Carg05947 (gene) Silver-seed gourd

Overview
NameCarg05947
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionAlkylated DNA repair protein
LocationCucurbita_argyrosperma_scaffold_026 : 399360 .. 399986 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAACTCCAAACTACGACCAAATCTCTCAAAAATCACTCAAAATCAAGCATGAAGATAATAGATTCTTGTCGAGGGTTGTGTCAAAAGACCCTAATTCCGCCGCTAACTCCTCTTTTAGAGTGTATTACGGCGGCGCTGCCGGTGCAATTCCGTTCAGATGGGAGTCCCGTCCCGGCACTCCAAAGCATACTTTCTCAGAAACTTCCATCCCTCCTCTTACGCCGCCGCCGTCTTATTATTCTTCCTCTTCACATTCTACCTTCAAGGCCTCTTCCAAACCAACCCTTTTGAGCTCTATTTTCCCCCGGCGAACTTTGTCGTCCTTCTCCGCCTCTTCCTCATCCTCCTGTTCCTCACCGTCGCCGTTCGTTAGACCGAAATTCTTTAAGCGTCGTCGTCGTCACTCGTTGGATTCTCATAGCTTGCCGTTGGAGTATAACGACAACGACAACGACGGGGAGGAGGCGGTGGGGAGCTCCAATTCTCCGACGTCGACATTGGGGTATGGTGGTTGTTCGGGTAGGGGATCATTTTTGGGAGGTTGCTACCAGTTAGTGAGCGTGAAGAATGCTTTGTTGACCATTGTTGGGCATGGATCTACAACACGAGGTACTGTTAATTAG

mRNA sequence

ATGCAAACTCCAAACTACGACCAAATCTCTCAAAAATCACTCAAAATCAAGCATGAAGATAATAGATTCTTGTCGAGGGTTGTGTCAAAAGACCCTAATTCCGCCGCTAACTCCTCTTTTAGAGTGTATTACGGCGGCGCTGCCGGTGCAATTCCGTTCAGATGGGAGTCCCGTCCCGGCACTCCAAAGCATACTTTCTCAGAAACTTCCATCCCTCCTCTTACGCCGCCGCCGTCTTATTATTCTTCCTCTTCACATTCTACCTTCAAGGCCTCTTCCAAACCAACCCTTTTGAGCTCTATTTTCCCCCGGCGAACTTTGTCGTCCTTCTCCGCCTCTTCCTCATCCTCCTGTTCCTCACCGTCGCCGTTCGTTAGACCGAAATTCTTTAAGCGTCGTCGTCGTCACTCGTTGGATTCTCATAGCTTGCCGTTGGAGTATAACGACAACGACAACGACGGGGAGGAGGCGGTGGGGAGCTCCAATTCTCCGACGTCGACATTGGGGTATGGTGGTTGTTCGGGTAGGGGATCATTTTTGGGAGGTTGCTACCAGTTAGTGAGCGTGAAGAATGCTTTGTTGACCATTGTTGGGCATGGATCTACAACACGAGGTACTGTTAATTAG

Coding sequence (CDS)

ATGCAAACTCCAAACTACGACCAAATCTCTCAAAAATCACTCAAAATCAAGCATGAAGATAATAGATTCTTGTCGAGGGTTGTGTCAAAAGACCCTAATTCCGCCGCTAACTCCTCTTTTAGAGTGTATTACGGCGGCGCTGCCGGTGCAATTCCGTTCAGATGGGAGTCCCGTCCCGGCACTCCAAAGCATACTTTCTCAGAAACTTCCATCCCTCCTCTTACGCCGCCGCCGTCTTATTATTCTTCCTCTTCACATTCTACCTTCAAGGCCTCTTCCAAACCAACCCTTTTGAGCTCTATTTTCCCCCGGCGAACTTTGTCGTCCTTCTCCGCCTCTTCCTCATCCTCCTGTTCCTCACCGTCGCCGTTCGTTAGACCGAAATTCTTTAAGCGTCGTCGTCGTCACTCGTTGGATTCTCATAGCTTGCCGTTGGAGTATAACGACAACGACAACGACGGGGAGGAGGCGGTGGGGAGCTCCAATTCTCCGACGTCGACATTGGGGTATGGTGGTTGTTCGGGTAGGGGATCATTTTTGGGAGGTTGCTACCAGTTAGTGAGCGTGAAGAATGCTTTGTTGACCATTGTTGGGCATGGATCTACAACACGAGGTACTGTTAATTAG

