Carg05389 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05389
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Family of unknown function (DUF662)
Location	Cucurbita_argyrosperma_scaffold_010 : 1579779 .. 1581081 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAGGGAAGAGAGTTCATAGTTCATACATTACAACCAACAAAGAGACAAGAACGCTTCCTCTGAAAAAATCGAGAGAAAAAGTTGAAGATGCAGCAGGCGGAGCAAAATCCACAGCACCAGCAGCTTCAATTGATGTTACAGAATTCTGGAAATTTTAGTTTCAGTAGCAAAGACGATGAAGAGATGTCCAAATCGGCGCTTTCGGCTTTTAGGGAGAAGGAAGAGGAGATCGAGCGGATGAGGGCCGAAGTTCAGCAGAAACTTCAAGCTCGACTCGGCCGTGTCGAGGAAGAAAACAGGCGTTTGGCTTCCATTCGAGAGGTCTTCTCTTTCCTTACACATAAACCCTAACTGATTAACTCTTCGTTTTTCTTTTCTCTGTTTCATCTCTGCAATAACTGCTATCAATTTCTATTTTCTTTCCGGAATTCTATTCAATTTTGCGAAATTCAACATCTGACCTAGAAATTCTTCTGCTGCTAGTTTGCGCTTTCCGAAATCGAATCGAAACCCCTAAATTCAACCGCTAAATCGTACTTCATTCTTTATTACCTTAAATTACAAGTAAACTAGTAGTTAGGATGACTGGATAAAGAATTTAATAGCCTGAAGGGAATCATGAACAGGAACTTGAAGCAATAGCGGATCCAATGAGGAAAGAAATCGGACAGATTCGTAAGAGAATTGATGCAGTAAACAAGGAATTAAAACCACTAGGACAAACATGCCAAAAAAGGGTAATCCCCTTTTTTCTTCTTACAATCTTTCTCACAAGTTATTCCAAAGAGACAAAACATTTTTGAAACCTTTTAAGATCTGGAATTGTTGTGTATAACAGGAGAAAGAATACAAAGATGCCCTTGATGCCTTCAATGAAAAGAACAGCGAGAAAGTACAATTAGTATCAAAACTAATGGAGGTTAGTCTCATAAATTCTGAAATTCTCTCTTCTGGGAACATTGAATTTAATATGAACACATAGGTATTGTTTGTTGTGATTATGATGATATTAGATGGTTGGTGAAAGTGAAAGGCTGAGGCTGAGGAGGTTGGAAGAACTGAGTAAGCATGTGGACAACACTTCCTAATTTGATTCATCTGTTTGTAGCCCTTTGTGGTATGTGCTTTACTCTCTGTCTATGTCTGTATTATGAGGGTGTTTTACTTTAACCACTGTCTTATATTTTGATTTCATTTTGTTTTAGTTTACTTCACTTGAACCAACATTCATAACTTAGGGTAACCACTGTCTTATATGTATGTATTTCTTTTAACTAATACAAAGATATATTGTATTTAAA

mRNA sequence

GAAAGGGAAGAGAGTTCATAGTTCATACATTACAACCAACAAAGAGACAAGAACGCTTCCTCTGAAAAAATCGAGAGAAAAAGTTGAAGATGCAGCAGGCGGAGCAAAATCCACAGCACCAGCAGCTTCAATTGATGTTACAGAATTCTGGAAATTTTAGTTTCAGTAGCAAAGACGATGAAGAGATGTCCAAATCGGCGCTTTCGGCTTTTAGGGAGAAGGAAGAGGAGATCGAGCGGATGAGGGCCGAAGTTCAGCAGAAACTTCAAGCTCGACTCGGCCGTGTCGAGGAAGAAAACAGGCGTTTGGCTTCCATTCGAGAGGAACTTGAAGCAATAGCGGATCCAATGAGGAAAGAAATCGGACAGATTCGTAAGAGAATTGATGCAGTAAACAAGGAATTAAAACCACTAGGACAAACATGCCAAAAAAGGGAGAAAGAATACAAAGATGCCCTTGATGCCTTCAATGAAAAGAACAGCGAGAAAGTACAATTAGTATCAAAACTAATGGAGATGGTTGGTGAAAGTGAAAGGCTGAGGCTGAGGAGGTTGGAAGAACTGAGTAAGCATGTGGACAACACTTCCTAATTTGATTCATCTGTTTGTAGCCCTTTGTGGTATGTGCTTTACTCTCTGTCTATGTCTGTATTATGAGGGTGTTTTACTTTAACCACTGTCTTATATTTTGATTTCATTTTGTTTTAGTTTACTTCACTTGAACCAACATTCATAACTTAGGGTAACCACTGTCTTATATGTATGTATTTCTTTTAACTAATACAAAGATATATTGTATTTAAA

