Carg06172-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06172-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Early light-induced protein
Location	Cucurbita_argyrosperma_scaffold_016 : 99874 .. 101210 (-)
Sequence length	1123

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTCTTCTGGTGAATTAGGAAGCCACGCCATTACACTTTTTCATGTGTGGACAATCCAACCCACGTGACTCTCTTATTTGGCGATGAATGGAAACTGCTGACGTGGAACCTAAGTATCCACCACTCCCTGCCCCATCCTCCGTTATATAAACCCCGCGGAGGTTCTCCTCTACATCATCATAGAAGCGCTCCACCGCCAATACGATAATTTCCATCGCTCTTTGATCGATCACTGCCCTTAGTCTCCGCCGTTCCTTTGCTCCGTTGACATTGAACCCCCAGGAACTGAGCGAAATGGCCACTTCTGCATTATTACAAGCCATTCCGGCGAGATCGGCATCTCGAACTACCCTTAGGACACCAACGAACCGGTTGTGTTCCAGGAGGACGGCCTCCTTCCGTGTGCGATGCACGGCGGAGGTAATCATTATTTTGTCTTCACTTTTAATCTTTGTTTATACAACCTAGGGCTTAATGTATGTCTAAATCTGTTTATTCGACTGGACTCTCAGGAGGAGCAGAGAGAGCAAGCGATTCCTACACCAGCTCCACCGACGTCAAATCCGTCCCCTCCGCCACCGTCTCCTAAGCCGAAGGTAAACAATCCGTTTACATCCACCAGCCGTTCTCAATCGACGGATCGAAACGTAACAGATCGTAGATGAACATTGTCTTTAAATATCATCGTTAATTTCGAATCTGATAATATGATCCTCAGGTGAGCACGAAATTCTCGGACGTCCTCGCATTCAGCGGGCCAGCGCCAGAGAGAATCAACGGGCGGCTAGCAATGATAGGCTTTGTGGCCGCTGTAGCGGTTGAGGCATGGAAAGGTCAGGATGTATTGGAGCAAATAGGCAACGGAGGAATTCCATGGTTTGTGGGAACAAGCGTGGTTTTGACACTGGCATCGCTGATTCCGCTATTTAAAGGGGTGAGTGTGGAGTCTAAGTCGAAGGGGCTTATGACATCCGACGCGGAGCTGTGGAATGGGAGGTTTGCGATGTTGGGGCTCGTAGCTTTGGCCTTCACTGAATTTGTCAAGGGTGGAAGCCTCGTGTAGATTGTAGTTCTGAGATGTAGATTCGATGTCTCTAAGAGAACAACGAATATGTTACTTAATAGTTTTCTGTAACAATGATTATTAGTAATACTTCTTCGTTTGCCTATATGTTATTTTTGTGTTTCTAATTAATTATGTGTACCAATAGCTATTAGTGCACTAATTAACATTTAATTTAAACCTATTAGGACTCACTATATTATAGGAATAATTATGAACCCATCAACTCCATTTGAATCTTTGTAATAATGATATACACATTATAAGATGTCT

