Carg19503 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19503
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Alkylated DNA repair protein
Location	Cucurbita_argyrosperma_scaffold_104 : 64111 .. 64620 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTGTGAAACCTCCGATTATCCTCCAAAATCGCTTCAATTCAAGCACAACGACAAATTCTTCTCCAAGCTTCTCACCAGAGAAAGTTCTAGAGCCAATCACTCTTCTAGAATCTACTATGGCGGATTGGCCGGTGCTGTTCCTTTCGTTTGGGAGTCTCAGCCAGGTACGCCTCTTCACCGATTTTCCGATGATCTAACTCCTCCTCTCACTCCTCCTCCTTCTTACTTTTCTCATTCTCTTCAAAAACCGCCAAAAAACCGCTCCAAATCGCTCTCTCTTTTCCATATCTTCTTCAATCATAAGAGGAAACTCGATCTGTTGACGCCGCCGGTTTCCAAATCGGCGTCATTGCCGTCTTCCGGATCGATGTTCGATTCGGCCGTCGGTGCGAAGTTCGCCGGACGCCGTTCGGCGCGGCGGTTTGTGCCTGGAGTCTCGCGTTCGAAGGAGGGAGAGGATGCGGCGGCCTCCGGCTCAGTGCTTTGTTTCGGAATCGGTAGGTGA

mRNA sequence

ATGCTCTGTGAAACCTCCGATTATCCTCCAAAATCGCTTCAATTCAAGCACAACGACAAATTCTTCTCCAAGCTTCTCACCAGAGAAAGTTCTAGAGCCAATCACTCTTCTAGAATCTACTATGGCGGATTGGCCGGTGCTGTTCCTTTCGTTTGGGAGTCTCAGCCAGGTACGCCTCTTCACCGATTTTCCGATGATCTAACTCCTCCTCTCACTCCTCCTCCTTCTTACTTTTCTCATTCTCTTCAAAAACCGCCAAAAAACCGCTCCAAATCGCTCTCTCTTTTCCATATCTTCTTCAATCATAAGAGGAAACTCGATCTGTTGACGCCGCCGGTTTCCAAATCGGCGTCATTGCCGTCTTCCGGATCGATGTTCGATTCGGCCGTCGGTGCGAAGTTCGCCGGACGCCGTTCGGCGCGGCGGTTTGTGCCTGGAGTCTCGCGTTCGAAGGAGGGAGAGGATGCGGCGGCCTCCGGCTCAGTGCTTTGTTTCGGAATCGGTAGGTGA

Coding sequence (CDS)

ATGCTCTGTGAAACCTCCGATTATCCTCCAAAATCGCTTCAATTCAAGCACAACGACAAATTCTTCTCCAAGCTTCTCACCAGAGAAAGTTCTAGAGCCAATCACTCTTCTAGAATCTACTATGGCGGATTGGCCGGTGCTGTTCCTTTCGTTTGGGAGTCTCAGCCAGGTACGCCTCTTCACCGATTTTCCGATGATCTAACTCCTCCTCTCACTCCTCCTCCTTCTTACTTTTCTCATTCTCTTCAAAAACCGCCAAAAAACCGCTCCAAATCGCTCTCTCTTTTCCATATCTTCTTCAATCATAAGAGGAAACTCGATCTGTTGACGCCGCCGGTTTCCAAATCGGCGTCATTGCCGTCTTCCGGATCGATGTTCGATTCGGCCGTCGGTGCGAAGTTCGCCGGACGCCGTTCGGCGCGGCGGTTTGTGCCTGGAGTCTCGCGTTCGAAGGAGGGAGAGGATGCGGCGGCCTCCGGCTCAGTGCTTTGTTTCGGAATCGGTAGGTGA

Protein sequence

MLCETSDYPPKSLQFKHNDKFFSKLLTRESSRANHSSRIYYGGLAGAVPFVWESQPGTPLHRFSDDLTPPLTPPPSYFSHSLQKPPKNRSKSLSLFHIFFNHKRKLDLLTPPVSKSASLPSSGSMFDSAVGAKFAGRRSARRFVPGVSRSKEGEDAAASGSVLCFGIGR