Protein sequence

MQTPNYDQISQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPGTPKHTFSETSIPPLTPPPSYYSSSSHSTFKASSKPTLLSSIFPRRTLSSFSASSSSSCSSPSPFVRPKFFKRRRRHSLDSHSLPLEYNDNDNDGEEAVGSSNSPTSTLGYGGCSGRGSFLGGCYQLVSVKNALLTIVGHGSTTRGTVN
Homology
[Close]
BLAST of Carg05947 vs. NCBI nr
Match: XP_023545973.1 (uncharacterized protein LOC111804354 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 221.1 bits (562), Expect = 3.5e-54
Identity = 190/205 (92.68%), Postives = 192/205 (93.66%), Query Frame = 0 

Query: 1   MQTPNYDQISQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60
           MQT NYDQISQKSL+IKHEDNRFLSR VS + NSAANSSFRVYYGGAAGAIPFRWESRPG
Sbjct: 1   MQTRNYDQISQKSLEIKHEDNRFLSRAVSNEANSAANSSFRVYYGGAAGAIPFRWESRPG 60

Query: 61  TPKHTFSETSIPPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           TPKHTFSETSIP  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  TPKHTFSETSIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXRPKFFKXXXXXSLDSHSLPXXXXXXXXXXXEAVGSSNSPTSTLGYGGCSGRGSFL 180
           XXXXXRPKFF XXXXX LDS    XXXXXXXXXXX AVGSSNSPTSTLGYGGCSGRGSFL
Sbjct: 121 XXXXXRPKFFXXXXXXXLDSQXXXXXXXXXXXXXXXAVGSSNSPTSTLGYGGCSGRGSFL 180

Query: 181 GGCYQLVSVKNALLTIVGHGSTTRG 206
           GGCYQLVSVKNALLTIVGHGSTTRG
Sbjct: 181 GGCYQLVSVKNALLTIVGHGSTTRG 205

[Close]
BLAST of Carg05947 vs. NCBI nr
Match: XP_023545206.1 (uncharacterized protein LOC111804354 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 218.8 bits (556), Expect = 1.8e-53
Identity = 189/204 (92.65%), Postives = 191/204 (93.63%), Query Frame = 0 

Query: 1   MQTPNYDQISQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60
           MQT NYDQISQKSL+IKHEDNRFLSR VS + NSAANSSFRVYYGGAAGAIPFRWESRPG
Sbjct: 1   MQTRNYDQISQKSLEIKHEDNRFLSRAVSNEANSAANSSFRVYYGGAAGAIPFRWESRPG 60

Query: 61  TPKHTFSETSIPPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           TPKHTFSETSIP  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  TPKHTFSETSIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXRPKFFKXXXXXSLDSHSLPXXXXXXXXXXXEAVGSSNSPTSTLGYGGCSGRGSFL 180
           XXXXXRPKFF XXXXX LDS    XXXXXXXXXXX AVGSSNSPTSTLGYGGCSGRGSFL
Sbjct: 121 XXXXXRPKFFXXXXXXXLDSQXXXXXXXXXXXXXXXAVGSSNSPTSTLGYGGCSGRGSFL 180

Query: 181 GGCYQLVSVKNALLTIVGHGSTTR 205
           GGCYQLVSVKNALLTIVGHGSTTR
Sbjct: 181 GGCYQLVSVKNALLTIVGHGSTTR 204

[Close]
BLAST of Carg05947 vs. NCBI nr
Match: XP_022962524.1 (uncharacterized protein LOC111462925 [Cucurbita moschata])

HSP 1 Score: 204.9 bits (520), Expect = 2.6e-49
Identity = 148/205 (72.20%), Postives = 149/205 (72.68%), Query Frame = 0 

Query: 1   MQTPNYDQISQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60
           MQT NYDQ+SQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG
Sbjct: 1   MQTRNYDQVSQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60