mRNA sequence

GTTTCTTCTGGTGAATTAGGAAGCCACGCCATTACACTTTTTCATGTGTGGACAATCCAACCCACGTGACTCTCTTATTTGGCGATGAATGGAAACTGCTGACGTGGAACCTAAGTATCCACCACTCCCTGCCCCATCCTCCGTTATATAAACCCCGCGGAGGTTCTCCTCTACATCATCATAGAAGCGCTCCACCGCCAATACGATAATTTCCATCGCTCTTTGATCGATCACTGCCCTTAGTCTCCGCCGTTCCTTTGCTCCGTTGACATTGAACCCCCAGGAACTGAGCGAAATGGCCACTTCTGCATTATTACAAGCCATTCCGGCGAGATCGGCATCTCGAACTACCCTTAGGACACCAACGAACCGGTTGTGTTCCAGGAGGACGGCCTCCTTCCGTGTGCGATGCACGGCGGAGGAGGAGCAGAGAGAGCAAGCGATTCCTACACCAGCTCCACCGACGTCAAATCCGTCCCCTCCGCCACCGTCTCCTAAGCCGAAGGTGAGCACGAAATTCTCGGACGTCCTCGCATTCAGCGGGCCAGCGCCAGAGAGAATCAACGGGCGGCTAGCAATGATAGGCTTTGTGGCCGCTGTAGCGGTTGAGGCATGGAAAGGTCAGGATGTATTGGAGCAAATAGGCAACGGAGGAATTCCATGGTTTGTGGGAACAAGCGTGGTTTTGACACTGGCATCGCTGATTCCGCTATTTAAAGGGGTGAGTGTGGAGTCTAAGTCGAAGGGGCTTATGACATCCGACGCGGAGCTGTGGAATGGGAGGTTTGCGATGTTGGGGCTCGTAGCTTTGGCCTTCACTGAATTTGTCAAGGGTGGAAGCCTCGTGTAGATTGTAGTTCTGAGATGTAGATTCGATGTCTCTAAGAGAACAACGAATATGTTACTTAATAGTTTTCTGTAACAATGATTATTAGTAATACTTCTTCGTTTGCCTATATGTTATTTTTGTGTTTCTAATTAATTATGTGTACCAATAGCTATTAGTGCACTAATTAACATTTAATTTAAACCTATTAGGACTCACTATATTATAGGAATAATTATGAACCCATCAACTCCATTTGAATCTTTGTAATAATGATATACACATTATAAGATGTCT

Coding sequence (CDS)

ATGGCCACTTCTGCATTATTACAAGCCATTCCGGCGAGATCGGCATCTCGAACTACCCTTAGGACACCAACGAACCGGTTGTGTTCCAGGAGGACGGCCTCCTTCCGTGTGCGATGCACGGCGGAGGAGGAGCAGAGAGAGCAAGCGATTCCTACACCAGCTCCACCGACGTCAAATCCGTCCCCTCCGCCACCGTCTCCTAAGCCGAAGGTGAGCACGAAATTCTCGGACGTCCTCGCATTCAGCGGGCCAGCGCCAGAGAGAATCAACGGGCGGCTAGCAATGATAGGCTTTGTGGCCGCTGTAGCGGTTGAGGCATGGAAAGGTCAGGATGTATTGGAGCAAATAGGCAACGGAGGAATTCCATGGTTTGTGGGAACAAGCGTGGTTTTGACACTGGCATCGCTGATTCCGCTATTTAAAGGGGTGAGTGTGGAGTCTAAGTCGAAGGGGCTTATGACATCCGACGCGGAGCTGTGGAATGGGAGGTTTGCGATGTTGGGGCTCGTAGCTTTGGCCTTCACTGAATTTGTCAAGGGTGGAAGCCTCGTGTAG

Protein sequence

MATSALLQAIPARSASRTTLRTPTNRLCSRRTASFRVRCTAEEEQREQAIPTPAPPTSNPSPPPPSPKPKVSTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKGGSLV

Homology

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BLAST of Carg06172-RA vs. NCBI nr
Match: XP_022939396.1 (early light-induced protein 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 280.8 bits (717), Expect = 3.3e-72
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MATSALLQAIPARSASRTTLRTPTNRLCSRRTASFRVRCTAXXXXXXXXXXXXXXXXXXX 60
           MATSALLQAIPARSASRTTLRTPTNRLCSRRTASFRVRCTAXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MATSALLQAIPARSASRTTLRTPTNRLCSRRTASFRVRCTAXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGG 120
           XXXXXXXXXXXXTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGG
Sbjct: 61  XXXXXXXXXXXXTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGG 120

Query: 121 IPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKG 180
           IPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKG
Sbjct: 121 IPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKG 180

Query: 181 GSLV 185
           GSLV
Sbjct: 181 GSLV 184

[Close]

BLAST of Carg06172-RA vs. NCBI nr
Match: XP_022974396.1 (early light-induced protein 1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 275.4 bits (703), Expect = 1.4e-70
Identity = 181/184 (98.37%), Postives = 181/184 (98.37%), Query Frame = 0