Homology

[Close]

BLAST of Carg19503 vs. NCBI nr
Match: XP_008464261.1 (PREDICTED: uncharacterized protein LOC103502186 [Cucumis melo])

HSP 1 Score: 272.3 bits (695), Expect = 1.1e-69
Identity = 140/170 (82.35%), Postives = 150/170 (88.24%), Query Frame = 0


Query: 1   MLCETSDYPPKSLQFKHNDKFFSKLLTRESSRANHSSRIYYGGLAGAVPFVWESQPGTPL 60
           M+CETSDYP KSLQFK NDKFFSK+L+RESSRAN+SSRIYYGGLAGAVPFVWESQPGTP+
Sbjct: 1   MVCETSDYPQKSLQFKQNDKFFSKILSRESSRANYSSRIYYGGLAGAVPFVWESQPGTPI 60

Query: 61  HRFSDDLTPPLTPPPSYFSHSLQKPPKNRSKSLSLFHIFFNHKRKLDLLT-PPVSKSASL 120
           HRFSDDLTPPLTPPPSYFS SL+KP K RSKSLSL HIFFN KRK DLL+ PPVSKSASL
Sbjct: 61  HRFSDDLTPPLTPPPSYFSDSLKKPLKKRSKSLSLLHIFFNSKRKFDLLSPPPVSKSASL 120

Query: 121 PSSGSMFDSAVGAKFAGRRSARRFVPGVSRSKEGEDAAASGSVLCFGIGR 170
           PS GS+FDSA GAKF GRRSARRF       KE E+AAASGSVLCFG+GR
Sbjct: 121 PSPGSVFDSAAGAKFTGRRSARRF----PTEKEEENAAASGSVLCFGLGR 166

[Close]

BLAST of Carg19503 vs. NCBI nr
Match: XP_022978307.1 (uncharacterized protein LOC111478334 [Cucurbita maxima])

HSP 1 Score: 270.4 bits (690), Expect = 4.1e-69
Identity = 133/140 (95.00%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 1   MLCETSDYPPKSLQFKHNDKFFSKLLTRESSRANHSSRIYYGGLAGAVPFVWESQPGTPL 60
           MLCETSDYPPKSLQFKHNDKFFSKLLTRESSRANHSSRIYYGGLAGAVPFVWESQPGTPL
Sbjct: 1   MLCETSDYPPKSLQFKHNDKFFSKLLTRESSRANHSSRIYYGGLAGAVPFVWESQPGTPL 60

Query: 61  HRFSDDLTPPLTPPPSYFSHSLQKPPKNRSKSLSLFHIFFNHKRKLDLLTPPVSKSASLP 120
           HRFSDDLTPPLTPPPSYFSHSLQKPPKNRSKSLSLFHIFFNHKRKLDLLTPPVSKSASLP
Sbjct: 61  HRFSDDLTPPLTPPPSYFSHSLQKPPKNRSKSLSLFHIFFNHKRKLDLLTPPVSKSASLP 120

Query: 121 SSGSMFDSAVGAKFAGRRSA 141
           SSGS FDSAVGA    R  A
Sbjct: 121 SSGSTFDSAVGAAVCARSLA 140

[Close]

BLAST of Carg19503 vs. NCBI nr
Match: XP_011653717.1 (PREDICTED: uncharacterized protein LOC105435254 [Cucumis sativus] >KGN54437.1 hypothetical protein Csa_4G329820 [Cucumis sativus])

HSP 1 Score: 260.8 bits (665), Expect = 3.3e-66
Identity = 135/170 (79.41%), Postives = 147/170 (86.47%), Query Frame = 0


