Carg05389-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05389-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Family of unknown function (DUF662)
Location	Cucurbita_argyrosperma_scaffold_010 : 1579779 .. 1581081 (-)
Sequence length	803

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAGGGAAGAGAGTTCATAGTTCATACATTACAACCAACAAAGAGACAAGAACGCTTCCTCTGAAAAAATCGAGAGAAAAAGTTGAAGATGCAGCAGGCGGAGCAAAATCCACAGCACCAGCAGCTTCAATTGATGTTACAGAATTCTGGAAATTTTAGTTTCAGTAGCAAAGACGATGAAGAGATGTCCAAATCGGCGCTTTCGGCTTTTAGGGAGAAGGAAGAGGAGATCGAGCGGATGAGGGCCGAAGTTCAGCAGAAACTTCAAGCTCGACTCGGCCGTGTCGAGGAAGAAAACAGGCGTTTGGCTTCCATTCGAGAGGTCTTCTCTTTCCTTACACATAAACCCTAACTGATTAACTCTTCGTTTTTCTTTTCTCTGTTTCATCTCTGCAATAACTGCTATCAATTTCTATTTTCTTTCCGGAATTCTATTCAATTTTGCGAAATTCAACATCTGACCTAGAAATTCTTCTGCTGCTAGTTTGCGCTTTCCGAAATCGAATCGAAACCCCTAAATTCAACCGCTAAATCGTACTTCATTCTTTATTACCTTAAATTACAAGTAAACTAGTAGTTAGGATGACTGGATAAAGAATTTAATAGCCTGAAGGGAATCATGAACAGGAACTTGAAGCAATAGCGGATCCAATGAGGAAAGAAATCGGACAGATTCGTAAGAGAATTGATGCAGTAAACAAGGAATTAAAACCACTAGGACAAACATGCCAAAAAAGGGTAATCCCCTTTTTTCTTCTTACAATCTTTCTCACAAGTTATTCCAAAGAGACAAAACATTTTTGAAACCTTTTAAGATCTGGAATTGTTGTGTATAACAGGAGAAAGAATACAAAGATGCCCTTGATGCCTTCAATGAAAAGAACAGCGAGAAAGTACAATTAGTATCAAAACTAATGGAGGTTAGTCTCATAAATTCTGAAATTCTCTCTTCTGGGAACATTGAATTTAATATGAACACATAGGTATTGTTTGTTGTGATTATGATGATATTAGATGGTTGGTGAAAGTGAAAGGCTGAGGCTGAGGAGGTTGGAAGAACTGAGTAAGCATGTGGACAACACTTCCTAATTTGATTCATCTGTTTGTAGCCCTTTGTGGTATGTGCTTTACTCTCTGTCTATGTCTGTATTATGAGGGTGTTTTACTTTAACCACTGTCTTATATTTTGATTTCATTTTGTTTTAGTTTACTTCACTTGAACCAACATTCATAACTTAGGGTAACCACTGTCTTATATGTATGTATTTCTTTTAACTAATACAAAGATATATTGTATTTAAA

mRNA sequence

GAAAGGGAAGAGAGTTCATAGTTCATACATTACAACCAACAAAGAGACAAGAACGCTTCCTCTGAAAAAATCGAGAGAAAAAGTTGAAGATGCAGCAGGCGGAGCAAAATCCACAGCACCAGCAGCTTCAATTGATGTTACAGAATTCTGGAAATTTTAGTTTCAGTAGCAAAGACGATGAAGAGATGTCCAAATCGGCGCTTTCGGCTTTTAGGGAGAAGGAAGAGGAGATCGAGCGGATGAGGGCCGAAGTTCAGCAGAAACTTCAAGCTCGACTCGGCCGTGTCGAGGAAGAAAACAGGCGTTTGGCTTCCATTCGAGAGGAACTTGAAGCAATAGCGGATCCAATGAGGAAAGAAATCGGACAGATTCGTAAGAGAATTGATGCAGTAAACAAGGAATTAAAACCACTAGGACAAACATGCCAAAAAAGGGAGAAAGAATACAAAGATGCCCTTGATGCCTTCAATGAAAAGAACAGCGAGAAAGTACAATTAGTATCAAAACTAATGGAGATGGTTGGTGAAAGTGAAAGGCTGAGGCTGAGGAGGTTGGAAGAACTGAGTAAGCATGTGGACAACACTTCCTAATTTGATTCATCTGTTTGTAGCCCTTTGTGGTATGTGCTTTACTCTCTGTCTATGTCTGTATTATGAGGGTGTTTTACTTTAACCACTGTCTTATATTTTGATTTCATTTTGTTTTAGTTTACTTCACTTGAACCAACATTCATAACTTAGGGTAACCACTGTCTTATATGTATGTATTTCTTTTAACTAATACAAAGATATATTGTATTTAAA