Query: 61  TPKHTFSETSIPPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           TPKHTFSETSIPPL                                   XXXXXXXXXXX
Sbjct: 61  TPKHTFSETSIPPLTPPPSYYSSTSHSTFKASSKPTLLSSIFPRRTLSSXXXXXXXXXXX 120

Query: 121 XXXXXRPKFFKXXXXXSLDSHSLPXXXXXXXXXXXEAVGSSNSPTSTLGYGGCSGRGSFL 180
           XXXXX      XXXXX        XXXXXXXXXXX      NSPTSTLGYGGCSGRGSFL
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSPTSTLGYGGCSGRGSFL 180

Query: 181 GGCYQLVSVKNALLTIVGHGSTTRG 206
           GGCYQLVSVKNALLTIVGHGSTTRG
Sbjct: 181 GGCYQLVSVKNALLTIVGHGSTTRG 205

[Close]
BLAST of Carg05947 vs. NCBI nr
Match: XP_022991072.1 (uncharacterized protein LOC111487777 [Cucurbita maxima])

HSP 1 Score: 189.1 bits (479), Expect = 1.5e-44
Identity = 170/209 (81.34%), Postives = 172/209 (82.30%), Query Frame = 0 

Query: 1   MQTPNYDQISQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60
           MQT N DQISQKSLKIKHEDNR LSR +SK+ NSAANSSFRVYYGGAAGAIPFRWESRPG
Sbjct: 1   MQTRNDDQISQKSLKIKHEDNRLLSRALSKEANSAANSSFRVYYGGAAGAIPFRWESRPG 60

Query: 61  TPKHTFSETSIPPL----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           TPKHTFSETSIPPL    XXXXXXXXXXXXXXXXXXXX          XXXXXXXXXXXX
Sbjct: 61  TPKHTFSETSIPPLTXXXXXXXXXXXXXXXXXXXXXXXSSIFPRRTLSXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXRPKFFKXXXXXSLDSHSLPXXXXXXXXXXXEAVGSSNSPTSTLGYGGCSGR 180
           XXXXXXXXX      XXXXX        XXXXXXXXXXX   GSSNSPTSTLGYG CSGR
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSSNSPTSTLGYGVCSGR 180

Query: 181 GSFLGGCYQLVSVKNALLTIVGHGSTTRG 206
           GSFLGGCYQLVSVKNALLTIVGHGSTTRG
Sbjct: 181 GSFLGGCYQLVSVKNALLTIVGHGSTTRG 209

[Close]
BLAST of Carg05947 vs. NCBI nr
Match: XP_022134140.1 (putative protein TPRXL [Momordica charantia])

HSP 1 Score: 160.2 bits (404), Expect = 7.4e-36
Identity = 154/225 (68.44%), Postives = 171/225 (76.00%), Query Frame = 0 

Query: 1   MQTPNYDQISQKSLKIKHEDNRFLSR---VVSKDPNSAANSSFRVYYGGAAGAIPFRWES 60
           MQ+ NYDQISQK L+IKH+++RF +R   V+SK+ NSAANSSFRVYYGGA+GAIPFRWES
Sbjct: 1   MQSANYDQISQKPLQIKHQNDRFFTRPAPVLSKEANSAANSSFRVYYGGASGAIPFRWES 60

Query: 61  RPGTPKHTFSETSIPPL--------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RPGTPKH++SETSIPPL              XXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  RPGTPKHSYSETSIPPLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXRPKFFKXXXXXSLDSHSLPXXXXXXXXXXXEAVGSSNS 180
           XXXXXXXXXXXXXXXXXXXXXX+  FFK     S D+ SLP           E  GSSNS
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXKLNFFKRRRSIS-DTPSLPFEYSFDDGDGDEP-GSSNS 180

Query: 181 PTSTLGYGGCSGRGSFLGGCYQLVSVKNALLTIVGHGSTTRGTVN 209
           PTSTL +GG S   +   GCYQLVSVKNA L++VGHGS  RGTVN
Sbjct: 181 PTSTLCFGGASSSRASFRGCYQLVSVKNAFLSMVGHGSAGRGTVN 223

[Close]
BLAST of Carg05947 vs. TAIR10
Match: AT5G01790.1 (unknown protein)