Query: 1   MATSALLQAIPARSASRTTLRTPTNRLCSRRTASFRVRCTAXXXXXXXXXXXXXXXXXXX 60
           MATSALLQAIP  SASRTT RTPTNRLCSRRTASFRVRCTAXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MATSALLQAIPVSSASRTTFRTPTNRLCSRRTASFRVRCTAXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGG 120
           XXXXXXXXXXXXTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGG
Sbjct: 61  XXXXXXXXXXXXTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGG 120

Query: 121 IPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKG 180
           IPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKG
Sbjct: 121 IPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKG 180

Query: 181 GSLV 185
           GSLV
Sbjct: 181 GSLV 184

[Close]

BLAST of Carg06172-RA vs. NCBI nr
Match: XP_023539090.1 (early light-induced protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.8 bits (678), Expect = 1.1e-67
Identity = 178/184 (96.74%), Postives = 178/184 (96.74%), Query Frame = 0


Query: 1   MATSALLQAIPARSASRTTLRTPTNRLCSRRTASFRVRCTAXXXXXXXXXXXXXXXXXXX 60
           MATSALLQAIPARSASRTT RTP   LCSRRTA FRVRCTA XXXXXXXXXXXXXXXXXX
Sbjct: 1   MATSALLQAIPARSASRTTFRTP---LCSRRTAFFRVRCTAEXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGG 120
           XXXXXXXXXXXXTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGG
Sbjct: 61  XXXXXXXXXXXXTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGG 120

Query: 121 IPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKG 180
           IPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKG
Sbjct: 121 IPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKG 180

Query: 181 GSLV 185
           GSLV
Sbjct: 181 GSLV 181

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BLAST of Carg06172-RA vs. NCBI nr
Match: XP_008438620.1 (PREDICTED: early light-induced protein 1, chloroplastic [Cucumis melo])

HSP 1 Score: 219.9 bits (559), Expect = 7.0e-54
Identity = 124/192 (64.58%), Postives = 137/192 (71.35%), Query Frame = 0


Query: 1   MATSALLQAIPARSASRTTLRTPTN-------RLCSRRTASFRVRCTA-XXXXXXXXXXX 60
           MA SA++Q+IP+ +ASR   RT TN       RLCSR T +FRVRCT             
Sbjct: 1   MAASAVMQSIPSSTASRGVYRTTTNRLLPAAVRLCSRNTGAFRVRCTGEEDQREQAIPSS 60

Query: 61  XXXXXXXXXXXXXXXXXXXXTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDV 120
                               TKF+D+LAFSGP PERINGRLAMIGFVAA+AVE  KGQDV
Sbjct: 61  IPPSPPKLEPAPSSTSKVTSTKFTDILAFSGPGPERINGRLAMIGFVAALAVEVSKGQDV 120

Query: 121 LEQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVAL 180
            EQI NGGIPWFVGTSVVLTLASLIPLFKGVS ES SKG+M+S+AELWNGRFAMLGLVAL
Sbjct: 121 FEQIANGGIPWFVGTSVVLTLASLIPLFKGVSAESNSKGIMSSNAELWNGRFAMLGLVAL 180

Query: 181 AFTEFVKGGSLV 185
           AFTE+VKGGSLV
Sbjct: 181 AFTEYVKGGSLV 192

[Close]

BLAST of Carg06172-RA vs. NCBI nr
Match: XP_022955473.1 (early light-induced protein 1, chloroplastic-like [Cucurbita moschata] >XP_022955474.1 early light-induced protein 1, chloroplastic-like [Cucurbita moschata] >XP_022955475.1 early light-induced protein 1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 217.2 bits (552), Expect = 4.5e-53
Identity = 140/191 (73.30%), Postives = 152/191 (79.58%), Query Frame = 0


Query: 1   MATSALLQAIPARSASRTTLRTPTNRLC-------SRRTASFRVRCTAXXXXXXXXXXXX 60
           MA SA++Q+I A SASR   RTP NRL        SRR A+FRVRCTA            
Sbjct: 1   MAASAVMQSILASSASRNACRTPANRLLPAAVRPFSRRAANFRVRCTAEEDQREPATPSS 60