Query: 1   MLCETSDYPPKSLQFKHNDKFFSKLLTRESSRANHSSRIYYGGLAGAVPFVWESQPGTPL 60
           M+CETS+YP KSLQFK NDKF SK+L+RESSRAN+SSRIYYGGLAGAVPFVWESQPGTP+
Sbjct: 1   MVCETSEYPQKSLQFKQNDKFISKILSRESSRANYSSRIYYGGLAGAVPFVWESQPGTPI 60

Query: 61  HRFSDDLTPPLTPPPSYFSHSLQKPPKNRSKSLSLFHIFFNHKRKLDLLT-PPVSKSASL 120
           HRFSDDLTPPLTPPPSYFS SL+KP K RSKSLSL HIFF+ KRK DLL+ PPVSKS SL
Sbjct: 61  HRFSDDLTPPLTPPPSYFSDSLKKPLKKRSKSLSLLHIFFSSKRKFDLLSPPPVSKSPSL 120

Query: 121 PSSGSMFDSAVGAKFAGRRSARRFVPGVSRSKEGEDAAASGSVLCFGIGR 170
            SSGS+FDSA GAKF GRRSARRF       KE E+AAA+ SVLCFGIGR
Sbjct: 121 SSSGSVFDSAAGAKFTGRRSARRF----PTEKEEENAAATSSVLCFGIGR 166

[Close]

BLAST of Carg19503 vs. NCBI nr
Match: XP_022925049.1 (uncharacterized protein LOC111432413 [Cucurbita moschata])

HSP 1 Score: 252.7 bits (644), Expect = 8.9e-64
Identity = 135/171 (78.95%), Postives = 145/171 (84.80%), Query Frame = 0


Query: 1   MLCETSDYPPKSLQFKHNDKFFSKLLTRESSRANHSSRIYYGGLAGAVPFVWESQPGTPL 60
           MLCETSD   +SLQ KHNDKFFSKLLTRESSRA++SSR+YY GLAGAVPF WESQPGTP+
Sbjct: 1   MLCETSDNLHQSLQIKHNDKFFSKLLTRESSRADYSSRVYYAGLAGAVPFGWESQPGTPI 60

Query: 61  HRFSDDLTPPLTPPPSYFSHSLQKPPKNRSKSLSLFHIFFNHKRKL-DLLTPPVSKSASL 120
           HRFSDDLTPPLTPPPSYFS SL+KPPK RSKSLSLFHIFFN KRK+ DLL+PP SKSASL
Sbjct: 61  HRFSDDLTPPLTPPPSYFSDSLKKPPKKRSKSLSLFHIFFNPKRKIDDLLSPPFSKSASL 120

Query: 121 PSSGSMFDSAVGAKFAGRRSARRFVPGVSRSKEGEDAAA-SGSVLCFGIGR 170
           PSSGSMFDSA     AGRR  RR   G+S SKE   AAA +GSVLCFGIGR
Sbjct: 121 PSSGSMFDSA-----AGRRFPRRLPSGISHSKEKAAAAAPTGSVLCFGIGR 166

[Close]

BLAST of Carg19503 vs. NCBI nr
Match: XP_023518308.1 (uncharacterized protein LOC111781828 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.3 bits (599), Expect = 1.5e-58
Identity = 127/176 (72.16%), Postives = 138/176 (78.41%), Query Frame = 0


Query: 1   MLCETSDYPPKSLQFKHNDKFFSKLLTRESSRANHSSRIYYGGLAGAVPFVWESQPGTPL 60
           MLCETSD   +SLQ KHNDKFFSKLLTRESSRA++SSR+YY GLAGAVPF WESQPGTP+
Sbjct: 39  MLCETSDNLHQSLQIKHNDKFFSKLLTRESSRADYSSRVYYAGLAGAVPFGWESQPGTPI 98

Query: 61  HRFSDDLTPPLTPPPSYFSHSLQKPPKNRSKSLSLFHIFFNHKRKL-DLLTPPVSKSASL 120
           HRFSDDLTPPLTPPPSYFS S++KPPK RSKSLSLFHIFFN KRK+ DLL+PP S SASL
Sbjct: 99  HRFSDDLTPPLTPPPSYFSDSVKKPPKKRSKSLSLFHIFFNPKRKIDDLLSPPFSNSASL 158

