNIRN-----TNQLFFKRIAPVGVRCMAQGDPIKEDPSVPST 63

Query: 63  PTSVSLPS-PQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKG 122
            TS + P  PQ  P P   PK+STK  D+LAFSGPAPERINGRLAMVGFVAA+A+E +KG
Sbjct: 64  STSATPPQMPQSPPPPVSKPKVSTKFGDLLAFSGPAPERINGRLAMVGFVAAIAMELSKG 123

Query: 123 QDVLEQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGL 182
           ++V  QI +GG+ WF+GT+A+LTLAS++P  +G+  E+ SKGFMTS AELWNGRFAMLGL
Sbjct: 124 ENVFAQISDGGVGWFLGTTALLTLASMVPLFKGIRAEAKSKGFMTSDAELWNGRFAMLGL 183

Query: 183 VALAFTEYVTGGSLV 192
           VALAFTEYVTGG+LV
Sbjct: 184 VALAFTEYVTGGTLV 193

[Close]

BLAST of CmaCh14G017470 vs. Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.3e-46
Identity = 108/197 (54.82%), Postives = 139/197 (70.56%), Query Frame = 1


Query: 1   MAASAVMQSILVSSARQNACRTPANRL--LPAAVQPFSRRAANFRVRCTAEEDQREPAT- 60
           MA S+  QSI+ +S    + R+  N+   +P+   P  RR  + +VR  AE + +E +  
Sbjct: 1   MAVSSC-QSIMSNSMTNISSRSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKV 60

Query: 61  ---PTSVSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAA 120
              PT+ +  +P P P+ T  PKMSTK +D++AFSGPAPERINGRLAM+GFVAA+ VE A
Sbjct: 61  AVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIA 120

Query: 121 KGQDVLEQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAML 180
           KGQ + EQ+  GG+ WF+GTS +L+LASLIPF +GVSVES SK  M+S AE WNGR AML
Sbjct: 121 KGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAML 180

Query: 181 GLVALAFTEYVTGGSLV 192
           GLVALAFTE+V G SLV
Sbjct: 181 GLVALAFTEFVKGTSLV 196

[Close]

BLAST of CmaCh14G017470 vs. Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.1e-34
Identity = 95/198 (47.98%), Postives = 124/198 (62.63%), Query Frame = 1


Query: 1   MAASAVMQSILVSSARQNACRT---PANRLL--PAAVQPFSRRAANFRVRCTAEEDQREP 60
           MA+S    +I   S R  +  T   P N  L   +   P  RR A F VR   E++++E 
Sbjct: 1   MASSTCYATIPAMSCRGQSTITRFGPNNLFLGKQSYELPLMRRNAKFTVRSMREDNEKEE 60

Query: 61  ATPTSVSLPSPQPGPSPTPS-PKMSTKLT-DILAFSGPAPERINGRLAMVGFVAALAVEA 120
                    +   GP  TP+  +++TK T D+ +F G APERINGR AM+GFVAA+ VE 
Sbjct: 61  QQQQKQQ-QTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVEL 120

Query: 121 AKGQDVLEQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAM 180
           A G+DV  Q+ NGG+ WF+ TSA+L LA+LIP  RG+S E+ + GF  S AE+WNGRFAM
Sbjct: 121 ATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAM 180

Query: 181 LGLVALAFTEYVTGGSLV 192
           +GLVALAFTEYV GG L+
Sbjct: 181 IGLVALAFTEYVKGGPLI 197

[Close]

BLAST of CmaCh14G017470 vs. Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 7.3e-34
Identity = 86/163 (52.76%), Postives = 110/163 (67.48%), Query Frame = 1


Query: 41  NFRVRCTAEEDQREPATPTSVSLPSPQPGPSPTPS-----PKMSTK-----LTDILAFSG 100
           N  V    + D  +  T  S S PSP    SP+P+     PK  TK     + D LAFSG
Sbjct: 68  NLFVYVQPDMDSAKETTSASTS-PSPSQYTSPSPTTIPAAPKPVTKKANPSVWDALAFSG 127