HSP 1 Score: 58.9 bits (141), Expect = 4.2e-09
Identity = 36/78 (46.15%), Postives = 43/78 (55.13%), Query Frame = 0 

Query: 4  PNYDQISQKSLKIKHEDNRFLSRVVSKDPN-----SAANSSFRV-YYGGAAGAIPFRWES 63
          PN       SL +K +D    S  +          SAA  SFR+ YY GAAGA+PF WES
Sbjct: 22 PNAGSERAASLSLKKQDTATFSGKLPSTKQRFSSVSAACPSFRIYYYDGAAGAVPFEWES 81

Query: 64 RPGTPKHTFSE-TSIPPL 75
           PGTPKH  SE  ++PPL
Sbjct: 82 HPGTPKHPSSELPTLPPL 99

[Close]
BLAST of Carg05947 vs. TAIR10
Match: AT1G06930.1 (unknown protein)

HSP 1 Score: 43.1 bits (100), Expect = 2.4e-04
Identity = 15/28 (53.57%), Postives = 22/28 (78.57%), Query Frame = 0 

Query: 43 YYGGAAGAIPFRWESRPGTPKHTFSETS 71
          YYGG++ A+PF+WES+PGTP+     +S
Sbjct: 24 YYGGSSAAVPFKWESQPGTPRRLSKRSS 51

[Close]
BLAST of Carg05947 vs. TAIR10
Match: AT3G56260.2 (unknown protein)

HSP 1 Score: 43.1 bits (100), Expect = 2.4e-04
Identity = 21/31 (67.74%), Postives = 25/31 (80.65%), Query Frame = 0 

Query: 43 YYGGAAGAIPFRWESRPGTPK-HTFSETSIP 73
          YYGGA  +IPF WESRPGTPK H  S++S+P
Sbjct: 18 YYGGA--SIPFIWESRPGTPKNHLCSDSSLP 46

[Close]
BLAST of Carg05947 vs. TrEMBL
Match: tr|A0A1S4E178|A0A1S4E178_CUCME (Uncharacterized protein OS=Cucumis melo OX=3656 GN=LOC103496610 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.9e-35
Identity = 153/233 (65.67%), Postives = 164/233 (70.39%), Query Frame = 0 

Query: 1   MQTPNYDQISQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60
           MQT NYDQISQKS +I   ++RF +R +SK+ NS  NSSFRVYYGGA GAIPFRWESRPG
Sbjct: 1   MQTQNYDQISQKSSQITKHEDRFFTRALSKELNSTTNSSFRVYYGGATGAIPFRWESRPG 60

Query: 61  TPKHTFSETSIPPL---------------------XXXXXXXXXXXXXXXXXXXXXXXXX 120
           TPKHTFS+TSIPPL                     XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  TPKHTFSDTSIPPLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXRPKFFKXXXXXSLDSHSLPXXXXXXXXXXXEAVG 180
           XXXXXXXXXXXXXXXXXXXXXXXX  RPKFFK     S D  SLP           E V 
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXFVRPKFFKRRRHFS-DIPSLPFEYSFDDKDGDEVVA 180

Query: 181 SS---NSPTSTLGY-GGCSGRGSFLGGCYQLVSVKNALLTIVGHGSTTRGTVN 209
            S   NSPTS L + GG S R S  GGCYQLVSVK ALL+IVGHGS +RGT+N
Sbjct: 181 GSTAPNSPTSILCFGGGSSSRASLFGGCYQLVSVKKALLSIVGHGSASRGTLN 232

[Close]
BLAST of Carg05947 vs. TrEMBL
Match: tr|A0A0A0K7T8|A0A0A0K7T8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014460 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 7.1e-35
Identity = 151/232 (65.09%), Postives = 164/232 (70.69%), Query Frame = 0 

Query: 1   MQTPNYDQISQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60
           M+T +YDQISQKS  I   +++F +R +SK+ NS  NSSFRVYYGGA GAIPFRWESRPG
Sbjct: 1   MKTQSYDQISQKSFPITKHEDKFFTRALSKELNSTTNSSFRVYYGGATGAIPFRWESRPG 60