Query: 121 PSSGSMFDSAVGAKFAGRRSARRFVPGVSRS------KEGEDAAASGSVLCFGIGR 170
           PSSGSMFDS+     AGRR ARR   G+S S                SVLCFGIGR
Sbjct: 159 PSSGSMFDSS-----AGRRLARRLPSGISHSXXXXXXXXXXXXXXXXSVLCFGIGR 209

[Close]

BLAST of Carg19503 vs. TAIR10
Match: AT5G01790.1 (unknown protein)

HSP 1 Score: 61.6 bits (148), Expect = 5.3e-10
Identity = 59/153 (38.56%), Postives = 75/153 (49.02%), Query Frame = 0


Query: 31  SRANHSSRI-YYGGLAGAVPFVWESQPGTPLHRFSDDLT-PPLTPPPSYFSHS---LQKP 90
           S A  S RI YY G AGAVPF WES PGTP H  S+  T PPLTPPPS+FS S   +++ 
Sbjct: 57  SAACPSFRIYYYDGAAGAVPFEWESHPGTPKHPSSELPTLPPLTPPPSHFSFSGDQIRRR 116

Query: 91  PKNRSKSL------SLFHIFFNHK---RKLDLLTPPVSKSASLPSSGSMFDSAVGAKFAG 150
            K  +K +       LF +  +H    +KL   +PP S S  +    + +D     KF  
Sbjct: 117 SKKSTKKILALIPTRLFWLSGDHNGKAKKLSASSPP-SLSERVLIDENEYDL---FKFQT 176

Query: 151 RRSARRFVPGVSRSKEGEDAAASGSVLCFGIGR 170
            R+  R       S +      S S  CFGI R
Sbjct: 177 ERNVMRRFSSFDSSAD-YPIQRSQSTSCFGIRR 204

[Close]

BLAST of Carg19503 vs. TAIR10
Match: AT3G56260.2 (unknown protein)

HSP 1 Score: 58.9 bits (141), Expect = 3.4e-09
Identity = 33/71 (46.48%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 40  YYGGLAGAVPFVWESQPGTPL-HRFSDDLTP-PLTPPPSYFSHSLQKPPKNRSKSLSLFH 99
           YYGG   ++PF+WES+PGTP  H  SD   P PLTPPPSY+S  +   P+ +SK  S   
Sbjct: 18  YYGG--ASIPFIWESRPGTPKNHLCSDSSLPLPLTPPPSYYSSGILSTPRTQSKVRSKLS 77

Query: 100 IFFNHKRKLDL 109
            F +     DL
Sbjct: 78  KFLSFSMFSDL 86

[Close]

BLAST of Carg19503 vs. TAIR10
Match: AT1G06930.1 (unknown protein)

HSP 1 Score: 50.8 bits (120), Expect = 9.4e-07
Identity = 26/53 (49.06%), Postives = 30/53 (56.60%), Query Frame = 0


Query: 40 YYGGLAGAVPFVWESQPGTPLH--------------RFSDDLTPPLTPPPSYF 79
          YYGG + AVPF WESQPGTP                 F+  ++ PLTPPPSYF
Sbjct: 24 YYGGSSAAVPFKWESQPGTPRRLSKRSSSSGFNSDSDFNFPVSAPLTPPPSYF 76

[Close]

BLAST of Carg19503 vs. TAIR10
Match: AT4G25845.1 (BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 4B (TAIR:AT4G25850.2))

HSP 1 Score: 49.7 bits (117), Expect = 2.1e-06
Identity = 29/66 (43.94%), Postives = 38/66 (57.58%), Query Frame = 0


Query: 30 SSRANHSSRIYYG-GLAGAVPFVWESQPGTPLHRFSDDLTPPLTPPPSYFSHSLQKP--- 89
          SS + +SS  YY   +   VPF WE QPGTP++    ++ PPL+PPP+  S  L KP   
Sbjct: 10 SSISRNSSVGYYDERMPEGVPFEWEMQPGTPINTQPREVVPPLSPPPAMLSLGLPKPSIS 69