Query: 101 PAPERINGRLAMVGFVAALAVEAAKGQDVLEQIG--NGGIPWFVGTSAILTLASLIPFIR 160
           PAPERINGRLAMVGFVAAL+VEAA+G  +L+Q+G  + G+ WF+ T+ + ++ASL+P ++
Sbjct: 128 PAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQ 187

Query: 161 GVSVESNSKGFMTSKAELWNGRFAMLGLVALAFTEYVTGGSLV 192
           G SVES S G  ++ AELWNGRFAMLGLVALA TE++TG   V
Sbjct: 188 GQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229

[Close]

BLAST of CmaCh14G017470 vs. TrEMBL
Match: A0A0A0LA49_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G145780 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 3.2e-68
Identity = 144/192 (75.00%), Postives = 159/192 (82.81%), Query Frame = 1


Query: 1   MAASAVMQSILVSSARQNACRTPANRLLPAAVQPFSRRAANFRVRCTAEEDQREPATPTS 60
           MAASAVMQSIL ++A +   RT  NRLLPAA++P SR  A FRVRC AEEDQRE A P+S
Sbjct: 1   MAASAVMQSILSTTATRGVYRTTTNRLLPAALRPCSRSTAAFRVRCMAEEDQREQAIPSS 60

Query: 61  VSLPSPQPGPSPTPSPKM-STKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDV 120
           +    P+P PSP+P  K+ STKLTDILAFSGP PERINGRLAM+GFVAALAVE +KGQDV
Sbjct: 61  IPPSPPKPEPSPSPPSKVTSTKLTDILAFSGPGPERINGRLAMIGFVAALAVEVSKGQDV 120

Query: 121 LEQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLVAL 180
            EQI NGGIPWFVGTS +LTLASLIP  +GVS ESNSKG M+S AELWNGRFAMLGLVAL
Sbjct: 121 FEQIANGGIPWFVGTSVVLTLASLIPLFKGVSAESNSKGIMSSNAELWNGRFAMLGLVAL 180

Query: 181 AFTEYVTGGSLV 192
           AFTEYV GGSLV
Sbjct: 181 AFTEYVKGGSLV 192

[Close]

BLAST of CmaCh14G017470 vs. TrEMBL
Match: I1LE02_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G243800 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.3e-53
Identity = 124/198 (62.63%), Postives = 143/198 (72.22%), Query Frame = 1


Query: 2   AASAVMQSILV-------SSARQNACRTPANRLLPAAVQPFSRRAANFRVRCTAEEDQ-R 61
           A+S  MQSIL        S +R+N    PA  +         RR    RVR  AEE+Q  
Sbjct: 3   ASSYAMQSILANPMIRISSGSRENHFGVPAYHM---------RRNVGLRVRSMAEEEQPS 62

Query: 62  EPATPTSVSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEA 121
           +PATP +     P+P P  TPSPK+STK +D+LAFSGPAPERINGRLAM+GFV A+AVE 
Sbjct: 63  QPATPVTPPPAEPKPQPVSTPSPKVSTKFSDVLAFSGPAPERINGRLAMIGFVGAMAVEV 122

Query: 122 AKGQDVLEQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAM 181
           AKGQ V EQI NGGIPWF+GTS +LTLASLIP  +G+SVES SKGFM+S AELWNGRFAM
Sbjct: 123 AKGQGVFEQISNGGIPWFLGTSVVLTLASLIPLFQGISVESKSKGFMSSDAELWNGRFAM 182

Query: 182 LGLVALAFTEYVTGGSLV 192
           LGLVALAFTEYV GG+LV
Sbjct: 183 LGLVALAFTEYVKGGTLV 191

[Close]

BLAST of CmaCh14G017470 vs. TrEMBL
Match: A0A0B2P505_GLYSO (Early light-induced protein, chloroplastic OS=Glycine soja GN=glysoja_015995 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.9e-53
Identity = 124/198 (62.63%), Postives = 142/198 (71.72%), Query Frame = 1