Query: 61  TPKHTFSETSIPPL---------------------XXXXXXXXXXXXXXXXXXXXXXXXX 120
           TPKHTFS+TSIPPL                     XXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  TPKHTFSDTSIPPLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXRPKFFKXXXXXSLDSHSLPXXXXXXXXXXXEAVG 180
           XXXXXXXXXXXXXXXXXXXXXXXX  RPKFFK     S D  SLP           E V 
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXFVRPKFFKRRRRFS-DIPSLPFEYSFDDKDGDEVVA 180

Query: 181 SS--NSPTSTLGY-GGCSGRGSFLGGCYQLVSVKNALLTIVGHGSTTRGTVN 209
            S  NSPTS L + GG S R S  GGCYQLVSVKNALL+IVGHGS +RGT+N
Sbjct: 181 GSAPNSPTSILCFGGGSSSRASLFGGCYQLVSVKNALLSIVGHGSASRGTLN 231

[Close]
BLAST of Carg05947 vs. TrEMBL
Match: tr|A0A1U8APC0|A0A1U8APC0_NELNU (Uncharacterized protein OS=Nelumbo nucifera OX=4432 GN=LOC104602466 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.5e-16
Identity = 45/66 (68.18%), Postives = 57/66 (86.36%), Query Frame = 0 

Query: 9  ISQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPGTPKHTFSE 68
          + QKSL+IK +DN+F +R++SK+ NS  NSSFRVYYGGA G +PF WES+PGTPKHTFS+
Sbjct: 8  LPQKSLQIK-QDNKFFTRLLSKE-NSMTNSSFRVYYGGAKGEVPFMWESQPGTPKHTFSD 67

Query: 69 TSIPPL 75
          TS+PPL
Sbjct: 68 TSLPPL 71

[Close]
BLAST of Carg05947 vs. TrEMBL
Match: tr|A0A1U8A562|A0A1U8A562_NELNU (uncharacterized serine-rich protein C215.13 OS=Nelumbo nucifera OX=4432 GN=LOC104597201 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 7.4e-16
Identity = 42/71 (59.15%), Postives = 60/71 (84.51%), Query Frame = 0 

Query: 4  PNYDQISQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPGTPK 63
          P+   + +KSL+IK +D++F +R++SK+ + A +SSFRVYYGGA GA+PF WES+PGTPK
Sbjct: 3  PSSPDLPRKSLQIK-QDDKFFTRLLSKESSMANSSSFRVYYGGATGAVPFMWESQPGTPK 62

Query: 64 HTFSETSIPPL 75
          +TFS+TS+PPL
Sbjct: 63 YTFSDTSLPPL 72

[Close]
BLAST of Carg05947 vs. TrEMBL
Match: tr|A0A2N9J5I6|A0A2N9J5I6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60334 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.1e-15
Identity = 46/74 (62.16%), Postives = 57/74 (77.03%), Query Frame = 0 

Query: 1  MQTPNYDQISQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60
          M + ++D   Q  L IK ++ +F SR++SK+  S AN SFRVYYGGA+GAIPF WES+PG
Sbjct: 1  MLSESHDLAQQSQLHIK-DNGKFFSRLLSKE-TSVANPSFRVYYGGASGAIPFMWESQPG 60