Coding sequence (CDS)

ATGCAGCAGGCGGAGCAAAATCCACAGCACCAGCAGCTTCAATTGATGTTACAGAATTCTGGAAATTTTAGTTTCAGTAGCAAAGACGATGAAGAGATGTCCAAATCGGCGCTTTCGGCTTTTAGGGAGAAGGAAGAGGAGATCGAGCGGATGAGGGCCGAAGTTCAGCAGAAACTTCAAGCTCGACTCGGCCGTGTCGAGGAAGAAAACAGGCGTTTGGCTTCCATTCGAGAGGAACTTGAAGCAATAGCGGATCCAATGAGGAAAGAAATCGGACAGATTCGTAAGAGAATTGATGCAGTAAACAAGGAATTAAAACCACTAGGACAAACATGCCAAAAAAGGGAGAAAGAATACAAAGATGCCCTTGATGCCTTCAATGAAAAGAACAGCGAGAAAGTACAATTAGTATCAAAACTAATGGAGATGGTTGGTGAAAGTGAAAGGCTGAGGCTGAGGAGGTTGGAAGAACTGAGTAAGCATGTGGACAACACTTCCTAA

Protein sequence

MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRAEVQQKLQARLGRVEEENRRLASIREELEAIADPMRKEIGQIRKRIDAVNKELKPLGQTCQKREKEYKDALDAFNEKNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS

Homology

[Close]

BLAST of Carg05389-RA vs. NCBI nr
Match: XP_022962812.1 (uncharacterized protein KIAA1211-like [Cucurbita moschata])

HSP 1 Score: 156.8 bits (395), Expect = 6.6e-35
Identity = 162/166 (97.59%), Postives = 162/166 (97.59%), Query Frame = 0


Query: 1   MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRAEVQQKLQ 60
           MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMR EVQQKLQ
Sbjct: 1   MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRTEVQQKLQ 60

Query: 61  ARLGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           ARLGR  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  ARLGRVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS 167
           XXXXXXXX NSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS
Sbjct: 121 XXXXXXXXKNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS 166

[Close]

BLAST of Carg05389-RA vs. NCBI nr
Match: XP_023517191.1 (uncharacterized protein KIAA1211-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156.8 bits (395), Expect = 6.6e-35
Identity = 165/166 (99.40%), Postives = 165/166 (99.40%), Query Frame = 0


Query: 1   MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRAEVQQKLQ 60
           MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMR EVQQKLQ
Sbjct: 1   MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRTEVQQKLQ 60

Query: 61  ARLGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           ARLGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  ARLGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS 167
           XXXXXXXXXNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS
Sbjct: 121 XXXXXXXXXNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS 166

[Close]

BLAST of Carg05389-RA vs. NCBI nr
Match: XP_022972692.1 (uncharacterized protein KIAA1211-like [Cucurbita maxima])

HSP 1 Score: 153.3 bits (386), Expect = 7.3e-34
Identity = 164/166 (98.80%), Postives = 164/166 (98.80%), Query Frame = 0


Query: 1   MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRAEVQQKLQ 60
           MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRAEVQQKLQ
Sbjct: 1   MQQAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRAEVQQKLQ 60

Query: 61  ARLGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           ARLG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  ARLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS 167
           XXXXXXXXX SEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS
Sbjct: 121 XXXXXXXXXXSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS 166

[Close]

BLAST of Carg05389-RA vs. NCBI nr
Match: XP_023543803.1 (uncharacterized protein LOC111803564 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.5 bits (306), Expect = 1.4e-24
Identity = 85/165 (51.52%), Postives = 93/165 (56.36%), Query Frame = 0


Query: 3   QAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRAEVQQKLQAR 62
           Q EQNP  QQLQ+MLQNSGN SFSSK+DEEMSKSALSAFREKEEEIERMR E+QQKLQAR
Sbjct: 2   QNEQNP--QQLQVMLQNSGNLSFSSKEDEEMSKSALSAFREKEEEIERMRTELQQKLQAR 61