Query: 2   AASAVMQSILV-------SSARQNACRTPANRLLPAAVQPFSRRAANFRVRCTAEEDQ-R 61
           A+S  MQSIL        S +R+N    PA            RR    RVR  AEE+Q  
Sbjct: 3   ASSYAMQSILANPMIRISSGSRENHFGVPAYH---------RRRNVGLRVRSMAEEEQPS 62

Query: 62  EPATPTSVSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEA 121
           +PATP +     P+P P  TPSPK+STK +D+LAFSGPAPERINGRLAM+GFV A+AVE 
Sbjct: 63  QPATPVTPPPAEPKPQPVSTPSPKVSTKFSDVLAFSGPAPERINGRLAMIGFVGAMAVEV 122

Query: 122 AKGQDVLEQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAM 181
           AKGQ V EQI NGGIPWF+GTS +LTLASLIP  +G+SVES SKGFM+S AELWNGRFAM
Sbjct: 123 AKGQGVFEQISNGGIPWFLGTSVVLTLASLIPLFQGISVESKSKGFMSSDAELWNGRFAM 182

Query: 182 LGLVALAFTEYVTGGSLV 192
           LGLVALAFTEYV GG+LV
Sbjct: 183 LGLVALAFTEYVKGGTLV 191

[Close]

BLAST of CmaCh14G017470 vs. TrEMBL
Match: Q850G4_ARAHY (Putative early light induced protein (Fragment) OS=Arachis hypogaea GN=Gsi-39 PE=2 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 6.4e-53
Identity = 118/187 (63.10%), Postives = 140/187 (74.87%), Query Frame = 1


Query: 3   ASAVMQSILVSSARQNACRTPANRL-LPAAVQPFSRRAANFRVRCTAEEDQREPATPTSV 62
           +S  MQSIL S   +   R+  N+  +PA   P  RR A+  VR  AEE+Q+E +T  + 
Sbjct: 4   SSYAMQSILASPMTRTPSRSRVNQFGVPALYMPNMRRNASLSVRSMAEEEQKEQSTEPTS 63

Query: 63  SLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVLE 122
            +  P P P P  SPKMSTK +D+LAFSGPAPERINGRLAM+GFVAALAVE + GQD+L 
Sbjct: 64  PVTPPPPKPQPR-SPKMSTKFSDVLAFSGPAPERINGRLAMIGFVAALAVELSNGQDLLS 123

Query: 123 QIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLVALAF 182
           QI NGGIPWF+GTS +L+LASLIP  +GVSVES S GFM+S AELWNGRFAMLGL+ALAF
Sbjct: 124 QISNGGIPWFLGTSVVLSLASLIPLFQGVSVESKSGGFMSSDAELWNGRFAMLGLIALAF 183

Query: 183 TEYVTGG 189
           TEYV GG
Sbjct: 184 TEYVKGG 189

[Close]

BLAST of CmaCh14G017470 vs. TrEMBL
Match: B2CZY6_CAMSI (Putative cold-inducible protein OS=Camellia sinensis GN=ELIP1 PE=2 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.1e-52
Identity = 114/189 (60.32%), Postives = 138/189 (73.02%), Query Frame = 1


Query: 3   ASAVMQSILVSSARQNACRTPANRLLPAAVQPFSRRAANFRVRCTAEEDQREPATPTSVS 62
           A+  MQSIL         R   ++  P +  P  +R A  +VRC AE+DQ +  TP +  
Sbjct: 2   ATPAMQSILARPVSGVTARARFSQFTPCSYVPRLQRNAGMQVRCMAEDDQNKDVTPITTP 61

Query: 63  LPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVLEQ 122
            P+ QP   P P PK+STK +D+LAFSGPAPERINGRLAM+GFVAA+AVE +KG+DVL Q
Sbjct: 62  PPTSQPISFPPPKPKVSTKFSDVLAFSGPAPERINGRLAMIGFVAAMAVELSKGEDVLAQ 121