Coding sequence (CDS)

ATGCAGCAGGCGGAGCAAAATCCACAGCACCAGCAGCTTCAATTGATGTTACAGAATTCTGGAAATTTTAGTTTCAGTAGCAAAGACGATGAAGAGATGTCCAAATCGGCGCTTTCGGCTTTTAGGGAGAAGGAAGAGGAGATCGAGCGGATGAGGGCCGAAGTTCAGCAGAAACTTCAAGCTCGACTCGGCCGTGTCGAGGAAGAAAACAGGCGTTTGGCTTCCATTCGAGAGGAACTTGAAGCAATAGCGGATCCAATGAGGAAAGAAATCGGACAGATTCGTAAGAGAATTGATGCAGTAAACAAGGAATTAAAACCACTAGGACAAACATGCCAAAAAAGGGAGAAAGAATACAAAGATGCCCTTGATGCCTTCAATGAAAAGAACAGCGAGAAAGTACAATTAGTATCAAAACTAATGGAGATGGTTGGTGAAAGTGAAAGGCTGAGGCTGAGGAGGTTGGAAGAACTGAGTAAGCATGTGGACAACACTTCCTAA

Protein sequence

MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRAEVQQKLQARLGRVEEENRRLASIREELEAIADPMRKEIGQIRKRIDAVNKELKPLGQTCQKREKEYKDALDAFNEKNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS

Homology

[Close]

BLAST of Carg05389 vs. NCBI nr
Match: XP_022962812.1 (uncharacterized protein KIAA1211-like [Cucurbita moschata])

HSP 1 Score: 156.8 bits (395), Expect = 6.6e-35
Identity = 162/166 (97.59%), Postives = 162/166 (97.59%), Query Frame = 0


Query: 1   MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRAEVQQKLQ 60
           MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMR EVQQKLQ
Sbjct: 1   MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRTEVQQKLQ 60

Query: 61  ARLGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           ARLGR  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  ARLGRVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS 167
           XXXXXXXX NSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS
Sbjct: 121 XXXXXXXXKNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS 166

[Close]

BLAST of Carg05389 vs. NCBI nr
Match: XP_023517191.1 (uncharacterized protein KIAA1211-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156.8 bits (395), Expect = 6.6e-35
Identity = 165/166 (99.40%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRAEVQQKLQ 60
           MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMR EVQQKLQ
Sbjct: 1   MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRTEVQQKLQ 60

Query: 61  ARLGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           ARLGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  ARLGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS 167
           XXXXXXXXXNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS
Sbjct: 121 XXXXXXXXXNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS 166

[Close]

BLAST of Carg05389 vs. NCBI nr
Match: XP_022972692.1 (uncharacterized protein KIAA1211-like [Cucurbita maxima])

HSP 1 Score: 153.3 bits (386), Expect = 7.3e-34
Identity = 164/166 (98.80%), Postives = 164/166 (98.80%), Query Frame = 0


Query: 1   MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRAEVQQKLQ 60
           MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRAEVQQKLQ
Sbjct: 1   MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRAEVQQKLQ 60

Query: 61  ARLGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           ARLG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  ARLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS 167
           XXXXXXXXX SEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS
Sbjct: 121 XXXXXXXXXXSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS 166

[Close]

BLAST of Carg05389 vs. NCBI nr
Match: XP_023543803.1 (uncharacterized protein LOC111803564 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.5 bits (306), Expect = 1.4e-24
Identity = 85/165 (51.52%), Postives = 93/165 (56.36%), Query Frame = 0