Query: 63  LGR-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 122
           LGR                                                         
Sbjct: 62  LGRVEEESRRLASIREELEGIDGDPTRKEIGQIRKRIDTLNKELKPLGQICQKKEKEYKD 121

Query: 123 XXXXXXXXNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS 167
                   N+EKVQ +SKLMEMVGESER+RL+RLEELSKHVDN +
Sbjct: 122 ALDAFNEKNNEKVQCISKLMEMVGESERVRLKRLEELSKHVDNNT 164

[Close]

BLAST of Carg05389-RA vs. NCBI nr
Match: XP_022979025.1 (uncharacterized protein LOC111478791 [Cucurbita maxima])

HSP 1 Score: 122.1 bits (305), Expect = 1.8e-24
Identity = 85/163 (52.15%), Postives = 92/163 (56.44%), Query Frame = 0


Query: 3   QAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRAEVQQKLQAR 62
           Q EQNP  QQLQ+MLQNSGN SFSSK+DEEMSKSALSAFREKEEEIERMR E+QQKLQAR
Sbjct: 2   QNEQNP--QQLQVMLQNSGNLSFSSKEDEEMSKSALSAFREKEEEIERMRTELQQKLQAR 61

Query: 63  LGR-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 122
           LGR                                                         
Sbjct: 62  LGRVEEESRRLASIREELEGIDGDPTRKEIGQIRKRIDTLNKELKPLGQICQKKEKEYKD 121

Query: 123 XXXXXXXXNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDN 165
                   N+EKVQ +SKLMEMVGESER+RL+RLEELSKHVDN
Sbjct: 122 ALDAFNEKNNEKVQCISKLMEMVGESERVRLKRLEELSKHVDN 162

[Close]

BLAST of Carg05389-RA vs. TAIR10
Match: AT3G09980.1 (Family of unknown function (DUF662) )

HSP 1 Score: 74.3 bits (181), Expect = 7.8e-14
Identity = 96/160 (60.00%), Postives = 120/160 (75.00%), Query Frame = 0


Query: 8   PQHQQLQLMLQNSGNFSFS---SKDDEEMSKSALSAFREKEEEIERMRAEVQQKLQARLG 67
           P     QL  Q SG+ SFS   SK+DEEMS++ALSAFR KEEEIE+ + E+++++QA+LG
Sbjct: 17  PAVHSRQLGAQLSGSMSFSSQMSKEDEEMSRTALSAFRAKEEEIEKKKMEIRERVQAQLG 76

Query: 68  RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 127
           R                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 77  RVEEETKRLALIREELEGLADPMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 136

Query: 128 XXXXXNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDN 165
           XXXXX  EKVQL+++LME+VGESE++R+++LEELSK++D+
Sbjct: 137 XXXXXXREKVQLITRLMELVGESEKMRMKKLEELSKNIDS 176

[Close]

BLAST of Carg05389-RA vs. TAIR10
Match: AT5G03660.1 (Family of unknown function (DUF662) )

HSP 1 Score: 62.8 bits (151), Expect = 2.3e-10
Identity = 51/167 (30.54%), Postives = 77/167 (46.11%), Query Frame = 0


Query: 2   QQAEQNPQHQQLQLMLQNSGNFSFSS---KDDEEMSKSALSAFREKEEEIERMRAEVQQK 61
           + ++  P  Q  +L  Q S + SFSS   K+D+E+S  ALSAF+ KEEEIE+ + E++++
Sbjct: 5   ETSQPAPSDQGRRLKDQLSESMSFSSQMKKEDDELSMKALSAFKAKEEEIEKKKMEIRER 64

Query: 62  LQARLGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 121
           +QA+LGR                                                     
Sbjct: 65  VQAQLGRVEDESKRLAMIREELEGFADPMRKEVTMVRKKIDSLDKELKPLGNTVQKKETE 124

Query: 122 XXXXXXXXXXXNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNT 166
                      N EKV+L++KL E+ GESE+ R ++LEELSK++D T
Sbjct: 125 YKDALEAFNEKNKEKVELITKLQELEGESEKFRFKKLEELSKNIDLT 171

[Close]

BLAST of Carg05389-RA vs. TAIR10
Match: AT3G52920.1 (Family of unknown function (DUF662) )

HSP 1 Score: 62.0 bits (149), Expect = 4.0e-10
Identity = 101/167 (60.48%), Postives = 123/167 (73.65%), Query Frame = 0