Query: 61  XXXXXXXXXXXXXXXXXXXTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVL 120
            XXXXXXXXXXXXXXXXXX K +D+LAFSGPAPERINGRLAM+GFVAA+AVEA KGQDVL
Sbjct: 61  VXXXXXXXXXXXXXXXXXXXKLTDILAFSGPAPERINGRLAMVGFVAALAVEAAKGQDVL 120

Query: 121 EQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALA 180
           EQIGNGGIPWFVGTS +LTLASLIP  +GVSVES SKG MTS AELWNGRFAMLGL+ALA
Sbjct: 121 EQIGNGGIPWFVGTSAILTLASLIPFIRGVSVESNSKGFMTSKAELWNGRFAMLGLLALA 180

Query: 181 FTEFVKGGSLV 185
           FTE+V GGSLV
Sbjct: 181 FTEYVTGGSLV 191

[Close]

BLAST of Carg06172-RA vs. TAIR10
Match: AT3G22840.1 (Chlorophyll A-B binding family protein)

HSP 1 Score: 191.0 bits (484), Expect = 6.3e-49
Identity = 92/112 (82.14%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 73  TKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGGIPWFVGTSVVLT 132
           TKFSD+LAFSGPAPERINGRLAM+GFVAA+AVE  KG++VL QI +GG+ WF+GT+ +LT
Sbjct: 84  TKFSDLLAFSGPAPERINGRLAMVGFVAALAVELSKGENVLAQISDGGVSWFLGTTAILT 143

Query: 133 LASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKGGSLV 185
           LASL+PLFKG+SVESKSKG+MTSDAELWNGRFAMLGLVALAFTEFVKGG+LV
Sbjct: 144 LASLVPLFKGISVESKSKGIMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 195

[Close]

BLAST of Carg06172-RA vs. TAIR10
Match: AT4G14690.1 (Chlorophyll A-B binding family protein)

HSP 1 Score: 176.8 bits (447), Expect = 1.2e-44
Identity = 83/112 (74.11%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 73  TKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGGIPWFVGTSVVLT 132
           TKF D+LAFSGPAPERINGRLAM+GFVAA+A+E  KG++V  QI +GG+ WF+GT+ +LT
Sbjct: 82  TKFGDLLAFSGPAPERINGRLAMVGFVAAIAMELSKGENVFAQISDGGVGWFLGTTALLT 141

Query: 133 LASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKGGSLV 185
           LAS++PLFKG+  E+KSKG MTSDAELWNGRFAMLGLVALAFTE+V GG+LV
Sbjct: 142 LASMVPLFKGIRAEAKSKGFMTSDAELWNGRFAMLGLVALAFTEYVTGGTLV 193

[Close]

BLAST of Carg06172-RA vs. Swiss-Prot
Match: sp|P93735|ELIP1_ARATH (Early light-induced protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ELIP1 PE=1 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.1e-47
Identity = 92/112 (82.14%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 73  TKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGGIPWFVGTSVVLT 132
           TKFSD+LAFSGPAPERINGRLAM+GFVAA+AVE  KG++VL QI +GG+ WF+GT+ +LT
Sbjct: 84  TKFSDLLAFSGPAPERINGRLAMVGFVAALAVELSKGENVLAQISDGGVSWFLGTTAILT 143

Query: 133 LASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKGGSLV 185
           LASL+PLFKG+SVESKSKG+MTSDAELWNGRFAMLGLVALAFTEFVKGG+LV
Sbjct: 144 LASLVPLFKGISVESKSKGIMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 195

[Close]

BLAST of Carg06172-RA vs. Swiss-Prot
Match: sp|Q94K66|ELIP2_ARATH (Early light-induced protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ELIP2 PE=1 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.2e-43
Identity = 83/112 (74.11%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 73  TKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGGIPWFVGTSVVLT 132
           TKF D+LAFSGPAPERINGRLAM+GFVAA+A+E  KG++V  QI +GG+ WF+GT+ +LT
Sbjct: 82  TKFGDLLAFSGPAPERINGRLAMVGFVAAIAMELSKGENVFAQISDGGVGWFLGTTALLT 141