Query: 3   QAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRAEVQQKLQAR 62
           Q EQNP  QQLQ+MLQNSGN SFSSK+DEEMSKSALSAFREKEEEIERMR E+QQKLQAR
Sbjct: 2   QNEQNP--QQLQVMLQNSGNLSFSSKEDEEMSKSALSAFREKEEEIERMRTELQQKLQAR 61

Query: 63  LGR-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 122
           LGR                                                         
Sbjct: 62  LGRVEEESRRLASIREELEGIDGDPTRKEIGQIRKRIDTLNKELKPLGQICQKKEKEYKD 121

Query: 123 XXXXXXXXNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS 167
                   N+EKVQ +SKLMEMVGESER+RL+RLEELSKHVDN +
Sbjct: 122 ALDAFNEKNNEKVQCISKLMEMVGESERVRLKRLEELSKHVDNNT 164

[Close]

BLAST of Carg05389 vs. NCBI nr
Match: XP_022979025.1 (uncharacterized protein LOC111478791 [Cucurbita maxima])

HSP 1 Score: 122.1 bits (305), Expect = 1.8e-24
Identity = 85/163 (52.15%), Postives = 92/163 (56.44%), Query Frame = 0


Query: 3   QAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRAEVQQKLQAR 62
           Q EQNP  QQLQ+MLQNSGN SFSSK+DEEMSKSALSAFREKEEEIERMR E+QQKLQAR
Sbjct: 2   QNEQNP--QQLQVMLQNSGNLSFSSKEDEEMSKSALSAFREKEEEIERMRTELQQKLQAR 61

Query: 63  LGR-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 122
           LGR                                                         
Sbjct: 62  LGRVEEESRRLASIREELEGIDGDPTRKEIGQIRKRIDTLNKELKPLGQICQKKEKEYKD 121

Query: 123 XXXXXXXXNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDN 165
                   N+EKVQ +SKLMEMVGESER+RL+RLEELSKHVDN
Sbjct: 122 ALDAFNEKNNEKVQCISKLMEMVGESERVRLKRLEELSKHVDN 162

[Close]

BLAST of Carg05389 vs. TAIR10
Match: AT3G09980.1 (Family of unknown function (DUF662) )

HSP 1 Score: 74.3 bits (181), Expect = 7.8e-14
Identity = 96/160 (60.00%), Postives = 120/160 (75.00%), Query Frame = 0


Query: 8   PQHQQLQLMLQNSGNFSFS---SKDDEEMSKSALSAFREKEEEIERMRAEVQQKLQARLG 67
           P     QL  Q SG+ SFS   SK+DEEMS++ALSAFR KEEEIE+ + E+++++QA+LG
Sbjct: 17  PAVHSRQLGAQLSGSMSFSSQMSKEDEEMSRTALSAFRAKEEEIEKKKMEIRERVQAQLG 76

Query: 68  RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 127
           R                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 77  RVEEETKRLALIREELEGLADPMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 136

Query: 128 XXXXXNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDN 165
           XXXXX  EKVQL+++LME+VGESE++R+++LEELSK++D+
Sbjct: 137 XXXXXXREKVQLITRLMELVGESEKMRMKKLEELSKNIDS 176

[Close]

BLAST of Carg05389 vs. TAIR10
Match: AT5G03660.1 (Family of unknown function (DUF662) )

HSP 1 Score: 62.8 bits (151), Expect = 2.3e-10
Identity = 51/167 (30.54%), Postives = 77/167 (46.11%), Query Frame = 0


Query: 2   QQAEQNPQHQQLQLMLQNSGNFSFSS---KDDEEMSKSALSAFREKEEEIERMRAEVQQK 61
           + ++  P  Q  +L  Q S + SFSS   K+D+E+S  ALSAF+ KEEEIE+ + E++++
Sbjct: 5   ETSQPAPSDQGRRLKDQLSESMSFSSQMKKEDDELSMKALSAFKAKEEEIEKKKMEIRER 64

Query: 62  LQARLGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 121
           +QA+LGR                                                     
Sbjct: 65  VQAQLGRVEDESKRLAMIREELEGFADPMRKEVTMVRKKIDSLDKELKPLGNTVQKKETE 124