Query: 3   QAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRAEVQQKLQAR 62
           +A   P  Q + L        S  SK+DEEM++SALSAFR KE+EIE+ + EV+++++A+
Sbjct: 6   EATTQPPQQMMSLSFS-----SQMSKEDEEMARSALSAFRAKEDEIEKRKMEVRERVKAQ 65

Query: 63  LGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 122
           LG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         
Sbjct: 66  LGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKEREYKEA 125

Query: 123 XXXXXXXNSEKVQLVSKLMEM---VGESERLRLRRLEELSKHVDNTS 167
                  N EKVQL++KLMEM   VGESE+LRL++L+ELS+ +D  S
Sbjct: 126 LDTFNEKNREKVQLITKLMEMGQLVGESEKLRLKKLDELSRSIDTES 167

[Close]

BLAST of Carg05389-RA vs. TAIR10
Match: AT2G36410.1 (Family of unknown function (DUF662) )

HSP 1 Score: 53.9 bits (128), Expect = 1.1e-07
Identity = 99/154 (64.29%), Postives = 117/154 (75.97%), Query Frame = 0


Query: 16  MLQNSGNFSFS---SKDDEEMSKSALSAFREKEEEIERMRAEVQQKLQARLGRXXXXXXX 75
           M+ ++G+ SFS   S++DEEM++SALSAFR KE+EIE+ R EV+         XXXXXXX
Sbjct: 40  MVLHTGSLSFSSHMSREDEEMTRSALSAFRAKEDEIEKRRMEVRXXXXXXXXXXXXXXXX 99

Query: 76  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSE 135
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX              N E
Sbjct: 100 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEREYKEALDTFNEKNRE 159

Query: 136 KVQLVSKLMEM---VGESERLRLRRLEELSKHVD 164
           KVQL++KLMEM   VGESE+LR+ +LEELSK ++
Sbjct: 160 KVQLITKLMEMEQLVGESEKLRMIKLEELSKSIE 193

[Close]

BLAST of Carg05389-RA vs. TAIR10
Match: AT2G27740.1 (Family of unknown function (DUF662) )

HSP 1 Score: 45.8 bits (107), Expect = 3.0e-05
Identity = 55/167 (32.93%), Postives = 81/167 (48.50%), Query Frame = 0


Query: 2   QQAEQNPQHQQLQLMLQNSGNFSFS-----SKDDEEMSKSALSAFREKEEEIERMRAEVQ 61
           +Q  + PQ   +Q  +++SGN S +      + +EE+S+SA + F+ KE+EIER + EV+
Sbjct: 5   RQILEQPQSPFIQ-RIKSSGNISMNGSPMIDEKEEELSQSAFALFKAKEDEIERRKMEVK 64

Query: 62  QKLQARLGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 121
            ++Q +LG                             XXXXXXXXXX             
Sbjct: 65  DRVQKKLGLAEEATRRLAEIREELEALTDPMRKEISAXXXXXXXXXXELKPLGQSCQRKE 124

Query: 122 XXXXXXXXXXXXXNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVD 164
                        N EK   VSKL+E+V ESE+LR+ +LEELSK ++
Sbjct: 125 REFKEALEAYNEKNKEKAIFVSKLVELVTESEKLRMTKLEELSKSIE 170

[Close]

BLAST of Carg05389-RA vs. TrEMBL
Match: tr|A0A1S3CIS0|A0A1S3CIS0_CUCME (uncharacterized protein LOC103500877 OS=Cucumis melo OX=3656 GN=LOC103500877 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.1e-22
Identity = 80/165 (48.48%), Postives = 91/165 (55.15%), Query Frame = 0


Query: 3   QAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRAEVQQKLQAR 62
           Q +QNP  QQLQ ML+NSGN SFSSK+D+EMSKSAL+AFREKEEEI+RMR E+  KLQ R
Sbjct: 2   QTDQNPP-QQLQTMLENSGNLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELHNKLQVR 61

Query: 63  LGR-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 122
           LGR                                                         
Sbjct: 62  LGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDALNKELKPLGVTCQKKEKEYKD 121

Query: 123 XXXXXXXXNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS 167
                   N+EKVQL+SKLMEMVGESE+LRL+RLEELSKHVDNTS
Sbjct: 122 ALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS 165

[Close]