Query: 133 LASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKGGSLV 185
           LAS++PLFKG+  E+KSKG MTSDAELWNGRFAMLGLVALAFTE+V GG+LV
Sbjct: 142 LASMVPLFKGIRAEAKSKGFMTSDAELWNGRFAMLGLVALAFTEYVTGGTLV 193

[Close]

BLAST of Carg06172-RA vs. Swiss-Prot
Match: sp|P11432|ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 4.9e-43
Identity = 87/112 (77.68%), Postives = 99/112 (88.39%), Query Frame = 0


Query: 73  TKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGGIPWFVGTSVVLT 132
           TKFSD++AFSGPAPERINGRLAMIGFVAA+ VE  KGQ + EQ+  GG+ WF+GTSV+L+
Sbjct: 85  TKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLS 144

Query: 133 LASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKGGSLV 185
           LASLIP F+GVSVESKSK +M+SDAE WNGR AMLGLVALAFTEFVKG SLV
Sbjct: 145 LASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196

[Close]

BLAST of Carg06172-RA vs. Swiss-Prot
Match: sp|Q01931|DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum OX=4153 GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.5e-34
Identity = 70/108 (64.81%), Postives = 87/108 (80.56%), Query Frame = 0


Query: 77  DVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGGIPWFVGTSVVLTLASL 136
           D+ +F G APERINGR AMIGFVAAV VE   G+DV  Q+ NGG+ WF+ TS VL LA+L
Sbjct: 90  DLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATL 149

Query: 137 IPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKGGSLV 185
           IP+++G+S E+K+ G   SDAE+WNGRFAM+GLVALAFTE+VKGG L+
Sbjct: 150 IPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197

[Close]

BLAST of Carg06172-RA vs. Swiss-Prot
Match: sp|P14895|ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.1e-33
Identity = 71/110 (64.55%), Postives = 90/110 (81.82%), Query Frame = 0


Query: 77  DVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIG--NGGIPWFVGTSVVLTLA 136
           D LAFSGPAPERINGRLAM+GFVAA++VEA +G  +L+Q+G  + G+ WF+ T+ V ++A
Sbjct: 120 DALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVA 179

Query: 137 SLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKGGSLV 185
           SL+PL +G SVESKS G+ ++DAELWNGRFAMLGLVALA TEF+ G   V
Sbjct: 180 SLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229

[Close]

BLAST of Carg06172-RA vs. TrEMBL
Match: tr|A0A1S3AXH6|A0A1S3AXH6_CUCME (early light-induced protein 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483676 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 4.6e-54
Identity = 124/192 (64.58%), Postives = 137/192 (71.35%), Query Frame = 0


Query: 1   MATSALLQAIPARSASRTTLRTPTN-------RLCSRRTASFRVRCTA-XXXXXXXXXXX 60
           MA SA++Q+IP+ +ASR   RT TN       RLCSR T +FRVRCT             
Sbjct: 1   MAASAVMQSIPSSTASRGVYRTTTNRLLPAAVRLCSRNTGAFRVRCTGEEDQREQAIPSS 60

Query: 61  XXXXXXXXXXXXXXXXXXXXTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDV 120
                               TKF+D+LAFSGP PERINGRLAMIGFVAA+AVE  KGQDV
Sbjct: 61  IPPSPPKLEPAPSSTSKVTSTKFTDILAFSGPGPERINGRLAMIGFVAALAVEVSKGQDV 120

Query: 121 LEQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVAL 180
            EQI NGGIPWFVGTSVVLTLASLIPLFKGVS ES SKG+M+S+AELWNGRFAMLGLVAL
Sbjct: 121 FEQIANGGIPWFVGTSVVLTLASLIPLFKGVSAESNSKGIMSSNAELWNGRFAMLGLVAL 180