Query: 122 XXXXXXXXXXXNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNT 166
                      N EKV+L++KL E+ GESE+ R ++LEELSK++D T
Sbjct: 125 YKDALEAFNEKNKEKVELITKLQELEGESEKFRFKKLEELSKNIDLT 171

[Close]

BLAST of Carg05389 vs. TAIR10
Match: AT3G52920.1 (Family of unknown function (DUF662) )

HSP 1 Score: 62.0 bits (149), Expect = 4.0e-10
Identity = 101/167 (60.48%), Postives = 123/167 (73.65%), Query Frame = 0


Query: 3   QAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRAEVQQKLQAR 62
           +A   P  Q + L        S  SK+DEEM++SALSAFR KE+EIE+ + EV+++++A+
Sbjct: 6   EATTQPPQQMMSLSFS-----SQMSKEDEEMARSALSAFRAKEDEIEKRKMEVRERVKAQ 65

Query: 63  LGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 122
           LG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         
Sbjct: 66  LGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKEREYKEA 125

Query: 123 XXXXXXXNSEKVQLVSKLMEM---VGESERLRLRRLEELSKHVDNTS 167
                  N EKVQL++KLMEM   VGESE+LRL++L+ELS+ +D  S
Sbjct: 126 LDTFNEKNREKVQLITKLMEMGQLVGESEKLRLKKLDELSRSIDTES 167

[Close]

BLAST of Carg05389 vs. TAIR10
Match: AT2G36410.1 (Family of unknown function (DUF662) )

HSP 1 Score: 53.9 bits (128), Expect = 1.1e-07
Identity = 99/154 (64.29%), Postives = 117/154 (75.97%), Query Frame = 0


Query: 16  MLQNSGNFSFS---SKDDEEMSKSALSAFREKEEEIERMRAEVQQKLQARLGRXXXXXXX 75
           M+ ++G+ SFS   S++DEEM++SALSAFR KE+EIE+ R EV+         XXXXXXX
Sbjct: 40  MVLHTGSLSFSSHMSREDEEMTRSALSAFRAKEDEIEKRRMEVRXXXXXXXXXXXXXXXX 99

Query: 76  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSE 135
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX              N E
Sbjct: 100 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEREYKEALDTFNEKNRE 159

Query: 136 KVQLVSKLMEM---VGESERLRLRRLEELSKHVD 164
           KVQL++KLMEM   VGESE+LR+ +LEELSK ++
Sbjct: 160 KVQLITKLMEMEQLVGESEKLRMIKLEELSKSIE 193

[Close]

BLAST of Carg05389 vs. TAIR10
Match: AT2G27740.1 (Family of unknown function (DUF662) )

HSP 1 Score: 45.8 bits (107), Expect = 3.0e-05
Identity = 55/167 (32.93%), Postives = 81/167 (48.50%), Query Frame = 0


Query: 2   QQAEQNPQHQQLQLMLQNSGNFSFS-----SKDDEEMSKSALSAFREKEEEIERMRAEVQ 61
           +Q  + PQ   +Q  +++SGN S +      + +EE+S+SA + F+ KE+EIER + EV+
Sbjct: 5   RQILEQPQSPFIQ-RIKSSGNISMNGSPMIDEKEEELSQSAFALFKAKEDEIERRKMEVK 64

Query: 62  QKLQARLGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 121
            ++Q +LG                             XXXXXXXXXX             
Sbjct: 65  DRVQKKLGLAEEATRRLAEIREELEALTDPMRKEISAXXXXXXXXXXELKPLGQSCQRKE 124

Query: 122 XXXXXXXXXXXXXNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVD 164
                        N EK   VSKL+E+V ESE+LR+ +LEELSK ++
Sbjct: 125 REFKEALEAYNEKNKEKAIFVSKLVELVTESEKLRMTKLEELSKSIE 170

[Close]

BLAST of Carg05389 vs. TrEMBL
Match: tr|A0A1S3CIS0|A0A1S3CIS0_CUCME (uncharacterized protein LOC103500877 OS=Cucumis melo OX=3656 GN=LOC103500877 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.1e-22
Identity = 80/165 (48.48%), Postives = 91/165 (55.15%), Query Frame = 0