BLAST of Carg05389-RA vs. TrEMBL
Match: tr|A0A0A0KHE9|A0A0A0KHE9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G450440 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 5.5e-22
Identity = 79/165 (47.88%), Postives = 91/165 (55.15%), Query Frame = 0


Query: 3   QAEQNPQHQQLQLMLQNSGNFSFSSKDDEEMSKSALSAFREKEEEIERMRAEVQQKLQAR 62
           Q++QNP  QQLQ ML+NS N SFSSK+D+EMSKSAL+AFREKEEEI+RMR E+  KLQ R
Sbjct: 2   QSDQNPP-QQLQAMLENSANLSFSSKEDDEMSKSALAAFREKEEEIDRMRTELNNKLQLR 61

Query: 63  LGR-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 122
           LGR                                                         
Sbjct: 62  LGRVQEESRRLSSLREELEAIGGDPMRKEIGQIRKKIDALNKELKPLGVTCQKKEKEYKD 121

Query: 123 XXXXXXXXNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDNTS 167
                   N+EKVQL+SKLMEMVGESE+LRL+RLEELSKHVDNTS
Sbjct: 122 ALDSFNEKNNEKVQLISKLMEMVGESEKLRLKRLEELSKHVDNTS 165

[Close]

BLAST of Carg05389-RA vs. TrEMBL
Match: tr|A0A0D2Q0P9|A0A0D2Q0P9_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G157400 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.5e-16
Identity = 87/167 (52.10%), Postives = 104/167 (62.28%), Query Frame = 0


Query: 1   MQQAEQNPQHQQLQLMLQNSGNFSFS---SKDDEEMSKSALSAFREKEEEIERMRAEVQQ 60
           M Q EQ PQHQ  QL +QNSG+ SFS   SK+DEE+SKSALS FR KEEEIER + EV++
Sbjct: 1   MMQTEQQPQHQN-QLTVQNSGSLSFSSHLSKEDEEISKSALSTFRAKEEEIERKKMEVRE 60

Query: 61  KLQARLGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           K+Q +LGR                        XXXXXXXXXXXXXXXXXX          
Sbjct: 61  KVQLQLGRVEEETKRLASIREELEALADPMRKXXXXXXXXXXXXXXXXXXLGHTCQKKER 120

Query: 121 XXXXXXXXXXXXNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDN 165
                       N EKVQL++KLME+V ESERLR+++LEELSK+VD+
Sbjct: 121 EYKEALEAFNEKNKEKVQLITKLMELVSESERLRMKKLEELSKNVDS 166

[Close]

BLAST of Carg05389-RA vs. TrEMBL
Match: tr|A0A0B0NX29|A0A0B0NX29_GOSAR (RAB6-interacting golgin OS=Gossypium arboreum OX=29729 GN=F383_22701 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 5.9e-16
Identity = 84/167 (50.30%), Postives = 102/167 (61.08%), Query Frame = 0


Query: 1   MQQAEQNPQHQQLQLMLQNSGNFSFS---SKDDEEMSKSALSAFREKEEEIERMRAEVQQ 60
           M Q EQ PQHQ  QL +QNSG+ SFS   SK+DEE+SKSALS FR KEEEIER + EV++
Sbjct: 1   MMQTEQQPQHQN-QLTVQNSGSLSFSSHLSKEDEEISKSALSTFRAKEEEIERKKMEVRE 60

Query: 61  KLQARLGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           K+Q +LGR                          XXXXXXXXXXXXXXXX          
Sbjct: 61  KVQLQLGRVEEETKRLATIREELEALADPMRKEVXXXXXXXXXXXXXXXXLGHTCQKKER 120

Query: 121 XXXXXXXXXXXXNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDN 165
                       N EKVQL++KLME+V ESERLR+++LEELSK++D+
Sbjct: 121 EYKEALEAFNEKNKEKVQLITKLMELVSESERLRMKKLEELSKNIDS 166

[Close]

BLAST of Carg05389-RA vs. TrEMBL
Match: tr|A0A1U8HU16|A0A1U8HU16_GOSHI (probable DNA double-strand break repair Rad50 ATPase isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107889559 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 5.9e-16
Identity = 84/167 (50.30%), Postives = 102/167 (61.08%), Query Frame = 0