Query: 123 IGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLVALAFT 182
           I NGG+PWF GTS +LTLASLIP  +G SVES S+G M+S AELWNGRFAMLGLVALAFT
Sbjct: 122 ISNGGVPWFGGTSIVLTLASLIPLFKGGSVESRSEGIMSSDAELWNGRFAMLGLVALAFT 181

Query: 183 EYVTGGSLV 192
           E+V GG+LV
Sbjct: 182 EFVKGGALV 190

[Close]

BLAST of CmaCh14G017470 vs. TAIR10
Match: AT3G22840.1 (AT3G22840.1 Chlorophyll A-B binding family protein)

HSP 1 Score: 199.1 bits (505), Expect = 2.4e-51
Identity = 115/194 (59.28%), Postives = 136/194 (70.10%), Query Frame = 1


Query: 3   ASAVMQSILVSSARQNACRTPANRLLPAAVQPFSRRAANFRVRCTAE----EDQREPATP 62
           AS  MQS+           T  N+L  A   P  +R     VRC AE     +   PA  
Sbjct: 4   ASFNMQSVFAGGLTTRKINT--NKLFSAGSFPNLKRNYPVGVRCMAEGGPTNEDSSPAPS 63

Query: 63  TSVSLPSPQ-PGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQ 122
           TS + P P+ P P P   PK+STK +D+LAFSGPAPERINGRLAMVGFVAALAVE +KG+
Sbjct: 64  TSAAQPLPKSPSPPPPMKPKVSTKFSDLLAFSGPAPERINGRLAMVGFVAALAVELSKGE 123

Query: 123 DVLEQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLV 182
           +VL QI +GG+ WF+GT+AILTLASL+P  +G+SVES SKG MTS AELWNGRFAMLGLV
Sbjct: 124 NVLAQISDGGVSWFLGTTAILTLASLVPLFKGISVESKSKGIMTSDAELWNGRFAMLGLV 183

Query: 183 ALAFTEYVTGGSLV 192
           ALAFTE+V GG+LV
Sbjct: 184 ALAFTEFVKGGTLV 195

[Close]

BLAST of CmaCh14G017470 vs. TAIR10
Match: AT4G14690.1 (AT4G14690.1 Chlorophyll A-B binding family protein)

HSP 1 Score: 193.4 bits (490), Expect = 1.3e-49
Identity = 111/195 (56.92%), Postives = 136/195 (69.74%), Query Frame = 1


Query: 3   ASAVMQSILVSSARQNACRTPANRLLPAAVQPFSRRAANFRVRCTAE-----EDQREPAT 62
           AS  MQS+  + +     R   N       Q F +R A   VRC A+     ED   P+T
Sbjct: 4   ASFNMQSVFAAPSGVLTTRNIRN-----TNQLFFKRIAPVGVRCMAQGDPIKEDPSVPST 63

Query: 63  PTSVSLPS-PQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKG 122
            TS + P  PQ  P P   PK+STK  D+LAFSGPAPERINGRLAMVGFVAA+A+E +KG
Sbjct: 64  STSATPPQMPQSPPPPVSKPKVSTKFGDLLAFSGPAPERINGRLAMVGFVAAIAMELSKG 123

Query: 123 QDVLEQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGL 182
           ++V  QI +GG+ WF+GT+A+LTLAS++P  +G+  E+ SKGFMTS AELWNGRFAMLGL
Sbjct: 124 ENVFAQISDGGVGWFLGTTALLTLASMVPLFKGIRAEAKSKGFMTSDAELWNGRFAMLGL 183

Query: 183 VALAFTEYVTGGSLV 192
           VALAFTEYVTGG+LV
Sbjct: 184 VALAFTEYVTGGTLV 193

[Close]

BLAST of CmaCh14G017470 vs. NCBI nr
Match: gi|449432666|ref|XP_004134120.1| (PREDICTED: early light-induced protein 1, chloroplastic [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 4.5e-68
Identity = 144/192 (75.00%), Postives = 159/192 (82.81%), Query Frame = 1