[Close]

BLAST of Carg19503 vs. TrEMBL
Match: tr|A0A1S3CL26|A0A1S3CL26_CUCME (uncharacterized protein LOC103502186 OS=Cucumis melo OX=3656 GN=LOC103502186 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 7.2e-70
Identity = 140/170 (82.35%), Postives = 150/170 (88.24%), Query Frame = 0


Query: 1   MLCETSDYPPKSLQFKHNDKFFSKLLTRESSRANHSSRIYYGGLAGAVPFVWESQPGTPL 60
           M+CETSDYP KSLQFK NDKFFSK+L+RESSRAN+SSRIYYGGLAGAVPFVWESQPGTP+
Sbjct: 1   MVCETSDYPQKSLQFKQNDKFFSKILSRESSRANYSSRIYYGGLAGAVPFVWESQPGTPI 60

Query: 61  HRFSDDLTPPLTPPPSYFSHSLQKPPKNRSKSLSLFHIFFNHKRKLDLLT-PPVSKSASL 120
           HRFSDDLTPPLTPPPSYFS SL+KP K RSKSLSL HIFFN KRK DLL+ PPVSKSASL
Sbjct: 61  HRFSDDLTPPLTPPPSYFSDSLKKPLKKRSKSLSLLHIFFNSKRKFDLLSPPPVSKSASL 120

Query: 121 PSSGSMFDSAVGAKFAGRRSARRFVPGVSRSKEGEDAAASGSVLCFGIGR 170
           PS GS+FDSA GAKF GRRSARRF       KE E+AAASGSVLCFG+GR
Sbjct: 121 PSPGSVFDSAAGAKFTGRRSARRF----PTEKEEENAAASGSVLCFGLGR 166

[Close]

BLAST of Carg19503 vs. TrEMBL
Match: tr|A0A0A0L1H9|A0A0A0L1H9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G329820 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 2.2e-66
Identity = 135/170 (79.41%), Postives = 147/170 (86.47%), Query Frame = 0


Query: 1   MLCETSDYPPKSLQFKHNDKFFSKLLTRESSRANHSSRIYYGGLAGAVPFVWESQPGTPL 60
           M+CETS+YP KSLQFK NDKF SK+L+RESSRAN+SSRIYYGGLAGAVPFVWESQPGTP+
Sbjct: 1   MVCETSEYPQKSLQFKQNDKFISKILSRESSRANYSSRIYYGGLAGAVPFVWESQPGTPI 60

Query: 61  HRFSDDLTPPLTPPPSYFSHSLQKPPKNRSKSLSLFHIFFNHKRKLDLLT-PPVSKSASL 120
           HRFSDDLTPPLTPPPSYFS SL+KP K RSKSLSL HIFF+ KRK DLL+ PPVSKS SL
Sbjct: 61  HRFSDDLTPPLTPPPSYFSDSLKKPLKKRSKSLSLLHIFFSSKRKFDLLSPPPVSKSPSL 120

Query: 121 PSSGSMFDSAVGAKFAGRRSARRFVPGVSRSKEGEDAAASGSVLCFGIGR 170
            SSGS+FDSA GAKF GRRSARRF       KE E+AAA+ SVLCFGIGR
Sbjct: 121 SSSGSVFDSAAGAKFTGRRSARRF----PTEKEEENAAATSSVLCFGIGR 166

[Close]

BLAST of Carg19503 vs. TrEMBL
Match: tr|M5WIL1|M5WIL1_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G289800 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.3e-26
Identity = 83/171 (48.54%), Postives = 100/171 (58.48%), Query Frame = 0