Query: 3   QAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRAEVQQKLQAR 62
           Q +QNP  QQLQ ML+NSGN SFSSK+D+EMSKSAL+AFREKEEEI+RMR E+  KLQ R
Sbjct: 2   QTDQNPP-QQLQTMLENSGNLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVR 61

Query: 63  LGR-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 122
           LGR                                                         
Sbjct: 62  LGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDALNKELKPLGVTCQKKEKEYKD 121

Query: 123 XXXXXXXXNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS 167
                   N+EKVQL+SKLMEMVGESE+LRL+RLEELSKHVDNTS
Sbjct: 122 ALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS 165

[Close]

BLAST of Carg05389 vs. TrEMBL
Match: tr|A0A0A0KHE9|A0A0A0KHE9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G450440 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 5.5e-22
Identity = 79/165 (47.88%), Postives = 91/165 (55.15%), Query Frame = 0


Query: 3   QAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRAEVQQKLQAR 62
           Q++QNP  QQLQ ML+NS N SFSSK+D+EMSKSAL+AFREKEEEI+RMR E+  KLQ R
Sbjct: 2   QSDQNPP-QQLQAMLENSANLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLR 61

Query: 63  LGR-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 122
           LGR                                                         
Sbjct: 62  LGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDALNKELKPLGVTCQKKEKEYKD 121

Query: 123 XXXXXXXXNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS 167
                   N+EKVQL+SKLMEMVGESE+LRL+RLEELSKHVDNTS
Sbjct: 122 ALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS 165

[Close]

BLAST of Carg05389 vs. TrEMBL
Match: tr|A0A0D2Q0P9|A0A0D2Q0P9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G157400 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.5e-16
Identity = 87/167 (52.10%), Postives = 104/167 (62.28%), Query Frame = 0


Query: 1   MQQAEQNPQHQQLQLMLQNSGNFSFS---SKDDEEMSKSALSAFREKEEEIERMRAEVQQ 60
           M Q EQ PQHQ  QL +QNSG+ SFS   SK+DEE+SKSALS FR KEEEIER + EV++
Sbjct: 1   MMQTEQQPQHQN-QLTVQNSGSLSFSSHLSKEDEEISKSALSTFRAKEEEIERKKMEVRE 60

Query: 61  KLQARLGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           K+Q +LGR                        XXXXXXXXXXXXXXXXXX          
Sbjct: 61  KVQLQLGRVEEETKRLASIREELEALADPMRKXXXXXXXXXXXXXXXXXXLGHTCQKKER 120

Query: 121 XXXXXXXXXXXXNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDN 165
                       N EKVQL++KLME+V ESERLR+++LEELSK+VD+
Sbjct: 121 EYKEALEAFNEKNKEKVQLITKLMELVSESERLRMKKLEELSKNVDS 166

[Close]

BLAST of Carg05389 vs. TrEMBL
Match: tr|A0A0B0NX29|A0A0B0NX29_GOSAR (RAB6-interacting golgin OS=Gossypium arboreum OX=29729 GN=F383_22701 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 5.9e-16
Identity = 84/167 (50.30%), Postives = 102/167 (61.08%), Query Frame = 0


Query: 1   MQQAEQNPQHQQLQLMLQNSGNFSFS---SKDDEEMSKSALSAFREKEEEIERMRAEVQQ 60
           M Q EQ PQHQ  QL +QNSG+ SFS   SK+DEE+SKSALS FR KEEEIER + EV++
Sbjct: 1   MMQTEQQPQHQN-QLTVQNSGSLSFSSHLSKEDEEISKSALSTFRAKEEEIERKKMEVRE 60

Query: 61  KLQARLGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           K+Q +LGR                          XXXXXXXXXXXXXXXX          
Sbjct: 61  KVQLQLGRVEEETKRLATIREELEALADPMRKEVXXXXXXXXXXXXXXXXLGHTCQKKER 120

Query: 121 XXXXXXXXXXXXNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDN 165
                       N EKVQL++KLME+V ESERLR+++LEELSK++D+
Sbjct: 121 EYKEALEAFNEKNKEKVQLITKLMELVSESERLRMKKLEELSKNIDS 166

[Close]

BLAST of Carg05389 vs. TrEMBL
Match: tr|A0A1U8HU16|A0A1U8HU16_GOSHI (probable DNA double-strand break repair Rad50 ATPase isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107889559 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 5.9e-16
Identity = 84/167 (50.30%), Postives = 102/167 (61.08%), Query Frame = 0


Query: 1   MQQAEQNPQHQQLQLMLQNSGNFSFS---SKDDEEMSKSALSAFREKEEEIERMRAEVQQ 60
           M Q EQ PQHQ  QL +QNSG+ SFS   SK+DEE+SKSALS FR KEEEIER + EV++
Sbjct: 1   MMQTEQQPQHQN-QLTVQNSGSLSFSSHLSKEDEEISKSALSTFRAKEEEIERKKMEVRE 60

Query: 61  KLQARLGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           K+Q +LGR                          XXXXXXXXXXXXXXXX          
Sbjct: 61  KVQLQLGRVEEETKRLATIREELEALADPMRKEVXXXXXXXXXXXXXXXXLGHTCQKKER 120

Query: 121 XXXXXXXXXXXXNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDN 165
                       N EKVQL++KLME+V ESERLR+++LEELSK++D+
Sbjct: 121 EYKEALEAFNEKNKEKVQLITKLMELVSESERLRMKKLEELSKNIDS 166

The following BLAST results are available for this feature:

BLAST of Carg05389 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022962812.1	6.6e-35	97.59	uncharacterized protein KIAA1211-like [Cucurbita moschata]	[more]
XP_023517191.1	6.6e-35	99.40	uncharacterized protein KIAA1211-like [Cucurbita pepo subsp. pepo]	[more]
XP_022972692.1	7.3e-34	98.80	uncharacterized protein KIAA1211-like [Cucurbita maxima]	[more]
XP_023543803.1	1.4e-24	51.52	uncharacterized protein LOC111803564 [Cucurbita pepo subsp. pepo]	[more]
XP_022979025.1	1.8e-24	52.15	uncharacterized protein LOC111478791 [Cucurbita maxima]	[more]

BLAST of Carg05389 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G09980.1	7.8e-14	60.00	Family of unknown function (DUF662)	[more]
AT5G03660.1	2.3e-10	30.54	Family of unknown function (DUF662)	[more]
AT3G52920.1	4.0e-10	60.48	Family of unknown function (DUF662)	[more]
AT2G36410.1	1.1e-07	64.29	Family of unknown function (DUF662)	[more]
AT2G27740.1	3.0e-05	32.93	Family of unknown function (DUF662)	[more]

BLAST of Carg05389 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg05389 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CIS0\|A0A1S3CIS0_CUCME	1.1e-22	48.48	uncharacterized protein LOC103500877 OS=Cucumis melo OX=3656 GN=LOC103500877 PE=...	[more]
tr\|A0A0A0KHE9\|A0A0A0KHE9_CUCSA	5.5e-22	47.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G450440 PE=4 SV=1	[more]
tr\|A0A0D2Q0P9\|A0A0D2Q0P9_GOSRA	4.5e-16	52.10	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G157400 PE=4 ...	[more]
tr\|A0A0B0NX29\|A0A0B0NX29_GOSAR	5.9e-16	50.30	RAB6-interacting golgin OS=Gossypium arboreum OX=29729 GN=F383_22701 PE=4 SV=1	[more]
tr\|A0A1U8HU16\|A0A1U8HU16_GOSHI	5.9e-16	50.30	probable DNA double-strand break repair Rad50 ATPase isoform X2 OS=Gossypium hir...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007033	GORAB

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05389-RA	Carg05389-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 34..61
None	No IPR available	COILS	Coil	Coil	coord: 63..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	PANTHER	PTHR21470:SF4	SUBFAMILY NOT NAMED	coord: 6..164
IPR007033	RAB6-interacting golgin	PFAM	PF04949	Transcrip_act	coord: 18..163 e-value: 2.6E-67 score: 225.4
IPR007033	RAB6-interacting golgin	PANTHER	PTHR21470	NTKL-BINDING PROTEIN 1	coord: 6..164