Query: 1   MAASAVMQSILVSSARQNACRTPANRLLPAAVQPFSRRAANFRVRCTAEEDQREPATPTS 60
           MAASAVMQSIL ++A +   RT  NRLLPAA++P SR  A FRVRC AEEDQRE A P+S
Sbjct: 1   MAASAVMQSILSTTATRGVYRTTTNRLLPAALRPCSRSTAAFRVRCMAEEDQREQAIPSS 60

Query: 61  VSLPSPQPGPSPTPSPKM-STKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDV 120
           +    P+P PSP+P  K+ STKLTDILAFSGP PERINGRLAM+GFVAALAVE +KGQDV
Sbjct: 61  IPPSPPKPEPSPSPPSKVTSTKLTDILAFSGPGPERINGRLAMIGFVAALAVEVSKGQDV 120

Query: 121 LEQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLVAL 180
            EQI NGGIPWFVGTS +LTLASLIP  +GVS ESNSKG M+S AELWNGRFAMLGLVAL
Sbjct: 121 FEQIANGGIPWFVGTSVVLTLASLIPLFKGVSAESNSKGIMSSNAELWNGRFAMLGLVAL 180

Query: 181 AFTEYVTGGSLV 192
           AFTEYV GGSLV
Sbjct: 181 AFTEYVKGGSLV 192

[Close]

BLAST of CmaCh14G017470 vs. NCBI nr
Match: gi|659076329|ref|XP_008438620.1| (PREDICTED: early light-induced protein 1, chloroplastic [Cucumis melo])

HSP 1 Score: 252.7 bits (644), Expect = 5.2e-64
Identity = 139/192 (72.40%), Postives = 154/192 (80.21%), Query Frame = 1


Query: 1   MAASAVMQSILVSSARQNACRTPANRLLPAAVQPFSRRAANFRVRCTAEEDQREPATPTS 60
           MAASAVMQSI  S+A +   RT  NRLLPAAV+  SR    FRVRCT EEDQRE A P+S
Sbjct: 1   MAASAVMQSIPSSTASRGVYRTTTNRLLPAAVRLCSRNTGAFRVRCTGEEDQREQAIPSS 60

Query: 61  VSLPSPQPGPSPTPSPKM-STKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDV 120
           +    P+  P+P+ + K+ STK TDILAFSGP PERINGRLAM+GFVAALAVE +KGQDV
Sbjct: 61  IPPSPPKLEPAPSSTSKVTSTKFTDILAFSGPGPERINGRLAMIGFVAALAVEVSKGQDV 120

Query: 121 LEQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLVAL 180
            EQI NGGIPWFVGTS +LTLASLIP  +GVS ESNSKG M+S AELWNGRFAMLGLVAL
Sbjct: 121 FEQIANGGIPWFVGTSVVLTLASLIPLFKGVSAESNSKGIMSSNAELWNGRFAMLGLVAL 180

Query: 181 AFTEYVTGGSLV 192
           AFTEYV GGSLV
Sbjct: 181 AFTEYVKGGSLV 192

[Close]

BLAST of CmaCh14G017470 vs. NCBI nr
Match: gi|1012243693|ref|XP_015941588.1| (PREDICTED: early light-induced protein, chloroplastic [Arachis duranensis])

HSP 1 Score: 218.4 bits (555), Expect = 1.1e-53
Identity = 120/190 (63.16%), Postives = 143/190 (75.26%), Query Frame = 1


Query: 3   ASAVMQSILVSSARQNACRTPANRL-LPAAVQPFSRRAANFRVRCTAEEDQREPATPTSV 62
           +S  MQSIL S   +   R+  N+  +PA   P  RR A+  VR  AEE+Q+E +T  + 
Sbjct: 4   SSYAMQSILASPMTRTPSRSRVNQFGVPALYMPNMRRNASLSVRSMAEEEQKEQSTEPTS 63