Query: 61 TPKHTFSETSIPPL 75
          TPKHTFSE SIPPL
Sbjct: 61 TPKHTFSEASIPPL 72

The following BLAST results are available for this feature:
BLAST of Carg05947 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023545973.13.5e-5492.68uncharacterized protein LOC111804354 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023545206.11.8e-5392.65uncharacterized protein LOC111804354 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022962524.12.6e-4972.20uncharacterized protein LOC111462925 [Cucurbita moschata][more]
XP_022991072.11.5e-4481.34uncharacterized protein LOC111487777 [Cucurbita maxima][more]
XP_022134140.17.4e-3668.44putative protein TPRXL [Momordica charantia][more]
BLAST of Carg05947 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G01790.14.2e-0946.15unknown protein[more]
AT1G06930.12.4e-0453.57unknown protein[more]
AT3G56260.22.4e-0467.74unknown protein[more]
BLAST of Carg05947 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg05947 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E178|A0A1S4E178_CUCME1.9e-3565.67Uncharacterized protein OS=Cucumis melo OX=3656 GN=LOC103496610 PE=4 SV=1[more]
tr|A0A0A0K7T8|A0A0A0K7T8_CUCSA7.1e-3565.09Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014460 PE=4 SV=1[more]
tr|A0A1U8APC0|A0A1U8APC0_NELNU1.5e-1668.18Uncharacterized protein OS=Nelumbo nucifera OX=4432 GN=LOC104602466 PE=4 SV=1[more]
tr|A0A1U8A562|A0A1U8A562_NELNU7.4e-1659.15uncharacterized serine-rich protein C215.13 OS=Nelumbo nucifera OX=4432 GN=LOC10... [more]
tr|A0A2N9J5I6|A0A2N9J5I6_FAGSY2.1e-1562.16Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS60334 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05947-RACarg05947-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 141..166
NoneNo IPR availablePANTHERPTHR33257:SF17EXPRESSED PROTEINcoord: 7..172
NoneNo IPR availablePANTHERPTHR33257FAMILY NOT NAMEDcoord: 7..172

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg05947Cla012020Watermelon (97103) v1carwmB0019
Carg05947Cla016414Watermelon (97103) v1carwmB0025
Carg05947Csa6G014460Cucumber (Chinese Long) v2carcuB0023
Carg05947MELO3C026052Melon (DHL92) v3.5.1carmeB0025
Carg05947MELO3C019998Melon (DHL92) v3.5.1carmeB0021
Carg05947ClCG11G005770Watermelon (Charleston Gray)carwcgB0019
Carg05947ClCG04G006490Watermelon (Charleston Gray)carwcgB0026
Carg05947CSPI04G16420Wild cucumber (PI 183967)carcpiB0020
Carg05947CSPI06G02050Wild cucumber (PI 183967)carcpiB0024
Carg05947Cucsa.326080Cucumber (Gy14) v1carcgyB0026
Carg05947CmoCh15G001710Cucurbita moschata (Rifu)carcmoB0031
Carg05947CmoCh07G012760Cucurbita moschata (Rifu)carcmoB0035
Carg05947CmoCh04G030010Cucurbita moschata (Rifu)carcmoB0033
Carg05947CmoCh03G003180Cucurbita moschata (Rifu)carcmoB0032
Carg05947Lsi01G016020Bottle gourd (USVL1VR-Ls)carlsiB015
Carg05947Lsi03G002730Bottle gourd (USVL1VR-Ls)carlsiB017
Carg05947Cp4.1LG13g07630Cucurbita pepo (Zucchini)carcpeB0031
Carg05947Cp4.1LG01g21860Cucurbita pepo (Zucchini)carcpeB0034
Carg05947CsGy6G002130Cucumber (Gy14) v2carcgybB0023
Carg05947MELO3C026052.2Melon (DHL92) v3.6.1carmedB0026
Carg05947MELO3C019998.2Melon (DHL92) v3.6.1carmedB0022
Carg05947CsaV3_6G002200Cucumber (Chinese Long) v3carcucB0024
Carg05947Cla97C11G212690Watermelon (97103) v2carwmbB0015
Carg05947Cla97C04G073100Watermelon (97103) v2carwmbB0021
Carg05947Bhi04G001846Wax gourdcarwgoB0022
Carg05947Bhi03G001746Wax gourdcarwgoB0025
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg05947Carg02150Silver-seed gourdcarcarB020
Carg05947Carg12663Silver-seed gourdcarcarB021
Carg05947Carg19503Silver-seed gourdcarcarB024
The following block(s) are covering this gene:
GeneOrganismBlock
Carg05947Silver-seed gourdcarcarB025
Carg05947Cucumber (Gy14) v2carcgybB0019
Carg05947Cucumber (Gy14) v1carcgyB0018
Carg05947Cucurbita maxima (Rimu)carcmaB0030
Carg05947Cucurbita maxima (Rimu)carcmaB0032
Carg05947Cucurbita maxima (Rimu)carcmaB0033
Carg05947Cucurbita pepo (Zucchini)carcpeB0030
Carg05947Cucumber (Chinese Long) v2carcuB0020
Carg05947Cucumber (Chinese Long) v3carcucB0020