Query: 7   DYPPKSLQFKHNDKFFSKLLTRESSRANHSSRIYYGGLAGAVPFVWESQPGTPLHRFSDD 66
           + P KS   +  +KFFS+LL++ESS AN S ++YYGGLAG+VPF+WESQPGTP H FSDD
Sbjct: 8   ELPQKS---QDENKFFSRLLSKESSIANPSFKVYYGGLAGSVPFIWESQPGTPKHTFSDD 67

Query: 67  LTPPLTPPPSYFSHSLQKPPKNRSKSLSLFHIFFNHKRKLDLLTPPVSKSASL--PSSGS 126
             PPLTPPPSY+S+S QKP K  S+S +L H  F           P S S+SL   S  S
Sbjct: 68  PIPPLTPPPSYYSNSFQKPTKKHSRS-NLLHTLFPKISLNKKTHVPSSPSSSLFCSSDSS 127

Query: 127 MFDSAVGAKFAGRRSARRF------VPGVSRSKEGEDAAASGSVLCFGIGR 170
           M       KF GRRS  RF             +E EDA +  S LCF   R
Sbjct: 128 MHVPVSTRKFHGRRS--RFSSRSSSFDSTGDFEEEEDAGSPTSTLCFRFSR 172

[Close]

BLAST of Carg19503 vs. TrEMBL
Match: tr|A0A2N9HDF5|A0A2N9HDF5_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40268 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.7e-26
Identity = 77/169 (45.56%), Postives = 99/169 (58.58%), Query Frame = 0


Query: 1   MLCETSDYPPKSLQFKHNDKFFSKLLTRESSRANHSSRIYYGGLAGAVPFVWESQPGTPL 60
           M    S+ P KSLQ K +DKFFS+LL++ESS AN S  +YYG + GA+PF+WESQPGTP 
Sbjct: 1   MFSGNSELPQKSLQIKQDDKFFSRLLSKESSIANPSLGVYYGEVPGAIPFLWESQPGTPK 60

Query: 61  HRFSDDLTPPLTPPPSYFSHSLQKPPKNRSKSLSLFHIFFNHKRKLDLLTPPVSKSASLP 120
           H FSD   PPLT PPSY+S+S +KP K +S+S  L  +F     K   L+P  + S S  
Sbjct: 61  HTFSDSTLPPLTLPPSYYSNSNKKPIKKQSRSNLLHALFPKTILKKTNLSPSFTSSRSSS 120

Query: 121 SSGSMFDSAVGAKFAGRRSARRFVPGVSRSKEGEDAAAS-GSVLCFGIG 169
            S      +   K+ GR  +  F    SR  + +D   S  S LCFG G
Sbjct: 121 DSSMFAPISTPTKYHGRSRSSSF---NSRGDDQDDTIGSPTSTLCFGGG 166

[Close]

BLAST of Carg19503 vs. TrEMBL
Match: tr|F6GXY5|F6GXY5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0058g01010 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-25
Identity = 58/100 (58.00%), Postives = 71/100 (71.00%), Query Frame = 0


Query: 1   MLCETSDYPPKSLQFKHNDKFFSKLLTRESSRANHSSRIYYGGLAGAVPFVWESQPGTPL 60
           ML    D P K LQ K +DKFFS+LL++ESS AN SSR+YYGG+ GAVPF WESQPGTP 
Sbjct: 1   MLRSEQDVPQKRLQIKEDDKFFSRLLSKESSMANPSSRVYYGGVTGAVPFTWESQPGTPK 60

Query: 61  HRFSDDLTPPLTPPPSYFSHSLQKPPKNRSKSLSLFHIFF 101
           + FS+   PPLTPPPSY+S+S+ K P  +    +L H  F
Sbjct: 61  YTFSESSLPPLTPPPSYYSNSMDKKPNKKHSRSNLLHSIF 100

The following BLAST results are available for this feature:

BLAST of Carg19503 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464261.1	1.1e-69	82.35	PREDICTED: uncharacterized protein LOC103502186 [Cucumis melo]	[more]
XP_022978307.1	4.1e-69	95.00	uncharacterized protein LOC111478334 [Cucurbita maxima]	[more]
XP_011653717.1	3.3e-66	79.41	PREDICTED: uncharacterized protein LOC105435254 [Cucumis sativus] >KGN54437.1 hy...	[more]
XP_022925049.1	8.9e-64	78.95	uncharacterized protein LOC111432413 [Cucurbita moschata]	[more]
XP_023518308.1	1.5e-58	72.16	uncharacterized protein LOC111781828 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg19503 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G01790.1	5.3e-10	38.56	unknown protein	[more]
AT3G56260.2	3.4e-09	46.48	unknown protein	[more]
AT1G06930.1	9.4e-07	49.06	unknown protein	[more]
AT4G25845.1	2.1e-06	43.94	BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-rela...	[more]

BLAST of Carg19503 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg19503 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CL26\|A0A1S3CL26_CUCME	7.2e-70	82.35	uncharacterized protein LOC103502186 OS=Cucumis melo OX=3656 GN=LOC103502186 PE=...	[more]
tr\|A0A0A0L1H9\|A0A0A0L1H9_CUCSA	2.2e-66	79.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G329820 PE=4 SV=1	[more]
tr\|M5WIL1\|M5WIL1_PRUPE	1.3e-26	48.54	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G289800 PE=4 SV=1	[more]
tr\|A0A2N9HDF5\|A0A2N9HDF5_FAGSY	1.7e-26	45.56	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40268 PE=4 SV=1	[more]
tr\|F6GXY5\|F6GXY5_VITVI	1.1e-25	58.00	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_08s0058g01010 PE=4 SV=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19503-RA	Carg19503-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33257:SF17	EXPRESSED PROTEIN	coord: 4..169
None	No IPR available	PANTHER	PTHR33257	FAMILY NOT NAMED	coord: 4..169

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19503	Cla012020	Watermelon (97103) v1	carwmB0626
Carg19503	MELO3C026052	Melon (DHL92) v3.5.1	carmeB0627
Carg19503	ClCG04G006490	Watermelon (Charleston Gray)	carwcgB0609
Carg19503	ClCG11G005770	Watermelon (Charleston Gray)	carwcgB0607
Carg19503	CSPI04G16420	Wild cucumber (PI 183967)	carcpiB0660
Carg19503	Cucsa.130400	Cucumber (Gy14) v1	carcgyB0702
Carg19503	CmoCh07G012760	Cucurbita moschata (Rifu)	carcmoB0864
Carg19503	CmoCh04G030010	Cucurbita moschata (Rifu)	carcmoB0863
Carg19503	CmoCh03G003180	Cucurbita moschata (Rifu)	carcmoB0862
Carg19503	Lsi03G002730	Bottle gourd (USVL1VR-Ls)	carlsiB572
Carg19503	Lsi01G016020	Bottle gourd (USVL1VR-Ls)	carlsiB571
Carg19503	Cp4.1LG01g21860	Cucurbita pepo (Zucchini)	carcpeB0892
Carg19503	Cp4.1LG19g01450	Cucurbita pepo (Zucchini)	carcpeB0893
Carg19503	MELO3C026052.2	Melon (DHL92) v3.6.1	carmedB0635
Carg19503	CsaV3_4G027020	Cucumber (Chinese Long) v3	carcucB0661
Carg19503	Cla97C11G212690	Watermelon (97103) v2	carwmbB0652
Carg19503	Cla97C04G073100	Watermelon (97103) v2	carwmbB0654
Carg19503	Bhi03G001746	Wax gourd	carwgoB0747

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg19503	Carg05947	Silver-seed gourd	carcarB024
Carg19503	Carg12663	Silver-seed gourd	carcarB319

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19503	Cucumber (Chinese Long) v2	carcuB0650
Carg19503	Cucumber (Gy14) v2	carcgybB0626
Carg19503	Cucurbita maxima (Rimu)	carcmaB0887
Carg19503	Cucurbita maxima (Rimu)	carcmaB0888
Carg19503	Cucurbita pepo (Zucchini)	carcpeB0891