Query: 63  SLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVLE 122
            +  P P P P  SPKMSTK +D+LAFSGPAPERINGRLAM+GFVAALAVE + GQD+L 
Sbjct: 64  PVTPPPPKPQPR-SPKMSTKFSDVLAFSGPAPERINGRLAMIGFVAALAVELSNGQDLLS 123

Query: 123 QIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLVALAF 182
           QI NGGIPWF+GTS +L+LASLIP  +GVSVES S GFM+S AELWNGRFAMLGL+ALAF
Sbjct: 124 QISNGGIPWFLGTSVVLSLASLIPLFQGVSVESKSGGFMSSDAELWNGRFAMLGLIALAF 183

Query: 183 TEYVTGGSLV 192
           TEYV GG+LV
Sbjct: 184 TEYVKGGTLV 192

[Close]

BLAST of CmaCh14G017470 vs. NCBI nr
Match: gi|571480700|ref|XP_006588384.1| (PREDICTED: uncharacterized protein LOC100306375 isoform X1 [Glycine max])

HSP 1 Score: 217.6 bits (553), Expect = 1.9e-53
Identity = 124/198 (62.63%), Postives = 143/198 (72.22%), Query Frame = 1


Query: 2   AASAVMQSILV-------SSARQNACRTPANRLLPAAVQPFSRRAANFRVRCTAEEDQ-R 61
           A+S  MQSIL        S +R+N    PA  +         RR    RVR  AEE+Q  
Sbjct: 3   ASSYAMQSILANPMIRISSGSRENHFGVPAYHM---------RRNVGLRVRSMAEEEQPS 62

Query: 62  EPATPTSVSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEA 121
           +PATP +     P+P P  TPSPK+STK +D+LAFSGPAPERINGRLAM+GFV A+AVE 
Sbjct: 63  QPATPVTPPPAEPKPQPVSTPSPKVSTKFSDVLAFSGPAPERINGRLAMIGFVGAMAVEV 122

Query: 122 AKGQDVLEQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAM 181
           AKGQ V EQI NGGIPWF+GTS +LTLASLIP  +G+SVES SKGFM+S AELWNGRFAM
Sbjct: 123 AKGQGVFEQISNGGIPWFLGTSVVLTLASLIPLFQGISVESKSKGFMSSDAELWNGRFAM 182

Query: 182 LGLVALAFTEYVTGGSLV 192
           LGLVALAFTEYV GG+LV
Sbjct: 183 LGLVALAFTEYVKGGTLV 191

[Close]

BLAST of CmaCh14G017470 vs. NCBI nr
Match: gi|734317847|gb|KHN02753.1| (Early light-induced protein, chloroplastic [Glycine soja])

HSP 1 Score: 216.5 bits (550), Expect = 4.1e-53
Identity = 124/198 (62.63%), Postives = 142/198 (71.72%), Query Frame = 1


Query: 2   AASAVMQSILV-------SSARQNACRTPANRLLPAAVQPFSRRAANFRVRCTAEEDQ-R 61
           A+S  MQSIL        S +R+N    PA            RR    RVR  AEE+Q  
Sbjct: 3   ASSYAMQSILANPMIRISSGSRENHFGVPAYH---------RRRNVGLRVRSMAEEEQPS 62

Query: 62  EPATPTSVSLPSPQPGPSPTPSPKMSTKLTDILAFSGPAPERINGRLAMVGFVAALAVEA 121
           +PATP +     P+P P  TPSPK+STK +D+LAFSGPAPERINGRLAM+GFV A+AVE 
Sbjct: 63  QPATPVTPPPAEPKPQPVSTPSPKVSTKFSDVLAFSGPAPERINGRLAMIGFVGAMAVEV 122

Query: 122 AKGQDVLEQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAM 181
           AKGQ V EQI NGGIPWF+GTS +LTLASLIP  +G+SVES SKGFM+S AELWNGRFAM
Sbjct: 123 AKGQGVFEQISNGGIPWFLGTSVVLTLASLIPLFQGISVESKSKGFMSSDAELWNGRFAM 182