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg05389	Cla017717	Watermelon (97103) v1	carwmB0801
Carg05389	Cla018374	Watermelon (97103) v1	carwmB0806
Carg05389	Csa6G450440	Cucumber (Chinese Long) v2	carcuB0825
Carg05389	Csa3G751460	Cucumber (Chinese Long) v2	carcuB0821
Carg05389	MELO3C024522	Melon (DHL92) v3.5.1	carmeB0808
Carg05389	MELO3C009443	Melon (DHL92) v3.5.1	carmeB0803
Carg05389	ClCG04G009830	Watermelon (Charleston Gray)	carwcgB0788
Carg05389	ClCG10G019230	Watermelon (Charleston Gray)	carwcgB0777
Carg05389	CSPI06G25270	Wild cucumber (PI 183967)	carcpiB0845
Carg05389	CSPI03G34300	Wild cucumber (PI 183967)	carcpiB0841
Carg05389	Cucsa.378430	Cucumber (Gy14) v1	carcgyB0926
Carg05389	CmaCh03G011730	Cucurbita maxima (Rimu)	carcmaB1126
Carg05389	CmaCh06G004560	Cucurbita maxima (Rimu)	carcmaB1128
Carg05389	CmaCh07G008650	Cucurbita maxima (Rimu)	carcmaB1131
Carg05389	CmaCh14G002900	Cucurbita maxima (Rimu)	carcmaB1116
Carg05389	CmoCh14G002790	Cucurbita moschata (Rifu)	carcmoB1087
Carg05389	CmoCh06G004570	Cucurbita moschata (Rifu)	carcmoB1098
Carg05389	CmoCh07G008980	Cucurbita moschata (Rifu)	carcmoB1101
Carg05389	CmoCh03G011680	Cucurbita moschata (Rifu)	carcmoB1096
Carg05389	Lsi01G012460	Bottle gourd (USVL1VR-Ls)	carlsiB743
Carg05389	Lsi03G019260	Bottle gourd (USVL1VR-Ls)	carlsiB745
Carg05389	Cp4.1LG03g01060	Cucurbita pepo (Zucchini)	carcpeB1137
Carg05389	Cp4.1LG19g03580	Cucurbita pepo (Zucchini)	carcpeB1134
Carg05389	Cp4.1LG10g04100	Cucurbita pepo (Zucchini)	carcpeB1127
Carg05389	CsGy3G032080	Cucumber (Gy14) v2	carcgybB0795
Carg05389	CsGy6G024700	Cucumber (Gy14) v2	carcgybB0798
Carg05389	MELO3C024522.2	Melon (DHL92) v3.6.1	carmedB0819
Carg05389	MELO3C009443.2	Melon (DHL92) v3.6.1	carmedB0815
Carg05389	CsaV3_6G040460	Cucumber (Chinese Long) v3	carcucB0848
Carg05389	CsaV3_3G036960	Cucumber (Chinese Long) v3	carcucB0845
Carg05389	Cla97C10G202330	Watermelon (97103) v2	carwmbB0841
Carg05389	Cla97C04G076650	Watermelon (97103) v2	carwmbB0848
Carg05389	Bhi11G001662	Wax gourd	carwgoB0938
Carg05389	Bhi03G001135	Wax gourd	carwgoB0949

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg05389	Carg10464	Silver-seed gourd	carcarB279
Carg05389	Carg03695	Silver-seed gourd	carcarB293

The following block(s) are covering this gene:


Gene	Organism	Block
Carg05389	Cucumber (Gy14) v1	carcgyB0915
Carg05389	Cucumber (Gy14) v1	carcgyB0923
Carg05389	Wild cucumber (PI 183967)	carcpiB0842
Carg05389	Cucumber (Chinese Long) v2	carcuB0822
Carg05389	Melon (DHL92) v3.5.1	carmeB0804
Carg05389	Watermelon (Charleston Gray)	carwcgB0787
Carg05389	Watermelon (97103) v1	carwmB0814