Query: 181 AFTEFVKGGSLV 185
           AFTE+VKGGSLV
Sbjct: 181 AFTEYVKGGSLV 192

[Close]

BLAST of Carg06172-RA vs. TrEMBL
Match: tr|A0A0A0LA49|A0A0A0LA49_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G145780 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 5.7e-52
Identity = 139/192 (72.40%), Postives = 153/192 (79.69%), Query Frame = 0


Query: 1   MATSALLQAIPARSASRTTLRTPTNRL-------CSRRTASFRVRCTA-XXXXXXXXXXX 60
           MA SA++Q+I + +A+R   RT TNRL       CSR TA+FRVRC A            
Sbjct: 1   MAASAVMQSILSTTATRGVYRTTTNRLLPAALRPCSRSTAAFRVRCMAEEDQREQAIPSS 60

Query: 61  XXXXXXXXXXXXXXXXXXXXTKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDV 120
           XXXXXXXXXXXXXXXXX   TK +D+LAFSGP PERINGRLAMIGFVAA+AVE  KGQDV
Sbjct: 61  XXXXXXXXXXXXXXXXXVTSTKLTDILAFSGPGPERINGRLAMIGFVAALAVEVSKGQDV 120

Query: 121 LEQIGNGGIPWFVGTSVVLTLASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVAL 180
            EQI NGGIPWFVGTSVVLTLASLIPLFKGVS ES SKG+M+S+AELWNGRFAMLGLVAL
Sbjct: 121 FEQIANGGIPWFVGTSVVLTLASLIPLFKGVSAESNSKGIMSSNAELWNGRFAMLGLVAL 180

Query: 181 AFTEFVKGGSLV 185
           AFTE+VKGGSLV
Sbjct: 181 AFTEYVKGGSLV 192

[Close]

BLAST of Carg06172-RA vs. TrEMBL
Match: tr|A0A2P5FWA6|A0A2P5FWA6_9ROSA (Chlorophyll A-B binding protein OS=Trema orientalis OX=63057 GN=TorRG33x02_018670 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.9e-47
Identity = 99/112 (88.39%), Postives = 105/112 (93.75%), Query Frame = 0


Query: 73  TKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGGIPWFVGTSVVLT 132
           TKFSDVLAFSGPAPERINGRLAM+GFVAA+AVE  KGQDV  QI NGGI WFVGTS+VLT
Sbjct: 81  TKFSDVLAFSGPAPERINGRLAMVGFVAAMAVELSKGQDVFAQISNGGISWFVGTSIVLT 140

Query: 133 LASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKGGSLV 185
           LASL+PLFKGVSVESKS GLMTSDAELWNGRFAMLGLVALAFTE+VKGG+LV
Sbjct: 141 LASLVPLFKGVSVESKSNGLMTSDAELWNGRFAMLGLVALAFTEYVKGGTLV 192

[Close]

BLAST of Carg06172-RA vs. TrEMBL
Match: tr|A0A151U6R7|A0A151U6R7_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_007678 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.9e-47
Identity = 99/112 (88.39%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 73  TKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGGIPWFVGTSVVLT 132
           TKFSDVLAFSGPAPERINGRLAMIGFVAA+AVE  KGQ V EQI NGGIPWF+GTSVVLT
Sbjct: 52  TKFSDVLAFSGPAPERINGRLAMIGFVAAMAVEVAKGQGVFEQISNGGIPWFLGTSVVLT 111

Query: 133 LASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKGGSLV 185
           LASLIPLF+GVSVESKSKG M+SDAELWNGRFAMLGL+ALAFTE+VKGG+LV
Sbjct: 112 LASLIPLFQGVSVESKSKGFMSSDAELWNGRFAMLGLIALAFTEYVKGGTLV 163

[Close]