Query: 182 LGLVALAFTEYVTGGSLV 192
           LGLVALAFTEYV GG+LV
Sbjct: 183 LGLVALAFTEYVKGGTLV 191

The following BLAST results are available for this feature:

BLAST of CmaCh14G017470 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ELIP1_ARATH	4.3e-50	59.28	Early light-induced protein 1, chloroplastic OS=Arabidopsis thaliana GN=ELIP1 PE...	[more]
ELIP2_ARATH	2.3e-48	56.92	Early light-induced protein 2, chloroplastic OS=Arabidopsis thaliana GN=ELIP2 PE...	[more]
ELI_PEA	1.3e-46	54.82	Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1	[more]
DS22_CRAPL	1.1e-34	47.98	Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum G...	[more]
ELI5_HORVU	7.3e-34	52.76	High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum...	[more]

BLAST of CmaCh14G017470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA49_CUCSA	3.2e-68	75.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G145780 PE=4 SV=1	[more]
I1LE02_SOYBN	1.3e-53	62.63	Uncharacterized protein OS=Glycine max GN=GLYMA_10G243800 PE=4 SV=1	[more]
A0A0B2P505_GLYSO	2.9e-53	62.63	Early light-induced protein, chloroplastic OS=Glycine soja GN=glysoja_015995 PE=...	[more]
Q850G4_ARAHY	6.4e-53	63.10	Putative early light induced protein (Fragment) OS=Arachis hypogaea GN=Gsi-39 PE...	[more]
B2CZY6_CAMSI	1.1e-52	60.32	Putative cold-inducible protein OS=Camellia sinensis GN=ELIP1 PE=2 SV=1	[more]

BLAST of CmaCh14G017470 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22840.1	2.4e-51	59.28	Chlorophyll A-B binding family protein	[more]
AT4G14690.1	1.3e-49	56.92	Chlorophyll A-B binding family protein	[more]

BLAST of CmaCh14G017470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432666\|ref\|XP_004134120.1\|	4.5e-68	75.00	PREDICTED: early light-induced protein 1, chloroplastic [Cucumis sativus]	[more]
gi\|659076329\|ref\|XP_008438620.1\|	5.2e-64	72.40	PREDICTED: early light-induced protein 1, chloroplastic [Cucumis melo]	[more]
gi\|1012243693\|ref\|XP_015941588.1\|	1.1e-53	63.16	PREDICTED: early light-induced protein, chloroplastic [Arachis duranensis]	[more]
gi\|571480700\|ref\|XP_006588384.1\|	1.9e-53	62.63	PREDICTED: uncharacterized protein LOC100306375 isoform X1 [Glycine max]	[more]
gi\|734317847\|gb\|KHN02753.1\|	4.1e-53	62.63	Early light-induced protein, chloroplastic [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh14G017470.1	CmaCh14G017470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 91..134 score: 2.
IPR023329	Chlorophyll a/b binding protein domain	unknown	SSF103511	Chlorophyll a-b binding protein	coord: 70..188 score: 1.7
None	No IPR available	GENE3D	G3DSA:1.20.1620.10		coord: 162..189 score: 8.4E-5coord: 94..153 score: 2.
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 30..191 score: 5.2
None	No IPR available	PANTHER	PTHR14154:SF5	EARLY LIGHT-INDUCED PROTEIN 1, CHLOROPLASTIC-RELATED	coord: 30..191 score: 5.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh14G017470	Cucsa.254640	Cucumber (Gy14) v1	cgycmaB0709
CmaCh14G017470	Cla021590	Watermelon (97103) v1	cmawmB242
CmaCh14G017470	Csa3G145780	Cucumber (Chinese Long) v2	cmacuB253
CmaCh14G017470	MELO3C006499	Melon (DHL92) v3.5.1	cmameB242
CmaCh14G017470	ClCG05G004850	Watermelon (Charleston Gray)	cmawcgB233
CmaCh14G017470	CSPI03G12760	Wild cucumber (PI 183967)	cmacpiB255
CmaCh14G017470	CmoCh06G013820	Cucurbita moschata (Rifu)	cmacmoB271
CmaCh14G017470	CmoCh14G017840	Cucurbita moschata (Rifu)	cmacmoB245
CmaCh14G017470	Lsi05G016390	Bottle gourd (USVL1VR-Ls)	cmalsiB245
CmaCh14G017470	Cp4.1LG03g10370	Cucurbita pepo (Zucchini)	cmacpeB283
CmaCh14G017470	Cp4.1LG08g03840	Cucurbita pepo (Zucchini)	cmacpeB292
CmaCh14G017470	MELO3C006499.2	Melon (DHL92) v3.6.1	cmamedB273
CmaCh14G017470	CsaV3_3G012890	Cucumber (Chinese Long) v3	cmacucB0291
CmaCh14G017470	Cla97C05G085940	Watermelon (97103) v2	cmawmbB263
CmaCh14G017470	Bhi01G000550	Wax gourd	cmawgoB0328
CmaCh14G017470	CsGy3G012910	Cucumber (Gy14) v2	cgybcmaB318
CmaCh14G017470	Carg06172	Silver-seed gourd	carcmaB1320
CmaCh14G017470	Carg23487	Silver-seed gourd	carcmaB1174