Query: 1   MQQAEQNPQHQQLQLMLQNSGNFSFS---SKDDEEMSKSALSAFREKEEEIERMRAEVQQ 60
           M Q EQ PQHQ  QL +QNSG+ SFS   SK+DEE+SKSALS FR KEEEIER + EV++
Sbjct: 1   MMQTEQQPQHQN-QLTVQNSGSLSFSSHLSKEDEEISKSALSTFRAKEEEIERKKMEVRE 60

Query: 61  KLQARLGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           K+Q +LGR                          XXXXXXXXXXXXXXXX          
Sbjct: 61  KVQLQLGRVEEETKRLATIREELEALADPMRKEVXXXXXXXXXXXXXXXXLGHTCQKKER 120

Query: 121 XXXXXXXXXXXXNSEKVQLVSKLMEMVGESERLRLRRLEELSKHVDN 165
                       N EKVQL++KLME+V ESERLR+++LEELSK++D+
Sbjct: 121 EYKEALEAFNEKNKEKVQLITKLMELVSESERLRMKKLEELSKNIDS 166

The following BLAST results are available for this feature:

BLAST of Carg05389-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022962812.1	6.6e-35	97.59	uncharacterized protein KIAA1211-like [Cucurbita moschata]	[more]
XP_023517191.1	6.6e-35	99.40	uncharacterized protein KIAA1211-like [Cucurbita pepo subsp. pepo]	[more]
XP_022972692.1	7.3e-34	98.80	uncharacterized protein KIAA1211-like [Cucurbita maxima]	[more]
XP_023543803.1	1.4e-24	51.52	uncharacterized protein LOC111803564 [Cucurbita pepo subsp. pepo]	[more]
XP_022979025.1	1.8e-24	52.15	uncharacterized protein LOC111478791 [Cucurbita maxima]	[more]

BLAST of Carg05389-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT3G09980.1	7.8e-14	60.00	Family of unknown function (DUF662)	[more]
AT5G03660.1	2.3e-10	30.54	Family of unknown function (DUF662)	[more]
AT3G52920.1	4.0e-10	60.48	Family of unknown function (DUF662)	[more]
AT2G36410.1	1.1e-07	64.29	Family of unknown function (DUF662)	[more]
AT2G27740.1	3.0e-05	32.93	Family of unknown function (DUF662)	[more]

BLAST of Carg05389-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg05389-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CIS0\|A0A1S3CIS0_CUCME	1.1e-22	48.48	uncharacterized protein LOC103500877 OS=Cucumis melo OX=3656 GN=LOC103500877 PE=...	[more]
tr\|A0A0A0KHE9\|A0A0A0KHE9_CUCSA	5.5e-22	47.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G450440 PE=4 SV=1	[more]
tr\|A0A0D2Q0P9\|A0A0D2Q0P9_GOSRA	4.5e-16	52.10	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G157400 PE=4 ...	[more]
tr\|A0A0B0NX29\|A0A0B0NX29_GOSAR	5.9e-16	50.30	RAB6-interacting golgin OS=Gossypium arboreum OX=29729 GN=F383_22701 PE=4 SV=1	[more]
tr\|A0A1U8HU16\|A0A1U8HU16_GOSHI	5.9e-16	50.30	probable DNA double-strand break repair Rad50 ATPase isoform X2 OS=Gossypium hir...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR007033	GORAB

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg05389	Carg05389	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg05389-RA	Carg05389-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05389-RA.three_prime_UTR.1	Carg05389-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05389-RA.CDS.4	Carg05389-RA.CDS.4	CDS
Carg05389-RA.CDS.3	Carg05389-RA.CDS.3	CDS
Carg05389-RA.CDS.2	Carg05389-RA.CDS.2	CDS
Carg05389-RA.CDS.1	Carg05389-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05389-RA.five_prime_UTR.1	Carg05389-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg05389-RA.exon.4	Carg05389-RA.exon.4	exon
Carg05389-RA.exon.3	Carg05389-RA.exon.3	exon
Carg05389-RA.exon.2	Carg05389-RA.exon.2	exon
Carg05389-RA.exon.1	Carg05389-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 34..61
None	No IPR available	COILS	Coil	Coil	coord: 63..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	PANTHER	PTHR21470:SF4	SUBFAMILY NOT NAMED	coord: 6..164
IPR007033	RAB6-interacting golgin	PFAM	PF04949	Transcrip_act	coord: 18..163 e-value: 2.6E-67 score: 225.4
IPR007033	RAB6-interacting golgin	PANTHER	PTHR21470	NTKL-BINDING PROTEIN 1	coord: 6..164