BLAST of Carg06172-RA vs. TrEMBL
Match: tr|I1NGK2|I1NGK2_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_20G150600 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 3.2e-47
Identity = 99/112 (88.39%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 73  TKFSDVLAFSGPAPERINGRLAMIGFVAAVAVEAWKGQDVLEQIGNGGIPWFVGTSVVLT 132
           TKFSDVLAFSGPAPERINGRLAMIGFVAA+AVE  KGQ VLEQI NGGIPWF+GTSVVLT
Sbjct: 81  TKFSDVLAFSGPAPERINGRLAMIGFVAAMAVEVAKGQGVLEQISNGGIPWFLGTSVVLT 140

Query: 133 LASLIPLFKGVSVESKSKGLMTSDAELWNGRFAMLGLVALAFTEFVKGGSLV 185
           LASLIPLF+GVSVESKSKG M+SDAELWNGRFAMLGL+ALAFTE+VKG +LV
Sbjct: 141 LASLIPLFQGVSVESKSKGFMSSDAELWNGRFAMLGLIALAFTEYVKGSTLV 192

The following BLAST results are available for this feature:

BLAST of Carg06172-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939396.1	3.3e-72	100.00	early light-induced protein 1, chloroplastic-like [Cucurbita moschata]	[more]
XP_022974396.1	1.4e-70	98.37	early light-induced protein 1, chloroplastic-like [Cucurbita maxima]	[more]
XP_023539090.1	1.1e-67	96.74	early light-induced protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_008438620.1	7.0e-54	64.58	PREDICTED: early light-induced protein 1, chloroplastic [Cucumis melo]	[more]
XP_022955473.1	4.5e-53	73.30	early light-induced protein 1, chloroplastic-like [Cucurbita moschata] >XP_02295...	[more]

BLAST of Carg06172-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT3G22840.1	6.3e-49	82.14	Chlorophyll A-B binding family protein	[more]
AT4G14690.1	1.2e-44	74.11	Chlorophyll A-B binding family protein	[more]

BLAST of Carg06172-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P93735\|ELIP1_ARATH	1.1e-47	82.14	Early light-induced protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
sp\|Q94K66\|ELIP2_ARATH	2.2e-43	74.11	Early light-induced protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
sp\|P11432\|ELI_PEA	4.9e-43	77.68	Early light-induced protein, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1	[more]
sp\|Q01931\|DS22_CRAPL	2.5e-34	64.81	Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum O...	[more]
sp\|P14895\|ELI5_HORVU	2.1e-33	64.55	High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum...	[more]

BLAST of Carg06172-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AXH6\|A0A1S3AXH6_CUCME	4.6e-54	64.58	early light-induced protein 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
tr\|A0A0A0LA49\|A0A0A0LA49_CUCSA	5.7e-52	72.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G145780 PE=4 SV=1	[more]
tr\|A0A2P5FWA6\|A0A2P5FWA6_9ROSA	1.9e-47	88.39	Chlorophyll A-B binding protein OS=Trema orientalis OX=63057 GN=TorRG33x02_01867...	[more]
tr\|A0A151U6R7\|A0A151U6R7_CAJCA	1.9e-47	88.39	Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_007678 PE=4 S...	[more]
tr\|I1NGK2\|I1NGK2_SOYBN	3.2e-47	88.39	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_20G150600 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg06172	Carg06172	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg06172-RA	Carg06172-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg06172-RA.three_prime_UTR.1	Carg06172-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg06172-RA.CDS.3	Carg06172-RA.CDS.3	CDS
Carg06172-RA.CDS.2	Carg06172-RA.CDS.2	CDS
Carg06172-RA.CDS.1	Carg06172-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg06172-RA.five_prime_UTR.1	Carg06172-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg06172-RA.exon.3	Carg06172-RA.exon.3	exon
Carg06172-RA.exon.2	Carg06172-RA.exon.2	exon
Carg06172-RA.exon.1	Carg06172-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 84..127 e-value: 3.1E-5 score: 24.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..70
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 16..183
None	No IPR available	PANTHER	PTHR14154:SF5	EARLY LIGHT-INDUCED PROTEIN 1, CHLOROPLASTIC-RELATED	coord: 16..183
None	No IPR available	SUPERFAMILY	SSF103511	Chlorophyll a-b binding protein	coord: 61..180