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh14G017470	CmaCh06G013690	Cucurbita maxima (Rimu)	cmacmaB284

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh14G017470	Watermelon (97103) v2	cmawmbB266
CmaCh14G017470	Watermelon (97103) v2	cmawmbB273
CmaCh14G017470	Wax gourd	cmawgoB0310
CmaCh14G017470	Wax gourd	cmawgoB0344
CmaCh14G017470	Cucurbita maxima (Rimu)	cmacmaB249
CmaCh14G017470	Cucurbita maxima (Rimu)	cmacmaB260
CmaCh14G017470	Cucurbita maxima (Rimu)	cmacmaB267
CmaCh14G017470	Cucurbita maxima (Rimu)	cmacmaB296
CmaCh14G017470	Cucumber (Gy14) v1	cgycmaB1073
CmaCh14G017470	Cucurbita moschata (Rifu)	cmacmoB251
CmaCh14G017470	Cucurbita moschata (Rifu)	cmacmoB279
CmaCh14G017470	Wild cucumber (PI 183967)	cmacpiB240
CmaCh14G017470	Cucumber (Chinese Long) v2	cmacuB238
CmaCh14G017470	Melon (DHL92) v3.5.1	cmameB235
CmaCh14G017470	Watermelon (Charleston Gray)	cmawcgB235
CmaCh14G017470	Watermelon (Charleston Gray)	cmawcgB240
CmaCh14G017470	Watermelon (97103) v1	cmawmB236
CmaCh14G017470	Watermelon (97103) v1	cmawmB250
CmaCh14G017470	Cucurbita pepo (Zucchini)	cmacpeB259
CmaCh14G017470	Cucurbita pepo (Zucchini)	cmacpeB266
CmaCh14G017470	Cucurbita pepo (Zucchini)	cmacpeB290
CmaCh14G017470	Bottle gourd (USVL1VR-Ls)	cmalsiB225
CmaCh14G017470	Bottle gourd (USVL1VR-Ls)	cmalsiB247
CmaCh14G017470	Cucumber (Gy14) v2	cgybcmaB188
CmaCh14G017470	Melon (DHL92) v3.6.1	cmamedB267
CmaCh14G017470	Silver-seed gourd	carcmaB0313
CmaCh14G017470	Silver-seed gourd	carcmaB0453
CmaCh14G017470	Silver-seed gourd	carcmaB1075
CmaCh14G017470	Cucumber (Chinese Long) v3	cmacucB0277
CmaCh14G017470	Cucumber (Chinese Long) v3	cmacucB0278